LETTERS:

David Serre and Svante Pääbo

Evidence for Gradients of Human Genetic Diversity Within and Among Continents
Genome Res. 2004 14: 1679-1685. [Abstract] [Full Text] [Supplemental Research Data]  

Thomas J. Templeton, Lakshminarayan M. Iyer, Vivek Anantharaman, Shinichiro Enomoto, Juan E. Abrahante, G.M. Subramanian, Stephen L. Hoffman, Mitchell S. Abrahamsen, and L. Aravind

Comparative Analysis of Apicomplexa and Genomic Diversity in Eukaryotes
Genome Res. 2004 14: 1686-1695. [Abstract] [Full Text] [Supplemental Research Data]  

Mario Ventura, Stefania Weigl, Lucia Carbone, Maria Francesca Cardone, Doriana Misceo, Mariagrazia Teti, Pietro D'Addabbo, Annelise Wandall, Erik Björck, Pieter J. de Jong, Xinwei She, Evan E. Eichler, Nicoletta Archidiacono, and Mariano Rocchi

Recurrent Sites for New Centromere Seeding
Genome Res. 2004 14: 1696-1703. [Abstract] [Full Text] [Supplemental Research Data]  

Solomon G. Nergadze, Mariano Rocchi, Claus M. Azzalin, Chiara Mondello, and Elena Giulotto

Insertion of Telomeric Repeats at Intrachromosomal Break Sites During Primate Evolution
Genome Res. 2004 14: 1704-1710. Published in Advance August 12, 2004, 10.1101/gr.2778904 [Abstract] [Full Text] [Supplemental Research Data]  

Yutaka Suzuki, Riu Yamashita, Matsuyuki Shirota, Yuta Sakakibara, Joe Chiba, Junko Mizushima-Sugano, Kenta Nakai, and Sumio Sugano

Sequence Comparison of Human and Mouse Genes Reveals a Homologous Block Structure in the Promoter Regions
Genome Res. 2004 14: 1711-1718. [Abstract] [Full Text] [Supplemental Research Data]  

Dennis D.Y. Kim, Thomas T.Y. Kim, Thomas Walsh, Yoshifumi Kobayashi, Tara C. Matise, Steven Buyske, and Abram Gabriel

Widespread RNA Editing of Embedded Alu Elements in the Human Transcriptome
Genome Res. 2004 14: 1719-1725. [Abstract] [Full Text] [Supplemental Research Data]  

Jennifer R. Weidman, Susan K. Murphy, Catherine M. Nolan, Fred S. Dietrich, and Randy L. Jirtle

Phylogenetic Footprint Analysis of IGF2 in Extant Mammals
Genome Res. 2004 14: 1726-1732. [Abstract] [Full Text]  

Naka Hattori, Tetsuya Abe, Naoko Hattori, Masako Suzuki, Tomoki Matsuyama, Shigeo Yoshida, En Li, and Kunio Shiota

Preference of DNA Methyltransferases for CpG Islands in Mouse Embryonic Stem Cells
Genome Res. 2004 14: 1733-1740. Published in Advance August 12, 2004, 10.1101/gr.2431504 [Abstract] [Full Text]  

Hervé Seitz, Hélène Royo, Marie-Line Bortolin, Shau-Ping Lin, Anne C. Ferguson-Smith, and Jérôme Cavaillé

A Large Imprinted microRNA Gene Cluster at the Mouse Dlk1-Gtl2 Domain
Genome Res. 2004 14: 1741-1748. Published in Advance August 12, 2004, 10.1101/gr.2743304 [Abstract] [Full Text] [Supplemental Research Data]  

METHODS:

Ming Xiao, Angie Phong, Kristen L. Lum, Richard A. Greene, Philip R. Buzby, and Pui-Yan Kwok

Role of Excess Inorganic Pyrophosphate in Primer-Extension Genotyping Assays
Genome Res. 2004 14: 1749-1755. Published in Advance August 12, 2004, 10.1101/gr.2833204 [Abstract] [Full Text]  

Biju Issac and Gajendra Pal Singh Raghava

EGPred: Prediction of Eukaryotic Genes Using Ab Initio Methods After Combining With Sequence Similarity Approaches
Genome Res. 2004 14: 1756-1766. [Abstract] [Full Text] [Supplemental Research Data]  

Xiaosong Wang, Ron Korstanje, David Higgins, and Beverly Paigen

Haplotype Analysis in Multiple Crosses to Identify a QTL Gene
Genome Res. 2004 14: 1767-1772. Published in Advance August 12, 2004, 10.1101/gr.2668204 [Abstract] [Full Text] [Supplemental Research Data]  

Andreas Kremling, Sophia Fischer, Kapil Gadkar, Francis J. Doyle, Thomas Sauter, Eric Bullinger, Frank Allgöwer, and Ernst D. Gilles

A Benchmark for Methods in Reverse Engineering and Model Discrimination: Problem Formulation and Solutions
Genome Res. 2004 14: 1773-1785. [Abstract] [Full Text]  

Paul A. Pevzner, Haixu Tang, and Glenn Tesler

De Novo Repeat Classification and Fragment Assembly
Genome Res. 2004 14: 1786-1796. [Abstract] [Full Text] [Correction]  

Jennifer L. Reed and Bernhard Ø. Palsson

Genome-Scale In Silico Models of E. coli Have Multiple Equivalent Phenotypic States: Assessment of Correlated Reaction Subsets That Comprise Network States
Genome Res. 2004 14: 1797-1805. [Abstract] [Full Text] [Supplemental Research Data]  

RESOURCES:

Petko M. Petkov, Yueming Ding, Megan A. Cassell, Weidong Zhang, Gunjan Wagner, Evelyn E. Sargent, Steven Asquith, Victor Crew, Kevin A. Johnson, Phil Robinson, Valerie E. Scott, and Michael V. Wiles

An Efficient SNP System for Mouse Genome Scanning and Elucidating Strain Relationships
Genome Res. 2004 14: 1806-1811. [Abstract] [Full Text] [Supplemental Research Data]  

F. Alex Feltus, Jun Wan, Stefan R. Schulze, James C. Estill, Ning Jiang, and Andrew H. Paterson

An SNP Resource for Rice Genetics and Breeding Based on Subspecies Indica and Japonica Genome Alignments
Genome Res. 2004 14: 1812-1819. [Abstract] [Full Text] [Supplemental Research Data]  

RETRACTION:

Genome Res. 2004 14: 1820. [Full Text]  

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