LETTERS:

Marina Bibikova, Eugene Chudin, Bonnie Wu, Lixin Zhou, Eliza Wickham Garcia, Ying Liu, Soojung Shin, Todd W. Plaia, Jonathan M. Auerbach, Dan E. Arking, Rodolfo Gonzalez, Jeremy Crook, Bruce Davidson, Thomas C. Schulz, Allan Robins, Aparna Khanna, Peter Sartipy, Johan Hyllner, Padmavathy Vanguri, Smita Savant-Bhonsale, Alan K. Smith, Aravinda Chakravarti, Anirban Maitra, Mahendra Rao, David L. Barker, Jeanne F. Loring, and Jian-Bing Fan

Human embryonic stem cells have a unique epigenetic signature
Genome Res. 2006 16: 1075-1083. Published in Advance August 9, 2006, 10.1101/gr.5319906 [Abstract] [Full Text] [PDF] [Supplemental Research Data] OPEN ACCESS ARTICLE  

John C. Fyfe, Marilyn Menotti-Raymond, Victor A. David, Lars Brichta, Alejandro A. Schäffer, Richa Agarwala, William J. Murphy, William J. Wedemeyer, Brittany L. Gregory, Bethany G. Buzzell, Meghan C. Drummond, Brunhilde Wirth, and Stephen J. O'Brien

An ~140-kb deletion associated with feline spinal muscular atrophy implies an essential LIX1 function for motor neuron survival
Genome Res. 2006 16: 1084-1090. Published in Advance August 9, 2006, 10.1101/gr.5268806 [Abstract] [Full Text] [PDF] [Supplemental Research Data]  

Jussara S. Michaloski, Pedro A.F. Galante, and Bettina Malnic

Identification of potential regulatory motifs in odorant receptor genes by analysis of promoter sequences
Genome Res. 2006 16: 1091-1098. Published in Advance August 10, 2006, 10.1101/gr.5185406 [Abstract] [Full Text] [PDF] [Supplemental Research Data]  

Olga Zhaxybayeva, J. Peter Gogarten, Robert L. Charlebois, W. Ford Doolittle, and R. Thane Papke

Phylogenetic analyses of cyanobacterial genomes: Quantification of horizontal gene transfer events
Genome Res. 2006 16: 1099-1108. Published in Advance August 9, 2006, 10.1101/gr.5322306 [Abstract] [Full Text] [PDF] [Supplemental Reseach Data]  

Sergio Callejas, Vanessa Leech, Christopher Reitter, and Sara Melville

Hemizygous subtelomeres of an African trypanosome chromosome may account for over 75% of chromosome length
Genome Res. 2006 16: 1109-1118. Published in Advance August 9, 2006, 10.1101/gr.5147406 [Abstract] [Full Text] [PDF] [Supplemental Research Data]  

Asis Khan, Ulrike Böhme, Krystyna A. Kelly, Ellen Adlem, Karen Brooks, Mark Simmonds, Karen Mungall, Michael A. Quail, Claire Arrowsmith, Tracey Chillingworth, Carol Churcher, David Harris, Matthew Collins, Nigel Fosker, Audrey Fraser, Zahra Hance, Kay Jagels, Sharon Moule, Lee Murphy, Susan O'Neil, Marie-Adele Rajandream, David Saunders, Kathy Seeger, Sally Whitehead, Thomas Mayr, Xuenan Xuan, Junichi Watanabe, Yutaka Suzuki, Hiroyuki Wakaguri, Sumio Sugano, Chihiro Sugimoto, Ian Paulsen, Aaron J. Mackey, David S. Roos, Neil Hall, Matthew Berriman, Bart Barrell, L. David Sibley, and James W. Ajioka

Common inheritance of chromosome Ia associated with clonal expansion of Toxoplasma gondii
Genome Res. 2006 16: 1119-1125. Published in Advance August 10, 2006, 10.1101/gr.5318106 [Abstract] [Full Text] [PDF] [Supplemental Research Data]  

METHODS:

Michael Seringhaus, Alberto Paccanaro, Anthony Borneman, Michael Snyder, and Mark Gerstein

Predicting essential genes in fungal genomes
Genome Res. 2006 16: 1126-1135. Published in Advance August 9, 2006, 10.1101/gr.5144106 [Abstract] [Full Text] [PDF] [Supplemental Research Data] OPEN ACCESS ARTICLE  

Daniel A. Peiffer, Jennie M. Le, Frank J. Steemers, Weihua Chang, Tony Jenniges, Francisco Garcia, Kirt Haden, Jiangzhen Li, Chad A. Shaw, John Belmont, Sau Wai Cheung, Richard M. Shen, David L. Barker, and Kevin L. Gunderson

High-resolution genomic profiling of chromosomal aberrations using Infinium whole-genome genotyping
Genome Res. 2006 16: 1136-1148. Published in Advance August 9, 2006, 10.1101/gr.5402306 [Abstract] [Full Text] [PDF] [Supplemental Research Data] OPEN ACCESS ARTICLE  

Sharon J. Diskin, Thomas Eck, Joel Greshock, Yael P. Mosse, Tara Naylor, Christian J. Stoeckert, Jr., Barbara L. Weber, John M. Maris, and Gregory R. Grant

STAC: A method for testing the significance of DNA copy number aberrations across multiple array-CGH experiments
Genome Res. 2006 16: 1149-1158. Published in Advance August 9, 2006, 10.1101/gr.5076506 [Abstract] [Full Text] [PDF] [Supplemental Research Data] OPEN ACCESS ARTICLE  

Carol Soderlund, William Nelson, Austin Shoemaker, and Andrew Paterson

SyMAP: A system for discovering and viewing syntenic regions of FPC maps
Genome Res. 2006 16: 1159-1168. [Abstract] [Full Text] [PDF] OPEN ACCESS ARTICLE  

Jason Flannick, Antal Novak, Balaji S. Srinivasan, Harley H. McAdams, and Serafim Batzoglou

Græmlin: General and robust alignment of multiple large interaction networks
Genome Res. 2006 16: 1169-1181. Published in Advance August 9, 2006, 10.1101/gr.5235706 [Abstract] [Full Text] [PDF] [Supplemental Research Data] OPEN ACCESS ARTICLE  

RESOURCES:

Ryan E. Mills, Christopher T. Luttig, Christine E. Larkins, Adam Beauchamp, Circe Tsui, W. Stephen Pittard, and Scott E. Devine

An initial map of insertion and deletion (INDEL) variation in the human genome
Genome Res. 2006 16: 1182-1190. Published in Advance August 10, 2006, 10.1101/gr.4565806 [Abstract] [Full Text] [PDF] [Supplemental Reseach Data]  

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