COMMENTARY:

Phil Green

2x genomes—Does depth matter?
Genome Res. 2007 17: 1547-1549. [Full Text] [PDF] OPEN ACCESS ARTICLE  

ARTICLES:

Xiaoqin Xu, Mark Bieda, Victor X. Jin, Alina Rabinovich, Mathew J. Oberley, Roland Green, and Peggy J. Farnham

A comprehensive ChIP–chip analysis of E2F1, E2F4, and E2F6 in normal and tumor cells reveals interchangeable roles of E2F family members
Genome Res. 2007 17: 1550-1561. Published in Advance October 1, 2007, 10.1101/gr.6783507 [Abstract] [Full Text] [PDF] [Supplemental Research Data]  

Heidi G. Parker, Anna V. Kukekova, Dayna T. Akey, Orly Goldstein, Ewen F. Kirkness, Kathleen C. Baysac, Dana S. Mosher, Gustavo D. Aguirre, Gregory M. Acland, and Elaine A. Ostrander

Breed relationships facilitate fine-mapping studies: A 7.8-kb deletion cosegregates with Collie eye anomaly across multiple dog breeds
Genome Res. 2007 17: 1562-1571. Published in Advance October 4, 2007, 10.1101/gr.6772807 [Abstract] [Full Text] [PDF] [Supplemental Research Data]  

Minglei Wang, Liudmila S. Yafremava, Derek Caetano-Anollés, Jay E. Mittenthal, and Gustavo Caetano-Anollés

Reductive evolution of architectural repertoires in proteomes and the birth of the tripartite world
Genome Res. 2007 17: 1572-1585. Published in Advance October 1, 2007, 10.1101/gr.6454307 [Abstract] [Full Text] [PDF] [Supplemental Research Data]  

LETTERS:

Nurit Paz, Erez Y. Levanon, Ninette Amariglio, Amy B. Heimberger, Zvi Ram, Shlomi Constantini, Zohar S. Barbash, Konstantin Adamsky, Michal Safran, Avi Hirschberg, Meir Krupsky, Issachar Ben-Dov, Simona Cazacu, Tom Mikkelsen, Chaya Brodie, Eli Eisenberg, and Gideon Rechavi

Altered adenosine-to-inosine RNA editing in human cancer
Genome Res. 2007 17: 1586-1595. Published in Advance October 1, 2007, 10.1101/gr.6493107 [Abstract] [Full Text] [PDF] [Supplemental Research Data]  

Chris Wallace, Richard J. Dobson, Patricia B. Munroe, and Mark J. Caulfield

Information capture using SNPs from HapMap and whole-genome chips differs in a sample of inflammatory and cardiovascular gene-centric regions from genome-wide estimates
Genome Res. 2007 17: 1596-1602. Published in Advance September 25, 2007, 10.1101/gr.5996407 [Abstract] [Full Text] [PDF] [Supplemental Research Data]  

Laurie Gordon, Shan Yang, Mary Tran-Gyamfi, Dan Baggott, Mari Christensen, Aaron Hamilton, Richard Crooijmans, Martien Groenen, Susan Lucas, Ivan Ovcharenko, and Lisa Stubbs

Comparative analysis of chicken chromosome 28 provides new clues to the evolutionary fragility of gene-rich vertebrate regions
Genome Res. 2007 17: 1603-1613. Published in Advance October 5, 2007, 10.1101/gr.6775107 [Abstract] [Full Text] [PDF] [Supplemental Research Data]  

Shisong Ma, Qingqiu Gong, and Hans J. Bohnert

An Arabidopsis gene network based on the graphical Gaussian model
Genome Res. 2007 17: 1614-1625. Published in Advance October 5, 2007, 10.1101/gr.6911207 [Abstract] [Full Text] [PDF] [Supplemental Research Data]  

Tomer Shlomi, Markus Herrgard, Vasiliy Portnoy, Efrat Naim, Bernhard Ø. Palsson, Roded Sharan, and Eytan Ruppin

