Genome Research -- Table of Contents (18 [2])

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Volume 18, Issue 2: February 2008 [Index by Author]

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Other Issues:

COMMENTARY

PERSPECTIVE

LETTERS

METHODS

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To see an article, click its [Full Text] or [PDF] link. To view high-resolution images, choose the Full Text version. To review many abstracts, check the boxes to the left of the titles you want, and click the 'Get All Checked Abstract(s)' button. To see one abstract at a time, click its [Abstract] link.

COMMENTARY:

Elliott H. Margulies: Confidence in comparative genomics
Genome Res. 2008 18: 199-200. [Full Text] [PDF]

PERSPECTIVE:

Gregory M. Cooper and Christopher D. Brown: Qualifying the relationship between sequence conservation and molecular function
Genome Res. 2008 18: 201-205. [Abstract] [Full Text] [PDF]

LETTERS:

Lixia Yao and Andrey Rzhetsky: Quantitative systems-level determinants of human genes targeted by successful drugs
Genome Res. 2008 18: 206-213. Published in Advance December 14, 2007, 10.1101/gr.6888208 [Abstract] [Full Text] [PDF] [Supplemental Research Data] [Podcast]

Amir Goren, Eddo Kim, Maayan Amit, Ron Bochner, Galit Lev-Maor, Nadav Ahituv, and Gil Ast: Alternative approach to a heavy weight problem
Genome Res. 2008 18: 214-220. Published in Advance December 20, 2007, 10.1101/gr.6661308 [Abstract] [Full Text] [PDF] [Supplemental Research Data]

Anuphap Prachumwat and Wen-Hsiung Li: Gene number expansion and contraction in vertebrate genomes with respect to invertebrate genomes
Genome Res. 2008 18: 221-232. Published in Advance December 14, 2007, 10.1101/gr.7046608 [Abstract] [Full Text] [PDF] [Supplemental Research Data]

Zhuo Du, Yiqiang Zhao, and Ning Li: Genome-wide analysis reveals regulatory role of G4 DNA in gene transcription
Genome Res. 2008 18: 233-241. Published in Advance December 20, 2007, 10.1101/gr.6905408 [Abstract] [Full Text] [PDF] [Supplemental Research Data]

Elfar Torarinsson, Zizhen Yao, Eric D. Wiklund, Jesper B. Bramsen, Claus Hansen, Jørgen Kjems, Niels Tommerup, Walter L. Ruzzo, and Jan Gorodkin: Comparative genomics beyond sequence-based alignments: RNA structures in the ENCODE regions
Genome Res. 2008 18: 242-251. Published in Advance December 20, 2007, 10.1101/gr.6887408 [Abstract] [Full Text] [PDF] [Supplemental Research Data]

David M. McGaughey, Ryan M. Vinton, Jimmy Huynh, Amr Al-Saif, Michael A. Beer, and Andrew S. McCallion: Metrics of sequence constraint overlook regulatory sequences in an exhaustive analysis at phox2b
Genome Res. 2008 18: 252-260. Published in Advance December 10, 2007, 10.1101/gr.6929408 [Abstract] [Full Text] [PDF] [Supplemental Research Data]

Heiko Schober, Véronique Kalck, Miguel A. Vega-Palas, Griet Van Houwe, Daniel Sage, Michael Unser, Marc R. Gartenberg, and Susan M. Gasser: Controlled exchange of chromosomal arms reveals principles driving telomere interactions in yeast
Genome Res. 2008 18: 261-271. Published in Advance December 20, 2007, 10.1101/gr.6687808 [Abstract] [Full Text] [PDF] [Supplemental Research Data]

Naruo Nikoh, Kohjiro Tanaka, Fukashi Shibata, Natsuko Kondo, Masahiro Hizume, Masakazu Shimada, and Takema Fukatsu: Wolbachia genome integrated in an insect chromosome: Evolution and fate of laterally transferred endosymbiont genes
Genome Res. 2008 18: 272-280. Published in Advance December 11, 2007, 10.1101/gr.7144908 [Abstract] [Full Text] [PDF] [Supplemental Research Data]

Tobias Mourier, Celine Carret, Sue Kyes, Zoe Christodoulou, Paul P. Gardner, Daniel C. Jeffares, Robert Pinches, Bart Barrell, Matt Berriman, Sam Griffiths-Jones, Alasdair Ivens, Chris Newbold, and Arnab Pain: Genome-wide discovery and verification of novel structured RNAs in Plasmodium falciparum
Genome Res. 2008 18: 281-292. Published in Advance December 20, 2007, 10.1101/gr.6836108 [Abstract] [Full Text] [PDF] [Supplemental Research Data] OPEN ACCESS ARTICLE

Victor Kunin, Shaomei He, Falk Warnecke, S. Brook Peterson, Hector Garcia Martin, Matthew Haynes, Natalia Ivanova, Linda L. Blackall, Mya Breitbart, Forest Rohwer, Katherine D. McMahon, and Philip Hugenholtz: A bacterial metapopulation adapts locally to phage predation despite global dispersal
Genome Res. 2008 18: 293-297. Published in Advance December 12, 2007, 10.1101/gr.6835308 [Abstract] [Full Text] [PDF] [Supplemental Research Data] OPEN ACCESS ARTICLE

METHODS:

Gerton Lunter, Andrea Rocco, Naila Mimouni, Andreas Heger, Alexandre Caldeira, and Jotun Hein: Uncertainty in homology inferences: Assessing and improving genomic sequence alignment
Genome Res. 2008 18: 298-309. Published in Advance December 11, 2007, 10.1101/gr.6725608 [Abstract] [Full Text] [PDF] [Supplemental Research Data]

Thomas Abeel, Yvan Saeys, Eric Bonnet, Pierre Rouzé, and Yves Van de Peer: Generic eukaryotic core promoter prediction using structural features of DNA
Genome Res. 2008 18: 310-323. Published in Advance December 20, 2007, 10.1101/gr.6991408 [Abstract] [Full Text] [PDF] [Supplemental Research Data]

Mark J. Chaisson and Pavel A. Pevzner: Short read fragment assembly of bacterial genomes
Genome Res. 2008 18: 324-330. Published in Advance December 14, 2007, 10.1101/gr.7088808 [Abstract] [Full Text] [PDF]

Georgios S. Vernikos and Julian Parkhill: Resolving the structural features of genomic islands: A machine learning approach
Genome Res. 2008 18: 331-342. Published in Advance December 10, 2007, 10.1101/gr.7004508 [Abstract] [Full Text] [PDF] [Supplemental Research Data]

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