PERSPECTIVE:

Tobias Bollenbach, Kalin Vetsigian, and Roy Kishony

Evolution and multilevel optimization of the genetic code
Genome Res. 2007 17: 401-404. Published in Advance March 9, 2007, 10.1101/gr.6144007 [Abstract] [Full Text] [PDF]  

LETTERS:

Shalev Itzkovitz and Uri Alon

The genetic code is nearly optimal for allowing additional information within protein-coding sequences
Genome Res. 2007 17: 405-412. Published in Advance February 9, 2007, 10.1101/gr.5987307 [Abstract] [Full Text] [PDF] [Supplemental Research Data] OPEN ACCESS ARTICLE  

William J. Murphy, Thomas H. Pringle, Tess A. Crider, Mark S. Springer, and Webb Miller

Using genomic data to unravel the root of the placental mammal phylogeny
Genome Res. 2007 17: 413-421. Published in Advance February 23, 2007, 10.1101/gr.5918807 [Abstract] [Full Text] [PDF] [Supplemental Research Data]  

John K. Pace, II and Cédric Feschotte

The evolutionary history of human DNA transposons: Evidence for intense activity in the primate lineage
Genome Res. 2007 17: 422-432. Published in Advance March 5, 2007, 10.1101/gr.5826307 [Abstract] [Full Text] [PDF] [Supplemental Research Data]  

Zeenath Jehan, Sambandam Vallinayagam, Shrish Tiwari, Suman Pradhan, Lalji Singh, Amritha Suresh, Hemakumar M. Reddy, Y.R. Ahuja, and Rachel A. Jesudasan

Novel noncoding RNA from human Y distal heterochromatic block (Yq12) generates testis-specific chimeric CDC2L2
Genome Res. 2007 17: 433-440. Published in Advance November 9, 2006, 10.1101/gr.5155706 [Abstract] [Full Text] [PDF]  

Bejon Kumar Bhowmick, Yoko Satta, and Naoyuki Takahata

The origin and evolution of human ampliconic gene families and ampliconic structure
Genome Res. 2007 17: 441-450. Published in Advance December 21, 2006, 10.1101/gr.5734907 [Abstract] [Full Text] [PDF] [Supplemental Research Data]  

Melanie Babcock, Svetlana Yatsenko, Pawel Stankiewicz, James R. Lupski, and Bernice E. Morrow

AT-rich repeats associated with chromosome 22q11.2 rearrangement disorders shape human genome architecture on Yq12
Genome Res. 2007 17: 451-460. Published in Advance February 6, 2007, 10.1101/gr.5651507 [Abstract] [Full Text] [PDF] [Supplemental Research Data]  

Hiroki Kurahashi, Hidehito Inagaki, Eriko Hosoba, Takema Kato, Tamae Ohye, Hiroshi Kogo, and Beverly S. Emanuel

Molecular cloning of a translocation breakpoint hotspot in 22q11
Genome Res. 2007 17: 461-469. Published in Advance January 31, 2007, 10.1101/gr.5769507 [Abstract] [Full Text] [PDF]  

Anthony L. Gotter, Manjunath A. Nimmakayalu, G. Reza Jalali, April M. Hacker, Jacob Vorstman, Danielle Conforto Duffy, Livija Medne, and Beverly S. Emanuel

A palindrome-driven complex rearrangement of 22q11.2 and 8q24.1 elucidated using novel technologies
Genome Res. 2007 17: 470-481. Published in Advance March 9, 2007, 10.1101/gr.6130907 [Abstract] [Full Text] [PDF] [Supplemental Research Data]  

Tamim H. Shaikh, Ronald J. O’Connor, Mary Ella Pierpont, James McGrath, April M. Hacker, Manjunath Nimmakayalu, Elizabeth Geiger, Beverly S. Emanuel, and Sulagna C. Saitta

Low copy repeats mediate distal chromosome 22q11.2 deletions: Sequence analysis predicts breakpoint mechanisms
Genome Res. 2007 17: 482-491. Published in Advance March 9, 2007, 10.1101/gr.5986507 [Abstract] [Full Text] [PDF] [Supplemental Research Data]  

Quinn M. Mitrovich, Brian B. Tuch, Christine Guthrie, and Alexander D. Johnson

Computational and experimental approaches double the number of known introns in the pathogenic yeast Candida albicans
Genome Res. 2007 17: 492-502. Published in Advance March 9, 2007, 10.1101/gr.6111907 [Abstract] [Full Text] [PDF] [Supplemental Research Data]  

METHODS:

Zhihong Zhang, Jay R. Hesselberth, and Stanley Fields

Genome-wide identification of spliced introns using a tiling microarray
Genome Res. 2007 17: 503-509. Published in Advance March 9, 2007, 10.1101/gr.6049107 [Abstract] [Full Text] [PDF] [Supplemental Research Data] OPEN ACCESS ARTICLE  

Jacob G. Bundy, Balázs Papp, Rebecca Harmston, Roy A. Browne, Edward M. Clayson, Nicola Burton, Richard J. Reece, Stephen G. Oliver, and Kevin M. Brindle

Evaluation of predicted network modules in yeast metabolism using NMR-based metabolite profiling
Genome Res. 2007 17: 510-519. Published in Advance March 5, 2007, 10.1101/gr.5662207 [Abstract] [Full Text] [PDF] [Supplemental Research Data] OPEN ACCESS ARTICLE  

Albert Tenesa, Pau Navarro, Ben J. Hayes, David L. Duffy, Geraldine M. Clarke, Mike E. Goddard, and Peter M. Visscher

Recent human effective population size estimated from linkage disequilibrium
Genome Res. 2007 17: 520-526. Published in Advance March 9, 2007, 10.1101/gr.6023607 [Abstract] [Full Text] [PDF]  

RESOURCES:

Sailu Yellaboina, Kshama Goyal, and Shekhar C. Mande

Inferring genome-wide functional linkages in E. coli by combining improved genome context methods: Comparison with high-throughput experimental data
Genome Res. 2007 17: 527-535. Published in Advance March 5, 2007, 10.1101/gr.5900607 [Abstract] [Full Text] [PDF] [Supplemental Research Data] OPEN ACCESS ARTICLE  

Yanhui Hu, Andreas Rolfs, Bhupinder Bhullar, Tellamraju V. S. Murthy, Cong Zhu, Michael F. Berger, Anamaria A. Camargo, Fontina Kelley, Seamus McCarron, Daniel Jepson, Aaron Richardson, Jacob Raphael, Donna Moreira, Elena Taycher, Dongmei Zuo, Stephanie Mohr, Michael F. Kane, Janice Williamson, Andrew Simpson, Martha L. Bulyk, Edward Harlow, Gerald Marsischky, Richard D. Kolodner, and Joshua LaBaer

Approaching a complete repository of sequence-verified protein-encoding clones for Saccharomyces cerevisiae
Genome Res. 2007 17: 536-543. Published in Advance February 23, 2007, 10.1101/gr.6037607 [Abstract] [Full Text] [PDF] [Supplemental Research Data]  

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