Systematic condition-dependent annotation of metabolic genes
Genome Res. 2007 17: 1626-1633. Published in Advance September 25, 2007, 10.1101/gr.6678707 [Abstract] [Full Text] [PDF] [Supplemental Research Data]  

Marius K. Lemberg and Matthew Freeman

Functional and evolutionary implications of enhanced genomic analysis of rhomboid intramembrane proteases
Genome Res. 2007 17: 1634-1646. Published in Advance October 15, 2007, 10.1101/gr.6425307 [Abstract] [Full Text] [PDF] [Supplemental Research Data]  

Thierry Wirth, Giovanna Morelli, Barica Kusecek, Alex van Belkum, Cindy van der Schee, Axel Meyer, and Mark Achtman

The rise and spread of a new pathogen: Seroresistant Moraxella catarrhalis
Genome Res. 2007 17: 1647-1656. Published in Advance September 25, 2007, 10.1101/gr.6122607 [Abstract] [Full Text] [PDF] [Supplemental Research Data]  

Guillaume Blanc, Hiroyuki Ogata, Catherine Robert, Stéphane Audic, Jean-Michel Claverie, and Didier Raoult

Lateral gene transfer between obligate intracellular bacteria: Evidence from the Rickettsia massiliae genome
Genome Res. 2007 17: 1657-1664. Published in Advance October 4, 2007, 10.1101/gr.6742107 [Abstract] [Full Text] [PDF] [Supplemental Research Data]  

METHODS:

Kai Wang, Mingyao Li, Dexter Hadley, Rui Liu, Joseph Glessner, Struan F.A. Grant, Hakon Hakonarson, and Maja Bucan

PennCNV: An integrated hidden Markov model designed for high-resolution copy number variation detection in whole-genome SNP genotyping data
Genome Res. 2007 17: 1665-1674. Published in Advance October 5, 2007, 10.1101/gr.6861907 [Abstract] [Full Text] [PDF] [Supplemental Research Data]  

RESOURCES:

Joan U. Pontius, James C. Mullikin, Douglas R. Smith, Agencourt Sequencing Team, Kerstin Lindblad-Toh, Sante Gnerre, Michele Clamp, Jean Chang, Robert Stephens, Beena Neelam, Natalia Volfovsky, Alejandro A. Schäffer, Richa Agarwala, Kristina Narfström, William J. Murphy, Urs Giger, Alfred L. Roca, Agostinho Antunes, Marilyn Menotti-Raymond, Naoya Yuhki, Jill Pecon-Slattery, Warren E. Johnson, Guillaume Bourque, Glenn Tesler, NISC Comparative Sequencing Program, and Stephen J. O’Brien

Initial sequence and comparative analysis of the cat genome
Genome Res. 2007 17: 1675-1689. [Abstract] [Full Text] [PDF] [Supplemental Research Data]  

Robert Lyle, Paola Prandini, Kazutoyo Osoegawa, Boudewijn ten Hallers, Sean Humphray, Baoli Zhu, Eduardo Eyras, Robert Castelo, Christine P. Bird, Sarantos Gagos, Carol Scott, Antony Cox, Samuel Deutsch, Catherine Ucla, Marc Cruts, Sophie Dahoun, Xinwei She, Frederique Bena, Sheng-Yue Wang, Christine Van Broeckhoven, Evan E. Eichler, Roderic Guigo, Jane Rogers, Pieter J. de Jong, Alexandre Reymond, and Stylianos E. Antonarakis

Islands of euchromatin-like sequence and expressed polymorphic sequences within the short arm of human chromosome 21
Genome Res. 2007 17: 1690-1696. Published in Advance September 25, 2007, 10.1101/gr.6675307 [Abstract] [Full Text] [PDF] [Supplemental Research Data]  

Juliane C. Dohm, Claudio Lottaz, Tatiana Borodina, and Heinz Himmelbauer

SHARCGS, a fast and highly accurate short-read assembly algorithm for de novo genomic sequencing
Genome Res. 2007 17: 1697-1706. Published in Advance October 1, 2007, 10.1101/gr.6435207 [Abstract] [Full Text] [PDF] [Supplemental Research Data]  

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