PERSPECTIVE:

Michael Freeling and Brian C. Thomas

Gene-balanced duplications, like tetraploidy, provide predictable drive to increase morphological complexity
Genome Res. 2006 16: 805-814. [Abstract] [Full Text] [PDF] [Supplemental Research Data]  

ARTICLES:

Mariko Kondo, Ute Hornung, Indrajit Nanda, Shuichiro Imai, Takashi Sasaki, Atsushi Shimizu, Shuichi Asakawa, Hiroshi Hori, Michael Schmid, Nobuyoshi Shimizu, and Manfred Schartl

Genomic organization of the sex-determining and adjacent regions of the sex chromosomes of medaka
Genome Res. 2006 16: 815-826. Published in Advance June 2, 2006, 10.1101/gr.5016106 [Abstract] [Full Text] [PDF] [Supplemental Research Data]  

Rays H.Y. Jiang, Rob Weide, Peter J.I. van de Vondervoort, and Francine Govers

Amplification generates modular diversity at an avirulence locus in the pathogen Phytophthora
Genome Res. 2006 16: 827-840. [Abstract] [Full Text] [PDF] [Supplemental Research Data]  

Amardeep Kaur, Min Pan, Megan Meislin, Marc T. Facciotti, Raafat El-Gewely, and Nitin S. Baliga

A systems view of haloarchaeal strategies to withstand stress from transition metals
Genome Res. 2006 16: 841-854. Published in Advance June 2, 2006, 10.1101/gr.5189606 [Abstract] [Full Text] [PDF] [Supplemental Research Data]  

LETTERS:

Shyam Prabhakar, Francis Poulin, Malak Shoukry, Veena Afzal, Edward M. Rubin, Olivier Couronne, and Len A. Pennacchio

Close sequence comparisons are sufficient to identify human cis-regulatory elements
Genome Res. 2006 16: 855-863. Published in Advance June 12, 2006, 10.1101/gr.4717506 [Abstract] [Full Text] [PDF] [Supplemental Research Data]  

Hidenori Nishihara, Arian F.A. Smit, and Norihiro Okada

Functional noncoding sequences derived from SINEs in the mammalian genome
Genome Res. 2006 16: 864-874. Published in Advance May 22, 2006, 10.1101/gr.5255506 [Abstract] [Full Text] [PDF] [Supplemental Research Data] OPEN ACCESS ARTICLE  

Daniel L. Halligan and Peter D. Keightley

Ubiquitous selective constraints in the Drosophila genome revealed by a genome-wide interspecies comparison
Genome Res. 2006 16: 875-884. Published in Advance June 2, 2006, 10.1101/gr.5022906 [Abstract] [Full Text] [PDF] [Supplemental Research Data]  

Elfar Torarinsson, Milena Sawera, Jakob H. Havgaard, Merete Fredholm, and Jan Gorodkin

Thousands of corresponding human and mouse genomic regions unalignable in primary sequence contain common RNA structure
Genome Res. 2006 16: 885-889. Published in Advance June 2, 2006, 10.1101/gr.5226606 [Abstract] [Full Text] [PDF]  

Sharon L. Squazzo, Henriette O’Geen, Vitalina M. Komashko, Sheryl R. Krig, Victor X. Jin, Sung-wook Jang, Raphael Margueron, Danny Reinberg, Roland Green, and Peggy J. Farnham

Suz12 binds to silenced regions of the genome in a cell-type-specific manner
Genome Res. 2006 16: 890-900. Published in Advance June 2, 2006, 10.1101/gr.5306606 [Abstract] [Full Text] [PDF] [Supplemental Research Data]  

Jeong Do Kim, Angela K. Hinz, Anne Bergmann, Jennifer M. Huang, Ivan Ovcharenko, Lisa Stubbs, and Joomyeong Kim

Identification of clustered YY1 binding sites in imprinting control regions
Genome Res. 2006 16: 901-911. Published in Advance June 7, 2006, 10.1101/gr.5091406 [Abstract] [Full Text] [PDF] [Supplemental Research Data]  

Ian A. Swinburne, Clifford A. Meyer, X. Shirley Liu, Pamela A. Silver, and Alexander S. Brodsky

Genomic localization of RNA binding proteins reveals links between pre-mRNA processing and transcription
Genome Res. 2006 16: 912-921. Published in Advance June 12, 2006, 10.1101/gr.5211806 [Abstract] [Full Text] [PDF] [Supplemental Research Data]  

Miao Sun, Laurence D. Hurst, Gordon G. Carmichael, and Jianjun Chen

Evidence for variation in abundance of antisense transcripts between multicellular animals but no relationship between antisense transcription and organismic complexity
Genome Res. 2006 16: 922-933. Published in Advance June 12, 2006, 10.1101/gr.5210006 [Abstract] [Full Text] [PDF] [Supplemental Research Data]  

Brian C. Thomas, Brent Pedersen, and Michael Freeling

Following tetraploidy in an Arabidopsis ancestor, genes were removed preferentially from one homeolog leaving clusters enriched in dose-sensitive genes
Genome Res. 2006 16: 934-946. Published in Advance June 7, 2006, 10.1101/gr.4708406 [Abstract] [Full Text] [PDF] [Supplemental Research Data]  

ERRATA:

Erratum
Genome Res. 2006 16: 947. [Full Text] [PDF]  

Erratum
Genome Res. 2006 16: 947. [Full Text] [PDF]  

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