ARTICLES:

Gayle K. McEwen, Adam Woolfe, Debbie Goode, Tanya Vavouri, Heather Callaway, and Greg Elgar

Ancient duplicated conserved noncoding elements in vertebrates: A genomic and functional analysis
Genome Res. 2006 16: 451-465. Published in Advance March 13, 2006, 10.1101/gr.4143406 [Abstract] [Full Text] [PDF] [Supplemental Research Data]  

Edwin J. Ostrin, Yumei Li, Kristi Hoffman, Jing Liu, Keqing Wang, Li Zhang, Graeme Mardon, and Rui Chen

Genome-wide identification of direct targets of the Drosophila retinal determination protein Eyeless
Genome Res. 2006 16: 466-476. Published in Advance March 13, 2006, 10.1101/gr.4673006 [Abstract] [Full Text] [PDF] [XY minisatellite sequence]  

LETTERS:

John A. McNeil, Kelly P. Smith, Lisa L. Hall, and Jeanne B. Lawrence

Word frequency analysis reveals enrichment of dinucleotide repeats on the human X chromosome and [GATA]_n in the X escape region
Genome Res. 2006 16: 477-484. Published in Advance March 13, 2006, 10.1101/gr.4627606 [Abstract] [Full Text] [PDF] [Supplemental Research Data]  

Kazuhiro Nakayama and Takafumi Ishida

Alu-mediated 100-kb deletion in the primate genome: The loss of the agouti signaling protein gene in the lesser apes
Genome Res. 2006 16: 485-490. [Abstract] [Full Text] [PDF] [Supplemental Research Data]  

Victor Guryev, Marco J. Koudijs, Eugene Berezikov, Stephen L. Johnson, Ronald H.A. Plasterk, Fredericus J.M. van Eeden, and Edwin Cuppen

Genetic variation in the zebrafish
Genome Res. 2006 16: 491-497. Published in Advance March 13, 2006, 10.1101/gr.4791006 [Abstract] [Full Text] [PDF]  

Kevin Thornton, Doris Bachtrog, and Peter Andolfatto

X chromosomes and autosomes evolve at similar rates in Drosophila: No evidence for faster-X protein evolution
Genome Res. 2006 16: 498-504. Published in Advance March 6, 2006, 10.1101/gr.4447906 [Abstract] [Full Text] [PDF]  

Dmitry B. Malko, Vsevolod J. Makeev, Andrey A. Mironov, and Mikhail S. Gelfand

Evolution of exon–intron structure and alternative splicing in fruit flies and malarial mosquito genomes
Genome Res. 2006 16: 505-509. Published in Advance March 6, 2006, 10.1101/gr.4236606 [Abstract] [Full Text] [PDF] [Supplemental Research Data]  

Christopher Maher, Lincoln Stein, and Doreen Ware

Evolution of Arabidopsis microRNA families through duplication events
Genome Res. 2006 16: 510-519. Published in Advance March 6, 2006, 10.1101/gr.4680506 [Abstract] [Full Text] [PDF] [Supplemental Research Data]  

Gregory W. Carter, Steffen Rupp, Gerald R. Fink, and Timothy Galitski

Disentangling information flow in the Ras-cAMP signaling network
Genome Res. 2006 16: 520-526. Published in Advance March 13, 2006, 10.1101/gr.4473506 [Abstract] [Full Text] [PDF] [Supplemental Research Data]  

METHODS:

Baochuan Lin, Zheng Wang, Gary J. Vora, Jennifer A. Thornton, Joel M. Schnur, Dzung C. Thach, Kate M. Blaney, Adam G. Ligler, Anthony P. Malanoski, Jose Santiago, Elizabeth A. Walter, Brian K. Agan, David Metzgar, Donald Seto, Luke T. Daum, Russell Kruzelock, Robb K. Rowley, Eric H. Hanson, Clark Tibbetts, and David A. Stenger

Broad-spectrum respiratory tract pathogen identification using resequencing DNA microarrays
Genome Res. 2006 16: 527-535. Published in Advance February 15, 2006, 10.1101/gr.4337206 [Abstract] [Full Text] [PDF] [Supplemental Research Data]  

RESOURCES:

Maria Costantini, Oliver Clay, Fabio Auletta, and Giorgio Bernardi

An isochore map of human chromosomes
Genome Res. 2006 16: 536-541. [Abstract] [Full Text] [PDF] [Supplemental Research Data] OPEN ACCESS ARTICLE  

Shailesh V. Date and Christian J. Stoeckert, Jr.

Computational modeling of the Plasmodium falciparum interactome reveals protein function on a genome-wide scale
Genome Res. 2006 16: 542-549. Published in Advance March 6, 2006, 10.1101/gr.4573206 [Abstract] [Full Text] [PDF] [Supplemental Research Data] OPEN ACCESS ARTICLE  

Sarah M. Richardson, Sarah J. Wheelan, Robert M. Yarrington, and Jef D. Boeke

GeneDesign: Rapid, automated design of multikilobase synthetic genes
Genome Res. 2006 16: 550-556. Published in Advance February 15, 2006, 10.1101/gr.4431306 [Abstract] [Full Text] [PDF] OPEN ACCESS ARTICLE  

ERRATA:

Correction for Volume 13, p. 781
Genome Res. 2006 16: 557. [Full Text] [PDF] [Supplemental Research Data]  

Correction for Volume 16, p. 182
Genome Res. 2006 16: 557. [Full Text] [PDF]  

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