Editor's Note:

Laurie Goodman

Editor's Note
Genome Res. 1998 8: 159. [Full Text]  

INSIGHT/OUTLOOK:

Richard Durbin and Simon Dear

Base Qualities Help Sequencing Software
Genome Res. 1998 8: 161-162. [Full Text]  

Jonathan A. Eisen

Phylogenomics: Improving Functional Predictions for Uncharacterized Genes by Evolutionary Analysis
Genome Res. 1998 8: 163-167. [Full Text]  

Sarah J. Wheelan and Mark S. Boguski

Late-Night Thoughts on the Sequence Annotation Problem
Genome Res. 1998 8: 168-169. [Full Text]  

Kim D. Pruitt

WebWise: Guide to the Baylor College of Medicine Human Genome Sequencing Center's Web Site
Genome Res. 1998 8: 170-174. [Full Text]  

RESEARCH:

Brent Ewing, LaDeana Hillier, Michael C. Wendl, and Phil Green

Base-Calling of Automated Sequencer Traces Using Phred.  I. Accuracy Assessment
Genome Res. 1998 8: 175-185. [Abstract] [Full Text]  

Brent Ewing and Phil Green

Base-Calling of Automated Sequencer Traces Using Phred.  II. Error Probabilities
Genome Res. 1998 8: 186-194. [Abstract] [Full Text]  

David Gordon, Chris Abajian, and Phil Green

Consed: A Graphical Tool for Sequence Finishing
Genome Res. 1998 8: 195-202. [Abstract] [Full Text]  

Hidemasa Bono, Hiroyuki Ogata, Susumu Goto, and Minoru Kanehisa

Reconstruction of Amino Acid Biosynthesis Pathways from the Complete Genome Sequence
Genome Res. 1998 8: 203-210. [Abstract] [Full Text]  

Richa Agarwala, Leslie G. Biesecker, Katherine A. Hopkins, Clair A. Francomano, and Alejandro A. Schaffer

Software for Constructing and Verifying Pedigrees within Large Genealogies and an Application to the Old Order Amish of Lancaster County
Genome Res. 1998 8: 211-221. [Abstract] [Full Text]  

Eric E. Schadt, Janet S. Sinsheimer, and Kenneth Lange

Computational Advances in Maximum Likelihood Methods for Molecular Phylogeny
Genome Res. 1998 8: 222-233. [Abstract] [Full Text]  

L. Charles Bailey, Jr., Stephen Fischer, Jonathan Schug, Jonathan Crabtree, Mark Gibson, and G. Christian Overton

GAIA: Framework Annotation of Genomic Sequence
Genome Res. 1998 8: 234-250. [Abstract] [Full Text]  

LETTERS:

Peter Richterich

Estimation of Errors in "Raw" DNA Sequences: A Validation Study
Genome Res. 1998 8: 251-259. [Abstract] [Full Text]  

Simon Dear, Richard Durbin, LaDeana Hillier, Gabor Marth, Jean Thierry-Mieg, and Richard Mott

Sequence Assembly with CAFTOOLS
Genome Res. 1998 8: 260-267. [Abstract] [Full Text]  

Jian Jiang and Howard J. Jacob

EbEST: An Automated Tool Using Expressed Sequence Tags to Delineate Gene Structure
Genome Res. 1998 8: 268-275. [Abstract] [Full Text]  

John Burke, Hui Wang, Winston Hide, and Daniel B. Davison

Alternative Gene Form Discovery and Candidate Gene Selection from Gene Indexing Projects
Genome Res. 1998 8: 276-290. [Abstract] [Full Text]  

Gregg A. Helt, Suzanna Lewis, Ann E. Loraine, and Gerald M. Rubin

BioViews: Java-Based Tools for Genomic Data Visualization
Genome Res. 1998 8: 291-305. [Abstract] [Full Text]  

Ming K. Lee, Eric D. Lynch, and Mary-Claire King

SeqHelp: A Program to Analyze Molecular Sequences Utilizing Common Computational Resources
Genome Res. 1998 8: 306-312. [Abstract] [Full Text]  

Neilay N. Dedhia and W. Richard McCombie

Kaleidaseq: A Web-Based Tool to Monitor Data Flow in a High Throughput Sequencing Facility
Genome Res. 1998 8: 313-318. [Abstract] [Full Text]  

Michael Q. Zhang

Identification of Human Gene Core Promoters in Silico
Genome Res. 1998 8: 319-326. [Abstract] [Full Text]  

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