ARTICLES:

Sara J. Cooper, Nathan D. Trinklein, Elizabeth D. Anton, Loan Nguyen, and Richard M. Myers

Comprehensive analysis of transcriptional promoter structure and function in 1% of the human genome
Genome Res. 2006 16: 1-10. Published in Advance December 12, 2005, 10.1101/gr.4222606 [Abstract] [Full Text] [PDF] [Supplemental Research Data]  

Timothy Ravasi, Harukazu Suzuki, Ken C. Pang, Shintaro Katayama, Masaaki Furuno, Rie Okunishi, Shiro Fukuda, Kelin Ru, Martin C. Frith, M. Milena Gongora, Sean M. Grimmond, David A. Hume, Yoshihide Hayashizaki, and John S. Mattick

Experimental validation of the regulated expression of large numbers of non-coding RNAs from the mouse genome
Genome Res. 2006 16: 11-19. Published in Advance December 12, 2005, 10.1101/gr.4200206 [Abstract] [Full Text] [PDF] [Supplemental Research Data]  

Wei Deng, Xiaopeng Zhu, Geir Skogerbø, Yi Zhao, Zhuo Fu, Yudong Wang, Housheng He, Lun Cai, Hong Sun, Changning Liu, Biao Li, Baoyan Bai, Jie Wang, Dong Jia, Shiwei Sun, Hang He, Yan Cui, Yu Wang, Dongbo Bu, and Runsheng Chen

Organization of the Caenorhabditis elegans small non-coding transcriptome: Genomic features, biogenesis, and expression
Genome Res. 2006 16: 20-29. Published in Advance December 12, 2005, 10.1101/gr.4139206 [Abstract] [Full Text] [PDF] [Supplemental Research Data]  

LETTERS:

Pinchas Akiva, Amir Toporik, Sarit Edelheit, Yifat Peretz, Alex Diber, Ronen Shemesh, Amit Novik, and Rotem Sorek

Transcription-mediated gene fusion in the human genome
Genome Res. 2006 16: 30-36. Published in Advance December 12, 2005, 10.1101/gr.4137606 [Abstract] [Full Text] [PDF] [Supplemental Research Data]  

Genís Parra, Alexandre Reymond, Noura Dabbouseh, Emmanouil T. Dermitzakis, Robert Castelo, Timothy M. Thomson, Stylianos E. Antonarakis, and Roderic Guigó

Tandem chimerism as a means to increase protein complexity in the human genome
Genome Res. 2006 16: 37-44. Published in Advance December 12, 2005, 10.1101/gr.4145906 [Abstract] [Full Text] [PDF] [Supplemental Research Data]  

Leonard Lipovich and Mary-Claire King

Abundant novel transcriptional units and unconventional gene pairs on human chromosome 22
Genome Res. 2006 16: 45-54. Published in Advance December 12, 2005, 10.1101/gr.3883606 [Abstract] [Full Text] [PDF] [Supplemental Research Data]  

Kouichi Kimura, Ai Wakamatsu, Yutaka Suzuki, Toshio Ota, Tetsuo Nishikawa, Riu Yamashita, Jun-ichi Yamamoto, Mitsuo Sekine, Katsuki Tsuritani, Hiroyuki Wakaguri, Shizuko Ishii, Tomoyasu Sugiyama, Kaoru Saito, Yuko Isono, Ryotaro Irie, Norihiro Kushida, Takahiro Yoneyama, Rie Otsuka, Katsuhiro Kanda, Takahide Yokoi, Hiroshi Kondo, Masako Wagatsuma, Katsuji Murakawa, Shinichi Ishida, Tadashi Ishibashi, Asako Takahashi-Fujii, Tomoo Tanase, Keiichi Nagai, Hisashi Kikuchi, Kenta Nakai, Takao Isogai, and Sumio Sugano

Diversification of transcriptional modulation: Large-scale identification and characterization of putative alternative promoters of human genes
Genome Res. 2006 16: 55-65. Published in Advance December 12, 2005, 10.1101/gr.4039406 [Abstract] [Full Text] [PDF] [Supplemental Research Data]  

Nuno L. Barbosa-Morais, Maria Carmo-Fonseca, and Samuel Aparício

Systematic genome-wide annotation of spliceosomal proteins reveals differential gene family expansion
Genome Res. 2006 16: 66-77. Published in Advance December 12, 2005, 10.1101/gr.3936206 [Abstract] [Full Text] [PDF] [Supplemental Research Data]  

