ARTICLES:

Wei Qian, Yantao Jia, Shuang-Xi Ren, Yong-Qiang He, Jia-Xun Feng, Ling-Feng Lu, Qihong Sun, Ge Ying, Dong-Jie Tang, Hua Tang, Wei Wu, Pei Hao, Lifeng Wang, Bo-Le Jiang, Shenyan Zeng, Wen-Yi Gu, Gang Lu, Li Rong, Yingchuan Tian, Zhijian Yao, Gang Fu, Baoshan Chen, Rongxiang Fang, Boqin Qiang, Zhu Chen, Guo-Ping Zhao, Ji-Liang Tang, and Chaozu He

Comparative and functional genomic analyses of the pathogenicity of phytopathogen Xanthomonas campestris pv. campestris
Genome Res. 2005 15: 757-767. Published in Advance May 17, 2005, 10.1101/gr.3378705 [Abstract] [Full Text] [PDF] [Supplemental Research Data]  

Xiang H-F. Zhang, Christina S. Leslie, and Lawrence A. Chasin

Dichotomous splicing signals in exon flanks
Genome Res. 2005 15: 768-779. [Abstract] [Full Text] [PDF] [Supplemental Research Data]  

LETTERS:

Nora Zingler, Ute Willhoeft, Hans-Peter Brose, Volker Schoder, Thomas Jahns, Kay-Martin O. Hanschmann, Tammy A. Morrish, Johannes Löwer, and Gerald G. Schumann

Analysis of 5' junctions of human LINE-1 and Alu retrotransposons suggests an alternative model for 5'-end attachment requiring microhomology-mediated end-joining
Genome Res. 2005 15: 780-789. [Abstract] [Full Text] [PDF] [Supplemental Research Data] OPEN ACCESS ARTICLE  

Penelope R. Haddrill, Kevin R. Thornton, Brian Charlesworth, and Peter Andolfatto

Multilocus patterns of nucleotide variability and the demographic and selection history of Drosophila melanogaster populations
Genome Res. 2005 15: 790-799. [Abstract] [Full Text] [PDF] [Supplemental Research Data]  

Evgeny A. Glazov, Michael Pheasant, Elizabeth A. McGraw, Gill Bejerano, and John S. Mattick

Ultraconserved elements in insect genomes: A highly conserved intronic sequence implicated in the control of homothorax mRNA splicing
Genome Res. 2005 15: 800-808. Published in Advance May 17, 2005, 10.1101/gr.3545105 [Abstract] [Full Text] [PDF] [Supplemental Research Data]  

Morgan N. Price, Katherine H. Huang, Adam P. Arkin, and Eric J. Alm

Operon formation is driven by co-regulation and not by horizontal gene transfer
Genome Res. 2005 15: 809-819. [Abstract] [Full Text] [PDF] [Supplemental Research Data] OPEN ACCESS ARTICLE  

Irina Borodina, Preben Krabben, and Jens Nielsen

Genome-scale analysis of Streptomyces coelicolor A3(2) metabolism
Genome Res. 2005 15: 820-829. [Abstract] [Full Text] [PDF] [Supplemental Research Data]  

METHODS:

Tae Hoon Kim, Leah O. Barrera, Chunxu Qu, Sara Van Calcar, Nathan D. Trinklein, Sara J. Cooper, Rosa M. Luna, Christopher K. Glass, Michael G. Rosenfeld, Richard M. Myers, and Bing Ren

Direct isolation and identification of promoters in the human genome
Genome Res. 2005 15: 830-839. Published in Advance May 17, 2005, 10.1101/gr.3430605 [Abstract] [Full Text] [PDF] [Supplemental Research Data]  

David L. Corcoran, Eleanor Feingold, Jessica Dominick, Marietta Wright, Jo Harnaha, Massimo Trucco, Nick Giannoukakis, and Panayiotis V. Benos

Footer: A quantitative comparative genomics method for efficient recognition of cis-regulatory elements
Genome Res. 2005 15: 840-847. [Abstract] [Full Text] [PDF] [Supplemental Research Data]  

Zhou Zhu, Jay Shendure, and George M. Church

Discovering functional transcription-factor combinations in the human cell cycle
Genome Res. 2005 15: 848-855. [Abstract] [Full Text] [PDF] [Supplemental Research Data]  

Torgeir R. Hvidsten, Bartosz Wilczynski, Andriy Kryshtafovych, Jerzy Tiuryn, Jan Komorowski, and Krzysztof Fidelis

Discovering regulatory binding-site modules using rule-based learning
Genome Res. 2005 15: 856-866. [Abstract] [Full Text] [PDF] [Supplemental Research Data]  

Sophie Pasek, Anne Bergeron, Jean-Loup Risler, Alexandra Louis, Emmanuelle Ollivier, and Mathieu Raffinot

Identification of genomic features using microsyntenies of domains: Domain teams
Genome Res. 2005 15: 867-874. Published in Advance May 17, 2005, 10.1101/gr.3638405 [Abstract] [Full Text] [PDF] [Supplemental Research Data]  

Philippe P. Luedi, Alexander J. Hartemink, and Randy L. Jirtle

Genome-wide prediction of imprinted murine genes
Genome Res. 2005 15: 875-884. [Abstract] [Full Text] [PDF] [Supplemental Research Data]  

RESOURCES:

Josefa González, Michael Nefedov, Ian Bosdet, Ferran Casals, Oriol Calvete, Alejandra Delprat, Heesun Shin, Readman Chiu, Carrie Mathewson, Natasja Wye, Roger A. Hoskins, Jacqueline E. Schein, Pieter de Jong, and Alfredo Ruiz

A BAC-based physical map of the Drosophila buzzatii genome
Genome Res. 2005 15: 885-892. [Abstract] [Full Text] [PDF] [Supplemental Research Data]  

Evgenia V. Kriventseva, Anastasios C. Koutsos, Claudia Blass, Fotis C. Kafatos, George K. Christophides, and Evgeny M. Zdobnov

AnoEST: Toward A. gambiae functional genomics
Genome Res. 2005 15: 893-899. Published in Advance May 17, 2005, 10.1101/gr.3756405 [Abstract] [Full Text] [PDF] OPEN ACCESS ARTICLE  

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