ARTICLES:

Stefan Kirsch, Birgit Weiß, Tracie L. Miner, Robert H. Waterston, Royden A. Clark, Evan E. Eichler, Claudia Münch, Werner Schempp, and Gudrun Rappold

Interchromosomal segmental duplications of the pericentromeric region on the human Y chromosome
Genome Res. 2005 15: 195-204. Published in Advance January 14, 2005, 10.1101/gr.3302705 [Abstract] [Full Text] [PDF]  

Chen-Shan Chin, Jeffrey H. Chuang, and Hao Li

Genome-wide regulatory complexity in yeast promoters: Separation of functionally conserved and neutral sequence
Genome Res. 2005 15: 205-213. Published in Advance January 14, 2005, 10.1101/gr.3243305 [Abstract] [Full Text] [PDF] [Supplemental Research Data]  

LETTERS:

Richard D. Bagnall, Karen L. Ayres, Peter M. Green, and Francesco Giannelli

Gene conversion and evolution of Xq28 duplicons involved in recurring inversions causing severe hemophilia A
Genome Res. 2005 15: 214-223. [Abstract] [Full Text] [PDF] [ Supplemental Research Data]  

Yoav Gilad, Orna Man, and Gustavo Glusman

A comparison of the human and chimpanzee olfactory receptor gene repertoires
Genome Res. 2005 15: 224-230. [Abstract] [Full Text] [PDF]  

Janet M. Young, Marijo Kambere, Barbara J. Trask, and Robert P. Lane

Divergent V1R repertoires in five species: Amplification in rodents, decimation in primates, and a surprisingly small repertoire in dogs
Genome Res. 2005 15: 231-240. Published in Advance January 14, 2005, 10.1101/gr.3339905 [Abstract] [Full Text] [PDF] [Supplemental Research Data]  

Jinghui Zhang, Kent W. Hunter, Michael Gandolph, William L. Rowe, Richard P. Finney, Jenny M. Kelley, Michael Edmonson, and Kenneth H. Buetow

A high-resolution multistrain haplotype analysis of laboratory mouse genome reveals three distinctive genetic variation patterns
Genome Res. 2005 15: 241-249. [Abstract] [Full Text] [PDF] [Supplemental Research Data]  

Anita G. Fernandez, Kristin C. Gunsalus, Jerry Huang, Ling-Shiang Chuang, Nancy Ying, Hsiao-lan Liang, Caroline Tang, Aaron J. Schetter, Charles Zegar, Jean-François Rual, David E. Hill, Valerie Reinke, Marc Vidal, and Fabio Piano

New genes with roles in the C. elegans embryo revealed using RNAi of ovary-enriched ORFeome clones
Genome Res. 2005 15: 250-259. [Abstract] [Full Text] [PDF] [Supplemental Research Data]  

Tony Le Gall, Pierre Darlu, Patricia Escobar-Páramo, Bertrand Picard, and Erick Denamur

Selection-driven transcriptome polymorphism in Escherichia coli/Shigella species
Genome Res. 2005 15: 260-268. [Abstract] [Full Text] [PDF] [Supplemental Research Data]  

METHODS:

Paul Hardenbol, Fuli Yu, John Belmont, Jennifer MacKenzie, Carsten Bruckner, Tiffany Brundage, Andrew Boudreau, Steve Chow, Jim Eberle, Ayca Erbilgin, Mat Falkowski, Ron Fitzgerald, Sy Ghose, Oleg Iartchouk, Maneesh Jain, George Karlin-Neumann, Xiuhua Lu, Xin Miao, Bridget Moore, Martin Moorhead, Eugeni Namsaraev, Shiran Pasternak, Eunice Prakash, Karen Tran, Zhiyong Wang, Hywel B. Jones, Ronald W. Davis, Thomas D. Willis, and Richard A. Gibbs

Highly multiplexed molecular inversion probe genotyping: Over 10,000 targeted SNPs genotyped in a single tube assay
Genome Res. 2005 15: 269-275. [Abstract] [Full Text] [PDF]  

Hui-Yun Wang, Minjie Luo, Irina V. Tereshchenko, Danielle M. Frikker, Xiangfeng Cui, James Y. Li, Guohong Hu, Yi Chu, Marco A. Azaro, Yong Lin, Li Shen, Qifeng Yang, Manousos E. Kambouris, Richeng Gao, Weichung Shih, and Honghua Li

A genotyping system capable of simultaneously analyzing >1000 single nucleotide polymorphisms in a haploid genome
Genome Res. 2005 15: 276-283. [Abstract] [Full Text] [PDF] [Supplemental Research Data]  

James Ronald, Joshua M. Akey, Jacqueline Whittle, Erin N. Smith, Gael Yvert, and Leonid Kruglyak

Simultaneous genotyping, gene-expression measurement, and detection of allele-specific expression with oligonucleotide arrays
Genome Res. 2005 15: 284-291. [Abstract] [Full Text] [PDF] [Supplemental Research Data]  

Aleksandar Milosavljevic, Ronald A. Harris, Erica J. Sodergren, Andrew R. Jackson, Ken J. Kalafus, Anne Hodgson, Andrew Cree, Weilie Dai, Miklos Csuros, Baoli Zhu, Pieter J. de Jong, George M. Weinstock, and Richard A. Gibbs

Pooled genomic indexing of rhesus macaque
Genome Res. 2005 15: 292-301. [Abstract] [Full Text] [PDF] [Supplemental Research Data]  

Antoine M. Snijders, Norma J. Nowak, Bing Huey, Jane Fridlyand, Sindy Law, Jeffrey Conroy, Taku Tokuyasu, Kubilay Demir, Readman Chiu, Jian-Hua Mao, Ajay N. Jain, Steven J.M. Jones, Allan Balmain, Daniel Pinkel, and Donna G. Albertson

Mapping segmental and sequence variations among laboratory mice using BAC array CGH
Genome Res. 2005 15: 302-311. [Abstract] [Full Text] [PDF] [Supplemental Research Data]  

Kai Tan, Lee Ann McCue, and Gary D. Stormo

Making connections between novel transcription factors and their DNA motifs
Genome Res. 2005 15: 312-320. Published in Advance January 14, 2005, 10.1101/gr.3069205 [Abstract] [Full Text] [PDF] [Supplemental Research Data]  

Shawn Lewenza, Jennifer L. Gardy, Fiona S.L. Brinkman, and Robert E.W. Hancock

Genome-wide identification of Pseudomonas aeruginosa exported proteins using a consensus computational strategy combined with a laboratory-based PhoA fusion screen
Genome Res. 2005 15: 321-329. [Abstract] [Full Text] [PDF] [Supplemental Research Data]  

RESOURCES:

Chuong B. Do, Mahathi S.P. Mahabhashyam, Michael Brudno, and Serafim Batzoglou

ProbCons: Probabilistic consistency-based multiple sequence alignment
Genome Res. 2005 15: 330-340. [Abstract] [Full Text] [PDF] [Supplemental Research Data]  

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