FORUM:

Pierre Boursot and Khalid Belkhir

Mouse SNPs for evolutionary biology: Beware of ascertainment biases
Genome Res. 2006 16: 1191-1192. [Full Text] [PDF]  

Bettina Harr

Regions of high differentiation—Worth a check
Genome Res. 2006 16: 1193-1194. [Abstract] [Full Text] [PDF]  

PERSPECTIVE:

Kalim U. Mir

Ultrasensitive RNA profiling: Counting single molecules on microarrays
Genome Res. 2006 16: 1195-1197. Published in Advance September 8, 2006, 10.1101/gr.5825506 [Full Text] [PDF]  

LETTERS:

Christoph Grunau, Jérome Buard, Marie-Elisabeth Brun, and Albertina De Sario

Mapping of the juxtacentromeric heterochromatin-euchromatin frontier of human chromosome 21
Genome Res. 2006 16: 1198-1207. Published in Advance September 8, 2006, 10.1101/gr.5440306 [Abstract] [Full Text] [PDF] [Supplemental Research Data]  

Ali Mortazavi, Evonne Chen Leeper Thompson, Sarah T. Garcia, Richard M. Myers, and Barbara Wold

Comparative genomics modeling of the NRSF/REST repressor network: From single conserved sites to genome-wide repertoire
Genome Res. 2006 16: 1208-1221. Published in Advance September 8, 2006, 10.1101/gr.4997306 [Abstract] [Full Text] [PDF] [Supplemental Research Data]  

Anne Helmrich, Karen Stout-Weider, Klaus Hermann, Evelin Schrock, and Thomas Heiden

Common fragile sites are conserved features of human and mouse chromosomes and relate to large active genes
Genome Res. 2006 16: 1222-1230. Published in Advance September 5, 2006, 10.1101/gr.5335506 [Abstract] [Full Text] [PDF] [Supplemental Research Data]  

Janet A. George, P. Gregory DeBaryshe, Karen L. Traverse, Susan E. Celniker, and Mary-Lou Pardue

Genomic organization of the Drosophila telomere retrotransposable elements
Genome Res. 2006 16: 1231-1240. Published in Advance September 8, 2006, 10.1101/gr.5348806 [Abstract] [Full Text] [PDF] [Supplemental Research Data]  

Rémy Bruggmann, Arvind K. Bharti, Heidrun Gundlach, Jinsheng Lai, Sarah Young, Ana C. Pontaroli, Fusheng Wei, Georg Haberer, Galina Fuks, Chunguang Du, Christina Raymond, Matt C. Estep, Renyi Liu, Jeffrey L. Bennetzen, Agnes P. Chan, Pablo D. Rabinowicz, John Quackenbush, W. Brad Barbazuk, Rod A. Wing, Bruce Birren, Chad Nusbaum, Steve Rounsley, Klaus F.X. Mayer, and Joachim Messing

Uneven chromosome contraction and expansion in the maize genome
Genome Res. 2006 16: 1241-1251. Published in Advance August 10, 2006, 10.1101/gr.5338906 [Abstract] [Full Text] [PDF] [Supplemental Research Data]  

Jennifer S. Hawkins, HyeRan Kim, John D. Nason, Rod A. Wing, and Jonathan F. Wendel

Differential lineage-specific amplification of transposable elements is responsible for genome size variation in Gossypium
Genome Res. 2006 16: 1252-1261. Published in Advance September 5, 2006, 10.1101/gr.5282906 [Abstract] [Full Text] [PDF]  

Benoit Piegu, Romain Guyot, Nathalie Picault, Anne Roulin, Abhijit Saniyal, Hyeran Kim, Kristi Collura, Darshan S. Brar, Scott Jackson, Rod A. Wing, and Olivier Panaud

Doubling genome size without polyploidization: Dynamics of retrotransposition-driven genomic expansions in Oryza australiensis, a wild relative of rice
Genome Res. 2006 16: 1262-1269. Published in Advance September 8, 2006, 10.1101/gr.5290206 [Abstract] [Full Text] [PDF] [Supplemental Research Data]  

Scott William Roy and David Penny

Large-scale intron conservation and order-of-magnitude variation in intron loss/gain rates in apicomplexan evolution
Genome Res. 2006 16: 1270-1275. Published in Advance September 8, 2006, 10.1101/gr.5410606 [Abstract] [Full Text] [PDF]  

Cheng Lu, Karthik Kulkarni, Frédéric F. Souret, Ramesh MuthuValliappan, Shivakundan Singh Tej, R. Scott Poethig, Ian R. Henderson, Steven E. Jacobsen, Wenzhong Wang, Pamela J. Green, and Blake C. Meyers

MicroRNAs and other small RNAs enriched in the Arabidopsis RNA-dependent RNA polymerase-2 mutant
Genome Res. 2006 16: 1276-1288. Published in Advance September 5, 2006, 10.1101/gr.5530106 [Abstract] [Full Text] [PDF] [HTML Page - index.htslp] OPEN ACCESS ARTICLE  

METHODS:

Eugene Berezikov, Geert van Tetering, Mark Verheul, Jose van de Belt, Linda van Laake, Joost Vos, Robert Verloop, Marc van de Wetering, Victor Guryev, Shuji Takada, Anton Jan van Zonneveld, Hiroyuki Mano, Ronald Plasterk, and Edwin Cuppen

Many novel mammalian microRNA candidates identified by extensive cloning and RAKE analysis
Genome Res. 2006 16: 1289-1298. Published in Advance September 5, 2006, 10.1101/gr.5159906 [Abstract] [Full Text] [PDF] [Supplemental Research Data]  

Josée Dostie, Todd A. Richmond, Ramy A. Arnaout, Rebecca R. Selzer, William L. Lee, Tracey A. Honan, Eric D. Rubio, Anton Krumm, Justin Lamb, Chad Nusbaum, Roland D. Green, and Job Dekker

Chromosome Conformation Capture Carbon Copy (5C): A massively parallel solution for mapping interactions between genomic elements
Genome Res. 2006 16: 1299-1309. Published in Advance September 5, 2006, 10.1101/gr.5571506 [Abstract] [Full Text] [PDF] [Supplemental Research Data]  

George A. Follows, Pawan Dhami, Berthold Göttgens, Alexander W. Bruce, Peter J. Campbell, Shane C. Dillon, Aileen M. Smith, Christoph Koch, Ian J. Donaldson, Mike A. Scott, Ian Dunham, Mary E. Janes, David Vetrie, and Anthony R. Green

Identifying gene regulatory elements by genomic microarray mapping of DNaseI hypersensitive sites
Genome Res. 2006 16: 1310-1319. Published in Advance September 8, 2006, 10.1101/gr.5373606 [Abstract] [Full Text] [PDF] [Supplemental Research Data]  

Philip L.F. Johnson and Montgomery Slatkin

Inference of population genetic parameters in metagenomics: A clean look at messy data
Genome Res. 2006 16: 1320-1327. Published in Advance September 5, 2006, 10.1101/gr.5431206 [Abstract] [Full Text] [PDF]  

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