ARTICLES:

Jacob D. Jaffe, Nicole Stange-Thomann, Cherylyn Smith, David DeCaprio, Sheila Fisher, Jonathan Butler, Sarah Calvo, Tim Elkins, Michael G. FitzGerald, Nabil Hafez, Chinnappa D. Kodira, John Major, Shunguang Wang, Jane Wilkinson, Robert Nicol, Chad Nusbaum, Bruce Birren, Howard C. Berg, and George M. Church

The Complete Genome and Proteome of Mycoplasma mobile
Genome Res. 2004 14: 1447-1461. [Abstract] [Full Text] [Supplemental Research Data]  

Philipp Khaitovich, Bjoern Muetzel, Xinwei She, Michael Lachmann, Ines Hellmann, Janko Dietzsch, Stephan Steigele, Hong-Hai Do, Gunter Weiss, Wolfgang Enard, Florian Heissig, Thomas Arendt, Kay Nieselt-Struwe, Evan E. Eichler, and Svante Pääbo

Regional Patterns of Gene Expression in Human and Chimpanzee Brains
Genome Res. 2004 14: 1462-1473. [Abstract] [Full Text] [Supplemental Research Data]  

LETTERS:

Corrinne E. Grover, HyeRan Kim, Rod A. Wing, Andrew H. Paterson, and Jonathan F. Wendel

Incongruent Patterns of Local and Global Genome Size Evolution in Cotton
Genome Res. 2004 14: 1474-1482. Published in Advance July 15, 2004, 10.1101/gr.2673204 [Abstract] [Full Text]  

Daniel C. Chen, Janna Saarela, Royden A. Clark, Timo Miettinen, Anthony Chi, Evan E. Eichler, Leena Peltonen, and Aarno Palotie

Segmental Duplications Flank the Multiple Sclerosis Locus on Chromosome 17q
Genome Res. 2004 14: 1483-1492. Published in Advance July 15, 2004, 10.1101/gr.2340804 [Abstract] [Full Text]  

Kelly A. Frazer, Claire M. Wade, David A. Hinds, Nila Patil, David R. Cox, and Mark J. Daly

Segmental Phylogenetic Relationships of Inbred Mouse Strains Revealed by Fine-Scale Analysis of Sequence Variation Across 4.6 Mb of Mouse Genome
Genome Res. 2004 14: 1493-1500. [Abstract] [Full Text]  

Riza Daza-Vamenta, Gustavo Glusman, Lee Rowen, Brandon Guthrie, and Daniel E. Geraghty

Genetic Divergence of the Rhesus Macaque Major Histocompatibility Complex
Genome Res. 2004 14: 1501-1515. [Abstract] [Full Text] [Supplemental Reseach Data]  

Richard D. Emes, Matthew C. Riley, Christina M. Laukaitis, Leo Goodstadt, Robert C. Karn, and Chris P. Ponting

Comparative Evolutionary Genomics of Androgen-Binding Protein Genes
Genome Res. 2004 14: 1516-1529. Published in Advance July 15, 2004, 10.1101/gr.2540304 [Abstract] [Full Text] [Supplemental Research Data]  

Cristian I. Castillo-Davis, Daniel L. Hartl, and Guillaume Achaz

cis-Regulatory and Protein Evolution in Orthologous and Duplicate Genes
Genome Res. 2004 14: 1530-1536. Published in Advance July 15, 2004, 10.1101/gr.2662504 [Abstract] [Full Text] [Supplemental Research Data]  

Aaron A. Best, Hilary G. Morrison, Andrew G. McArthur, Mitchell L. Sogin, and Gary J. Olsen

Evolution of Eukaryotic Transcription: Insights From the Genome of Giardia lamblia
Genome Res. 2004 14: 1537-1547. [Abstract] [Full Text] [Supplemental Research Data]  

Richard M.R. Coulson, Neil Hall, and Christos A. Ouzounis

Comparative Genomics of Transcriptional Control in the Human Malaria Parasite Plasmodium falciparum
Genome Res. 2004 14: 1548-1554. Published in Advance July 15, 2004, 10.1101/gr.2218604 [Abstract] [Full Text]  

Atsushi Ogura, Kazuho Ikeo, and Takashi Gojobori

Comparative Analysis of Gene Expression for Convergent Evolution of Camera Eye Between Octopus and Human
Genome Res. 2004 14: 1555-1561. [Abstract] [Full Text] [Supplemental Reseach Data]  

