ARTICLES:

Hidehiro Toh, Brian L. Weiss, Sarah A.H. Perkin, Atsushi Yamashita, Kenshiro Oshima, Masahira Hattori, and Serap Aksoy

Massive genome erosion and functional adaptations provide insights into the symbiotic lifestyle of Sodalis glossinidius in the tsetse host
Genome Res. 2006 16: 149-156. Published in Advance December 19, 2005, 10.1101/gr.4106106 [Abstract] [Full Text] [PDF] [Supplemental Research Data]  

LETTERS:

Robert A. Rollins, Fatemeh Haghighi, John R. Edwards, Rajdeep Das, Michael Q. Zhang, Jingyue Ju, and Timothy H. Bestor

Large-scale structure of genomic methylation patterns
Genome Res. 2006 16: 157-163. Published in Advance December 19, 2005, 10.1101/gr.4362006 [Abstract] [Full Text] [PDF] [Supplemental Research Data]  

Cas Simons, Michael Pheasant, Igor V. Makunin, and John S. Mattick

Transposon-free regions in mammalian genomes
Genome Res. 2006 16: 164-172. Published in Advance December 19, 2005, 10.1101/gr.4624306 [Abstract] [Full Text] [PDF] [Supplemental Research Data]  

Gary M. Wilson, Stephane Flibotte, Perseus I. Missirlis, Marco A. Marra, Steven Jones, Kevin Thornton, Andrew G. Clark, and Robert A. Holt

Identification by full-coverage array CGH of human DNA copy number increases relative to chimpanzee and gorilla
Genome Res. 2006 16: 173-181. Published in Advance December 19, 2005, 10.1101/gr.4456006 [Abstract] [Full Text] [PDF] [Supplemental Research Data]  

Zhixi Su, Jianmin Wang, Jun Yu, Xiaoqiu Huang, and Xun Gu

Evolution of alternative splicing after gene duplication
Genome Res. 2006 16: 182-189. Published in Advance December 19, 2005, 10.1101/gr.4197006 [Abstract] [Full Text] [PDF] [Supplemental Research Data]  

Han Liang and Laura F. Landweber

A genome-wide study of dual coding regions in human alternatively spliced genes
Genome Res. 2006 16: 190-196. Published in Advance December 19, 2005, 10.1101/gr.4246506 [Abstract] [Full Text] [PDF] [Supplemental Research Data]  

Qiang Sun, Guang Chen, Jeffrey W. Streb, Xiaochun Long, Yumei Yang, Christian J. Stoeckert, Jr., and Joseph M. Miano

Defining the mammalian CArGome
Genome Res. 2006 16: 197-207. Published in Advance December 19, 2005, 10.1101/gr.4108706 [Abstract] [Full Text] [PDF] [Supplemental Research Data]  

Danielle M. Greenawalt, Xiangfeng Cui, Yujun Wu, Yong Lin, Hui-Yun Wang, Minjie Luo, Irina V. Tereshchenko, Guohong Hu, James Y. Li, Yi Chu, Marco A. Azaro, Christina J. DeCoste, Nyam-Osor Chimge, Richeng Gao, Li Shen, Weichung J. Shih, Kenneth Lange, and Honghua Li

Strong correlation between meiotic crossovers and haplotype structure in a 2.5-Mb region on the long arm of chromosome 21
Genome Res. 2006 16: 208-214. Published in Advance December 29, 2005, 10.1101/gr.4641706 [Abstract] [Full Text] [PDF] [Supplemental Research Data]  

Nicolas Galtier, David Enard, Yoan Radondy, Eric Bazin, and Khalid Belkhir

Mutation hot spots in mammalian mitochondrial DNA
Genome Res. 2006 16: 215-222. Published in Advance December 14, 2005, 10.1101/gr.4305906 [Abstract] [Full Text] [PDF] [Supplemental Research Data]  

Thomas J. Urban, Ronnie Sebro, Evan H. Hurowitz, Maya K. Leabman, Ilaria Badagnani, Leah L. Lagpacan, Neil Risch, and Kathleen M. Giacomini

Functional genomics of membrane transporters in human populations
Genome Res. 2006 16: 223-230. Published in Advance December 14, 2005, 10.1101/gr.4356206 [Abstract] [Full Text] [PDF] [Supplemental Research Data]  

Marta Soldevila, Aida M. Andrés, Anna Ramírez-Soriano, Tomàs Marquès-Bonet, Francesc Calafell, Arcadi Navarro, and Jaume Bertranpetit

The prion protein gene in humans revisited: Lessons from a worldwide resequencing study
Genome Res. 2006 16: 231-239. Published in Advance December 20, 2005, 10.1101/gr.4345506 [Abstract] [Full Text] [PDF]  

Daria V. Babushok, Eric M. Ostertag, Christine E. Courtney, Janice M. Choi, and Haig H. Kazazian, Jr.

L1 integration in a transgenic mouse model
Genome Res. 2006 16: 240-250. Published in Advance December 19, 2005, 10.1101/gr.4571606 [Abstract] [Full Text] [PDF] [Supplemental Research Data]  

Jianxin Ma and Scott A. Jackson

Retrotransposon accumulation and satellite amplification mediated by segmental duplication facilitate centromere expansion in rice
Genome Res. 2006 16: 251-259. Published in Advance December 14, 2005, 10.1101/gr.4583106 [Abstract] [Full Text] [PDF]  

METHODS:

Anat Caspi and Lior Pachter

Identification of transposable elements using multiple alignments of related genomes
Genome Res. 2006 16: 260-270. Published in Advance December 14, 2005, 10.1101/gr.4361206 [Abstract] [Full Text] [PDF]  

Paul Bertone, Valery Trifonov, Joel S. Rozowsky, Falk Schubert, Olof Emanuelsson, John Karro, Ming-Yang Kao, Michael Snyder, and Mark Gerstein

Design optimization methods for genomic DNA tiling arrays
Genome Res. 2006 16: 271-281. Published in Advance December 19, 2005, 10.1101/gr.4452906 [Abstract] [Full Text] [PDF]  

Yu-Wei Cheng, Carrie Shawber, Dan Notterman, Philip Paty, and Francis Barany

Multiplexed profiling of candidate genes for CpG island methylation status using a flexible PCR/LDR/Universal Array assay
Genome Res. 2006 16: 282-289. Published in Advance December 20, 2005, 10.1101/gr.4181406 [Abstract] [Full Text] [PDF] [Supplemental Research Data]  

Efrosini Setakis, Heide Stirnadel, and David J. Balding

Logistic regression protects against population structure in genetic association studies
Genome Res. 2006 16: 290-296. Published in Advance December 14, 2005, 10.1101/gr.4346306 [Abstract] [Full Text] [PDF]  

RESOURCES:

Eiichi Shoguchi, Takeshi Kawashima, Yutaka Satou, Makoto Hamaguchi, Tadasu Sin-I, Yuji Kohara, Nik Putnam, Daniel S. Rokhsar, and Nori Satoh

Chromosomal mapping of 170 BAC clones in the ascidian Ciona intestinalis
Genome Res. 2006 16: 297-303. Published in Advance December 14, 2005, 10.1101/gr.4156606 [Abstract] [Full Text] [PDF] [Supplemental Research Data]  

ERRATA:

Correction for Volume 15, p. 1620
Genome Res. 2006 16: 304. [Full Text] [PDF]  

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