INSIGHT/OUTLOOK:

Kenneth F. Manly, Dan Nettleton, and J.T. Gene Hwang

Genomics, Prior Probability, and Statistical Tests of Multiple Hypotheses
Genome Res. 2004 14: 997-1001. [Full Text]  

ARTICLES:

Martin J. Lercher, Jean-Vincent Chamary, and Laurence D. Hurst

Genomic Regionality in Rates of Evolution Is Not Explained by Clustering of Genes of Comparable Expression Profile
Genome Res. 2004 14: 1002-1013. [Abstract] [Full Text] [Supplemental Research Data]  

Bill Wickstead, Klaus Ersfeld, and Keith Gull

The Small Chromosomes of Trypanosoma brucei Involved in Antigenic Variation Are Constructed Around Repetitive Palindromes
Genome Res. 2004 14: 1014-1024. [Abstract] [Full Text] [Supplemental Research Data]  

LETTERS:

Nitin S. Baliga, Sarah J. Bjork, Richard Bonneau, Min Pan, Chika Iloanusi, Molly C.H. Kottemann, Leroy Hood, and Jocelyne DiRuggiero

Systems Level Insights Into the Stress Response to UV Radiation in the Halophilic Archaeon Halobacterium NRC-1
Genome Res. 2004 14: 1025-1035. Published in Advance May 12, 2004, 10.1101/gr.1993504 [Abstract] [Full Text] [Supplemental Research Data]  

Vincent Daubin and Howard Ochman

Bacterial Genomes as New Gene Homes: The Genealogy of ORFans in E. coli
Genome Res. 2004 14: 1036-1042. [Abstract] [Full Text] [Supplemental Research Data]  

Laura C. Edwards-Ingram, Manda E. Gent, David C. Hoyle, Andrew Hayes, Lubomira I. Stateva, and Stephen G. Oliver

Comparative Genomic Hybridization Provides New Insights Into the Molecular Taxonomy of the Saccharomyces Sensu Stricto Complex
Genome Res. 2004 14: 1043-1051. [Abstract] [Full Text] [Supplemental Research Data -1][upplemental Research Data -2][Supplemental Research Data -3]  

Tobili Y. Sam-Yellowe, Laurence Florens, Jeffrey R. Johnson, Tongmin Wang, Judith A. Drazba, Karine G. Le Roch, Yingyao Zhou, Serge Batalov, Daniel J. Carucci, Elizabeth A. Winzeler, and John R. Yates, III

A Plasmodium Gene Family Encoding Maurer's Cleft Membrane Proteins: Structural Properties and Expression Profiling
Genome Res. 2004 14: 1052-1059. Published in Advance May 12, 2004, 10.1101/gr.2126104 [Abstract] [Full Text] [Supplemental Research Data]  

Elizabeth J.B. Williams and Dianna J. Bowles

Coexpression of Neighboring Genes in the Genome of Arabidopsis thaliana
Genome Res. 2004 14: 1060-1067. [Abstract] [Full Text] [Supplemental Research Data]  

Dale J. Hedges, Pauline A. Callinan, Richard Cordaux, Jinchuan Xing, Erin Barnes, and Mark A. Batzer

Differential Alu Mobilization and Polymorphism Among the Human and Chimpanzee Lineages
Genome Res. 2004 14: 1068-1075. [Abstract] [Full Text]  

Michael F. Seldin, Takanobu Morii, Heather E. Collins-Schramm, Bill Chima, Rick Kittles, Lindsey A. Criswell, and Hongzhe Li

Putative Ancestral Origins of Chromosomal Segments in Individual African Americans: Implications for Admixture Mapping
Genome Res. 2004 14: 1076-1084. Published in Advance May 12, 2004, 10.1101/gr.2165904 [Abstract] [Full Text]  

Homin K. Lee, Amy K. Hsu, Jon Sajdak, Jie Qin, and Paul Pavlidis

Coexpression Analysis of Human Genes Across Many Microarray Data Sets
Genome Res. 2004 14: 1085-1094. [Abstract] [Full Text] [Supplemental Research Data]  

METHODS:

Cedric Simillion, Klaas Vandepoele, Yvan Saeys, and Yves Van de Peer

Building Genomic Profiles for Uncovering Segmental Homology in the Twilight Zone
Genome Res. 2004 14: 1095-1106. [Abstract] [Full Text]  