Peter C. FitzGerald, Andrey Shlyakhtenko, Alain A. Mir, and Charles Vinson

Clustering of DNA Sequences in Human Promoters
Genome Res. 2004 14: 1562-1574. Published in Advance July 15, 2004, 10.1101/gr.1953904 [Abstract] [Full Text]  

Huiquan Wang, Michiel Noordewier, and Craig J. Benham

Stress-Induced DNA Duplex Destabilization (SIDD) in the E. coli Genome: SIDD Sites Are Closely Associated With Promoters
Genome Res. 2004 14: 1575-1584. [Abstract] [Full Text]  

Chiara M. Mazzanti, Anita Tandle, Dominique Lorang, Nick Costouros, David Roberts, Generoso Bevilacqua, and Steven K. Libutti

Early Genetic Mechanisms Underlying the Inhibitory Effects of Endostatin and Fumagillin on Human Endothelial Cells
Genome Res. 2004 14: 1585-1593. [Abstract] [Full Text]  

Rituparna Mukhopadhyay, WenQiang Yu, Joanne Whitehead, JunWang Xu, Magda Lezcano, Svetlana Pack, Chandrasekhar Kanduri, Meena Kanduri, Vasudeva Ginjala, Alexander Vostrov, Wolfgang Quitschke, Igor Chernukhin, Elena Klenova, Victor Lobanenkov, and Rolf Ohlsson

The Binding Sites for the Chromatin Insulator Protein CTCF Map to DNA Methylation-Free Domains Genome-Wide
Genome Res. 2004 14: 1594-1602. Published in Advance July 15, 2004, 10.1101/gr.2408304 [Abstract] [Full Text] [Supplemental Research Data]  

METHODS:

Vincent Magrini, Wesley C. Warren, John Wallis, William E. Goldman, Jian Xu, Elaine R. Mardis, and John D. McPherson

Fosmid-Based Physical Mapping of the Histoplasma capsulatum Genome
Genome Res. 2004 14: 1603-1609. [Abstract] [Full Text]  

Aleksey Y. Ogurtsov, Shamil Sunyaev, and Alexey S. Kondrashov

Indel-Based Evolutionary Distance and Mouse–Human Divergence
Genome Res. 2004 14: 1610-1616. [Abstract] [Full Text]  

Rotem Sorek, Ronen Shemesh, Yuval Cohen, Ortal Basechess, Gil Ast, and Ron Shamir

A Non-EST-Based Method for Exon-Skipping Prediction
Genome Res. 2004 14: 1617-1623. [Abstract] [Full Text] [Supplemental Research Data]  

Shin Lin, Aravinda Chakravarti, and David J. Cutler

Haplotype and Missing Data Inference in Nuclear Families
Genome Res. 2004 14: 1624-1632. Published in Advance July 15, 2004, 10.1101/gr.2204604 [Abstract] [Full Text]  

Bjarni V. Halldórsson, Vineet Bafna, Ross Lippert, Russell Schwartz, Francisco M. De La Vega, Andrew G. Clark, and Sorin Istrail

Optimal Haplotype Block-Free Selection of Tagging SNPs for Genome-Wide Association Studies
Genome Res. 2004 14: 1633-1640. [Abstract] [Full Text] [Supplemental Research Data]  

Blake C. Meyers, Shivakundan Singh Tej, Tam H. Vu, Christian D. Haudenschild, Vikas Agrawal, Steve B. Edberg, Hassan Ghazal, and Shannon Decola

The Use of MPSS for Whole-Genome Transcriptional Analysis in Arabidopsis
Genome Res. 2004 14: 1641-1653. [Abstract] [Full Text] [Supplemental Reseach Data]  

William A. Schmitt, Jr., R. Michael Raab, and Gregory Stephanopoulos

Elucidation of Gene Interaction Networks Through Time-Lagged Correlation Analysis of Transcriptional Data
Genome Res. 2004 14: 1654-1663. [Abstract] [Full Text]  

RESOURCES:

Matthew R. Nelson, George Marnellos, Stefan Kammerer, Carolyn R. Hoyal, Michael M. Shi, Charles R. Cantor, and Andreas Braun

Large-Scale Validation of Single Nucleotide Polymorphisms in Gene Regions
Genome Res. 2004 14: 1664-1668. [Abstract] [Full Text] [Supplemental Research Data]  

Janet E. Hill, Susanne L. Penny, Kenneth G. Crowell, Swee Han Goh, and Sean M. Hemmingsen

cpnDB: A Chaperonin Sequence Database
Genome Res. 2004 14: 1669-1675. [Abstract] [Full Text]  

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