REVIEW:

Anthony C. Forster and George M. Church

Synthetic biology projects in vitro
Genome Res. 2007 17: 1-6. Published in Advance December 6, 2006, 10.1101/gr.5776007 [Abstract] [Full Text] [PDF]  

ARTICLES:

Philippe Normand, Pascal Lapierre, Louis S. Tisa, Johann Peter Gogarten, Nicole Alloisio, Emilie Bagnarol, Carla A. Bassi, Alison M. Berry, Derek M. Bickhart, Nathalie Choisne, Arnaud Couloux, Benoit Cournoyer, Stephane Cruveiller, Vincent Daubin, Nadia Demange, Maria Pilar Francino, Eugene Goltsman, Ying Huang, Olga R. Kopp, Laurent Labarre, Alla Lapidus, Celine Lavire, Joelle Marechal, Michele Martinez, Juliana E. Mastronunzio, Beth C. Mullin, James Niemann, Pierre Pujic, Tania Rawnsley, Zoe Rouy, Chantal Schenowitz, Anita Sellstedt, Fernando Tavares, Jeffrey P. Tomkins, David Vallenet, Claudio Valverde, Luis G. Wall, Ying Wang, Claudine Medigue, and David R. Benson

Genome characteristics of facultatively symbiotic Frankia sp. strains reflect host range and host plant biogeography
Genome Res. 2007 17: 7-15. Published in Advance December 6, 2006, 10.1101/gr.5798407 [Abstract] [Full Text] [PDF]  

LETTERS:

Feng-Chi Chen, Chueng-Jong Chen, Wen-Hsiung Li, and Trees-Juen Chuang

Human-specific insertions and deletions inferred from mammalian genome sequences
Genome Res. 2007 17: 16-22. Published in Advance November 9, 2006, 10.1101/gr.5429606 [Abstract] [Full Text] [PDF] [Supplemental Research Data]  

Jasmin Coulombe-Huntington and Jacek Majewski

Characterization of intron loss events in mammals
Genome Res. 2007 17: 23-32. Published in Advance November 15, 2006, 10.1101/gr.5703406 [Abstract] [Full Text] [PDF] [Supplemental Research Data] OPEN ACCESS ARTICLE  

Kenji Ichiyanagi, Ryo Nakajima, Masaki Kajikawa, and Norihiro Okada

Novel retrotransposon analysis reveals multiple mobility pathways dictated by hosts
Genome Res. 2007 17: 33-41. Published in Advance December 6, 2006, 10.1101/gr.5542607 [Abstract] [Full Text] [PDF] [Supplemental Research Data]  

Christian Voolstra, Diethard Tautz, Patrick Farbrother, Ludwig Eichinger, and Bettina Harr

Contrasting evolution of expression differences in the testis between species and subspecies of the house mouse
Genome Res. 2007 17: 42-49. Published in Advance October 12, 2006, 10.1101/gr.5683806 [Abstract] [Full Text] [PDF] [Supplemental Research Data]  

João P. Gomes, William J. Bruno, Alexandra Nunes, Nicole Santos, Carlos Florindo, Maria J. Borrego, and Deborah Dean

Evolution of Chlamydia trachomatis diversity occurs by widespread interstrain recombination involving hotspots
Genome Res. 2007 17: 50-60. Published in Advance November 7, 2006, 10.1101/gr.5674706 [Abstract] [Full Text] [PDF] [Supplemental Research Data]  

Xavier Didelot, Mark Achtman, Julian Parkhill, Nicholas R. Thomson, and Daniel Falush

A bimodal pattern of relatedness between the Salmonella Paratyphi A and Typhi genomes: Convergence or divergence by homologous recombination?
Genome Res. 2007 17: 61-68. Published in Advance November 7, 2006, 10.1101/gr.5512906 [Abstract] [Full Text] [PDF] [Supplemental Research Data]  

METHODS:

Scott J. Emrich, W. Brad Barbazuk, Li Li, and Patrick S. Schnable

Gene discovery and annotation using LCM-454 transcriptome sequencing
Genome Res. 2007 17: 69-73. Published in Advance November 9, 2006, 10.1101/gr.5145806 [Abstract] [Full Text] [PDF] OPEN ACCESS ARTICLE  

Tae-young Roh, Gang Wei, Catherine M. Farrell, and Keji Zhao

Genome-wide prediction of conserved and nonconserved enhancers by histone acetylation patterns
Genome Res. 2007 17: 74-81. Published in Advance November 29, 2006, 10.1101/gr.5767907 [Abstract] [Full Text] [PDF] [Supplemental Research Data] OPEN ACCESS ARTICLE  

Julian T. Forton, Irina A. Udalova, Susana Campino, Kirk A. Rockett, Jeremy Hull, and Dominic P. Kwiatkowski

Localization of a long-range cis-regulatory element of IL13 by allelic transcript ratio mapping
Genome Res. 2007 17: 82-87. Published in Advance November 29, 2006, 10.1101/gr.5663007 [Abstract] [Full Text] [PDF] [Supplementary Research Data]  

Susana Eyheramendy, Jonathan Marchini, Gilean McVean, Simon Myers, and Peter Donnelly

A model-based approach to capture genetic variation for future association studies
Genome Res. 2007 17: 88-95. Published in Advance November 9, 2006, 10.1101/gr.5675406 [Abstract] [Full Text] [PDF] [Supplemental Research Data]  

Peristera Paschou, Michael W. Mahoney, Asif Javed, Judith R. Kidd, Andrew J. Pakstis, Sheng Gu, Kenneth K. Kidd, and Petros Drineas

Intra- and interpopulation genotype reconstruction from tagging SNPs
Genome Res. 2007 17: 96-107. Published in Advance December 6, 2006, 10.1101/gr.5741407 [Abstract] [Full Text] [PDF] [Supplemental Research Data]  

Jaswinder Khattra, Allen D. Delaney, Yongjun Zhao, Asim Siddiqui, Jennifer Asano, Helen McDonald, Pawan Pandoh, Noreen Dhalla, Anna-liisa Prabhu, Kevin Ma, Stephanie Lee, Adrian Ally, Angela Tam, Danne Sa, Sean Rogers, David Charest, Jeff Stott, Scott Zuyderduyn, Richard Varhol, Connie Eaves, Steven Jones, Robert Holt, Martin Hirst, Pamela A. Hoodless, and Marco A. Marra

Large-scale production of SAGE libraries from microdissected tissues, flow-sorted cells, and cell lines
Genome Res. 2007 17: 108-116. Published in Advance November 29, 2006, 10.1101/gr.5488207 [Abstract] [Full Text] [PDF] [Supplemental Research Data]  

RESOURCES:

Eva K. Freyhult, Jonathan P. Bollback, and Paul P. Gardner

Exploring genomic dark matter: A critical assessment of the performance of homology search methods on noncoding RNA
Genome Res. 2007 17: 117-125. Published in Advance December 6, 2006, 10.1101/gr.5890907 [Abstract] [Full Text] [PDF] [Supplemental Research Data]  

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