Hameed Khan, Arian Smit, and Stéphane Boissinot

Molecular evolution and tempo of amplification of human LINE-1 retrotransposons since the origin of primates
Genome Res. 2006 16: 78-87. Published in Advance December 12, 2005, 10.1101/gr.4001406 [Abstract] [Full Text] [PDF] [Supplemental Research Data]  

M. Katharine Rudd, Gregory A. Wray, and Huntington F. Willard

The evolutionary dynamics of -satellite
Genome Res. 2006 16: 88-96. Published in Advance December 12, 2005, 10.1101/gr.3810906 [Abstract] [Full Text] [PDF] [Supplemental Research Data]  

Bo Thomsen, Per Horn, Frank Panitz, Emøke Bendixen, Anette H. Petersen, Lars-Erik Holm, Vivi H. Nielsen, Jørgen S. Agerholm, Jens Arnbjerg, and Christian Bendixen

A missense mutation in the bovine SLC35A3 gene, encoding a UDP-N-acetylglucosamine transporter, causes complex vertebral malformation
Genome Res. 2006 16: 97-105. Published in Advance December 12, 2005, 10.1101/gr.3690506 [Abstract] [Full Text] [PDF] OPEN ACCESS ARTICLE  

Jan Drouaud, Christine Camilleri, Pierre-Yves Bourguignon, Aurélie Canaguier, Aurélie Bérard, Daniel Vezon, Sandra Giancola, Dominique Brunel, Vincent Colot, Bernard Prum, Hadi Quesneville, and Christine Mézard

Variation in crossing-over rates across chromosome 4 of Arabidopsis thaliana reveals the presence of meiotic recombination "hot spots"
Genome Res. 2006 16: 106-114. Published in Advance December 12, 2005, 10.1101/gr.4319006 [Abstract] [Full Text] [PDF] [Supplemental Research Data]  

Lorinda K. Anderson, Ann Lai, Stephen M. Stack, Carene Rizzon, and Brandon S. Gaut

Uneven distribution of expressed sequence tag loci on maize pachytene chromosomes
Genome Res. 2006 16: 115-122. Published in Advance December 7, 2005, 10.1101/gr.4249906 [Abstract] [Full Text] [PDF] [Supplemental Research Data]  

METHODS:

Gregory E. Crawford, Ingeborg E. Holt, James Whittle, Bryn D. Webb, Denise Tai, Sean Davis, Elliott H. Margulies, YiDong Chen, John A. Bernat, David Ginsburg, Daixing Zhou, Shujun Luo, Thomas J. Vasicek, Mark J. Daly, Tyra G. Wolfsberg, and Francis S. Collins

Genome-wide mapping of DNase hypersensitive sites using massively parallel signature sequencing (MPSS)
Genome Res. 2006 16: 123-131. Published in Advance December 12, 2005, 10.1101/gr.4074106 [Abstract] [Full Text] [PDF]  

Yasuhiro Sasuga, Tomomi Tani, Masahito Hayashi, Hisashi Yamakawa, Osamu Ohara, and Yoshie Harada

Development of a microscopic platform for real-time monitoring of biomolecular interactions
Genome Res. 2006 16: 132-139. Published in Advance December 12, 2005, 10.1101/gr.4235806 [Abstract] [Full Text] [PDF] [Supplemental Research Data]  

RESOURCES:

Jetty S.S. Ammiraju, Meizhong Luo, José L. Goicoechea, Wenming Wang, Dave Kudrna, Christopher Mueller, Jayson Talag, HyeRan Kim, Nicholas B. Sisneros, Barbara Blackmon, Eric Fang, Jeffery B. Tomkins, Darshan Brar, David MacKill, Susan McCouch, Nori Kurata, Georgina Lambert, David W. Galbraith, K. Arumuganathan, Kiran Rao, Jason G. Walling, Navdeep Gill, Yeisoo Yu, Phillip SanMiguel, Carol Soderlund, Scott Jackson, and Rod A. Wing

The Oryza bacterial artificial chromosome library resource: Construction and analysis of 12 deep-coverage large-insert BAC libraries that represent the 10 genome types of the genus Oryza
Genome Res. 2006 16: 140-147. Published in Advance December 12, 2005, 10.1101/gr.3766306 [Abstract] [Full Text] [PDF] [Supplemental Research Data]  

To see an article, click its [Full Text] link. To review many abstracts, check the boxes to the left of the titles you want, and click the 'Get All Checked Abstract(s)' button. To see one abstract at a time, click its [Abstract] link.