Haiyuan Yu, Nicholas M. Luscombe, Hao Xin Lu, Xiaowei Zhu, Yu Xia, Jing-Dong J. Han, Nicolas Bertin, Sambath Chung, Marc Vidal, and Mark Gerstein

Annotation Transfer Between Genomes: Protein–Protein Interologs and Protein–DNA Regulogs
Genome Res. 2004 14: 1107-1118. [Abstract] [Full Text] [Supplemental Research Data]  

Robert W. Siegel, Nileena Velappan, Peter Pavlik, Leslie Chasteen, and Andrew Bradbury

Recombinatorial Cloning Using Heterologous Lox Sites
Genome Res. 2004 14: 1119-1129. [Abstract] [Full Text]  

Christian Conrad, Holger Erfle, Patrick Warnat, Nathalie Daigle, Thomas Lörch, Jan Ellenberg, Rainer Pepperkok, and Roland Eils

Automatic Identification of Subcellular Phenotypes on Human Cell Arrays
Genome Res. 2004 14: 1130-1136. [Abstract] [Full Text] [Supplemental Research Data]  

Eugene Y. Chan, Nuno M. Goncalves, Rebecca A. Haeusler, Amie J. Hatch, Jonathan W. Larson, Anthony M. Maletta, Gregory R. Yantz, Eugene D. Carstea, Martin Fuchs, Gordon G. Wong, Steven R. Gullans, and Rudolf Gilmanshin

DNA Mapping Using Microfluidic Stretching and Single-Molecule Detection of Fluorescent Site-Specific Tags
Genome Res. 2004 14: 1137-1146. [Abstract] [Full Text] [Supplemental Research Data]  

Bastien Chevreux, Thomas Pfisterer, Bernd Drescher, Albert J. Driesel, Werner E.G. Müller, Thomas Wetter, and Sándor Suhai

Using the miraEST Assembler for Reliable and Automated mRNA Transcript Assembly and SNP Detection in Sequenced ESTs
Genome Res. 2004 14: 1147-1159. Published in Advance May 12, 2004, 10.1101/gr.1917404 [Abstract] [Full Text]  

Vamsi Veeramachaneni and Wojciech Makalowski

Visualizing Sequence Similarity of Protein Families
Genome Res. 2004 14: 1160-1169. Published in Advance May 12, 2004, 10.1101/gr.2079204 [Abstract] [Full Text]  

Saurabh Asthana, Oliver D. King, Francis D. Gibbons, and Frederick P. Roth

Predicting Protein Complex Membership Using Probabilistic Network Reliability
Genome Res. 2004 14: 1170-1175. Published in Advance May 12, 2004, 10.1101/gr.2203804 [Abstract] [Full Text] [Supplemental Research Data]  

RESOURCES:

C. Andrew Stewart, Roger Horton, Richard J.N. Allcock, Jennifer L. Ashurst, Alexey M. Atrazhev, Penny Coggill, Ian Dunham, Simon Forbes, Karen Halls, Joanna M.M. Howson, Sean J. Humphray, Sarah Hunt, Andrew J. Mungall, Kazutoyo Osoegawa, Sophie Palmer, Anne N. Roberts, Jane Rogers, Sarah Sims, Yu Wang, Laurens G. Wilming, John F. Elliott, Pieter J. de Jong, Stephen Sawcer, John A. Todd, John Trowsdale, and Stephan Beck

Complete MHC Haplotype Sequencing for Common Disease Gene Mapping
Genome Res. 2004 14: 1176-1187. Published in Advance May 12, 2004, 10.1101/gr.2188104 [Abstract] [Full Text] [Supplemental Research Data]  

Gavin E. Crooks, Gary Hon, John-Marc Chandonia, and Steven E. Brenner

WebLogo: A Sequence Logo Generator
Genome Res. 2004 14: 1188-1190. [Abstract] [Full Text]  

Ivan Ovcharenko, Dario Boffelli, and Gabriela G. Loots

eShadow: A Tool for Comparing Closely Related Sequences
Genome Res. 2004 14: 1191-1198. [Abstract] [Full Text] [Supplemental Research Data]  

Caroline M. Nievergelt, Douglas W. Smith, J. Bradley Kohlenberg, and Nicholas J. Schork

Large-Scale Integration of Human Genetic and Physical Maps
Genome Res. 2004 14: 1199-1205. Published in Advance May 12, 2004, 10.1101/gr.1475304 [Abstract] [Full Text] [Supplemental Research Data]  

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