ARTICLES:

Daria V. Babushok, Kazuhiko Ohshima, Eric M. Ostertag, Xinsheng Chen, Yanfeng Wang, Prabhat K. Mandal, Norihiro Okada, Charles S. Abrams, and Haig H. Kazazian, Jr.

A novel testis ubiquitin-binding protein gene arose by exon shuffling in hominoids
Genome Res. 2007 17: 1129-1138. Published in Advance July 10, 2007, 10.1101/gr.6252107 [Abstract] [Full Text] [PDF] [Supplemental Research Data]  

LETTERS:

Maren Krull, Mirjan Petrusma, Wojciech Makalowski, Jürgen Brosius, and Jürgen Schmitz

Functional persistence of exonized mammalian-wide interspersed repeat elements (MIRs)
Genome Res. 2007 17: 1139-1145. Published in Advance July 10, 2007, 10.1101/gr.6320607 [Abstract] [Full Text] [PDF] [Supplemental Research Data]  

Lee H. Wong, Kate H. Brettingham-Moore, Lyn Chan, Julie M. Quach, Melissa A. Anderson, Emma L. Northrop, Ross Hannan, Richard Saffery, Margaret L. Shaw, Evan Williams, and K.H. Andy Choo

Centromere RNA is a key component for the assembly of nucleoproteins at the nucleolus and centromere
Genome Res. 2007 17: 1146-1160. Published in Advance July 10, 2007, 10.1101/gr.6022807 [Abstract] [Full Text] [PDF] OPEN ACCESS ARTICLE  

Daryi Wang, Huang-Mo Sung, Tzi-Yuan Wang, Chih-Jen Huang, Peggy Yang, Tiffany Chang, Yang-Chao Wang, Da-Lun Tseng, Jen-Pey Wu, Tso-Ching Lee, Ming-Che Shih, and Wen-Hsiung Li

Expression evolution in yeast genes of single-input modules is mainly due to changes in trans-acting factors
Genome Res. 2007 17: 1161-1169. Published in Advance July 5, 2007, 10.1101/gr.6328907 [Abstract] [Full Text] [PDF] [Supplemental Research Data]  

Heather E. Peckham, Robert E. Thurman, Yutao Fu, John A. Stamatoyannopoulos, William Stafford Noble, Kevin Struhl, and Zhiping Weng

Nucleosome positioning signals in genomic DNA
Genome Res. 2007 17: 1170-1177. Published in Advance July 9, 2007, 10.1101/gr.6101007 [Abstract] [Full Text] [PDF] [Supplemental Research Data]  

Laura Gómez-Valero, Eduardo P.C. Rocha, Amparo Latorre, and Francisco J. Silva

Reconstructing the ancestor of Mycobacterium leprae: The dynamics of gene loss and genome reduction
Genome Res. 2007 17: 1178-1185. Published in Advance July 10, 2007, 10.1101/gr.6360207 [Abstract] [Full Text] [PDF] [Supplemental Research Data]  

Gary P. Wang, Angela Ciuffi, Jeremy Leipzig, Charles C. Berry, and Frederic D. Bushman

HIV integration site selection: Analysis by massively parallel pyrosequencing reveals association with epigenetic modifications
Genome Res. 2007 17: 1186-1194. Published in Advance June 1, 2007, 10.1101/gr.6286907 [Abstract] [Full Text] [PDF] [Supplemental Research Data]  

METHODS:

Chunlin Wang, Yumi Mitsuya, Baback Gharizadeh, Mostafa Ronaghi, and Robert W. Shafer

Characterization of mutation spectra with ultra-deep pyrosequencing: Application to HIV-1 drug resistance
Genome Res. 2007 17: 1195-1201. Published in Advance June 28, 2007, 10.1101/gr.6468307 [Abstract] [Full Text] [PDF] [Supplemental Research Data] OPEN ACCESS ARTICLE  

Haoyi Wang, Mark Johnston, and Robi David Mitra

Calling cards for DNA-binding proteins
Genome Res. 2007 17: 1202-1209. Published in Advance July 10, 2007, 10.1101/gr.6510207 [Abstract] [Full Text] [PDF] [Supplemental Research Data]  

Tony Kwan, David Benovoy, Christel Dias, Scott Gurd, David Serre, Harry Zuzan, Tyson A. Clark, Anthony Schweitzer, Michelle K. Staples, Hui Wang, John E. Blume, Thomas J. Hudson, Rob Sladek, and Jacek Majewski

Heritability of alternative splicing in the human genome
Genome Res. 2007 17: 1210-1218. [Abstract] [Full Text] [PDF] [Supplemental Research Data]  

Adam Auton and Gil McVean

Recombination rate estimation in the presence of hotspots
Genome Res. 2007 17: 1219-1227. Published in Advance July 10, 2007, 10.1101/gr.6386707 [Abstract] [Full Text] [PDF] [Supplemental Research Data]  

RESOURCES:

Jennifer A. Greenhall, Matthew A. Zapala, Mario Cáceres, Ondrej Libiger, Carrolee Barlow, Nicholas J. Schork, and David J. Lockhart

Detecting genetic variation in microarray expression data
Genome Res. 2007 17: 1228-1235. Published in Advance July 3, 2007, 10.1101/gr.6307307 [Abstract] [Full Text] [PDF] [Supplemental Research Data]  

Ming Zhan, Haruyoshi Yamaza, Yu Sun, Jason Sinclair, Huai Li, and Sige Zou

Temporal and spatial transcriptional profiles of aging in Drosophila melanogaster
Genome Res. 2007 17: 1236-1243. Published in Advance July 10, 2007, 10.1101/gr.6216607 [Abstract] [Full Text] [PDF] [Supplemental Research Data]  

ERRATA:

Errata
Genome Res. 2007 17: 1244. [Full Text] [PDF]  

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