ARTICLES:

Martha L. Bulyk, Abigail M. McGuire, Nobuhisa Masuda, and George M. Church

A Motif Co-Occurrence Approach for Genome-Wide Prediction of Transcription-Factor-Binding Sites in Escherichia coli
Genome Res. 2004 14: 201-208. [Abstract] [Full Text] [Supplemental Research Data]  

Makedonka Mitreva, James P. McCarter, John Martin, Mike Dante, Todd Wylie, Brandi Chiapelli, Deana Pape, Sandra W. Clifton, Thomas B. Nutman, and Robert H. Waterston

Comparative Genomics of Gene Expression in the Parasitic and Free-Living Nematodes Strongyloides stercoralis and Caenorhabditis elegans
Genome Res. 2004 14: 209-220. [Abstract] [Full Text] [Supplemental Research Data]  

LETTERS:

Joakim Westberg, Anja Persson, Anders Holmberg, Alexander Goesmann, Joakim Lundeberg, Karl-Erik Johansson, Bertil Pettersson, and Mathias Uhlén

The Genome Sequence of Mycoplasma mycoides subsp. mycoides SC Type Strain PG1^T, the Causative Agent of Contagious Bovine Pleuropneumonia (CBPP)
Genome Res. 2004 14: 221-227. [Abstract] [Full Text] [Supplemental Research Data]  

Thomas Dickmeis, Charles Plessy, Sepand Rastegar, Pia Aanstad, Ralf Herwig, Frédéric Chalmel, Nadine Fischer, and Uwe Strähle

Expression Profiling and Comparative Genomics Identify a Conserved Regulatory Region Controlling Midline Expression in the Zebrafish Embryo
Genome Res. 2004 14: 228-238. Published in Advance January 12, 2004, 10.1101/gr.1819204 [Abstract] [Full Text] [Supplemental Research Data]  

Sun-Hee Leem, Natalay Kouprina, Jane Grimwood, Jung-Hyun Kim, Michael Mullokandov, Young-Ho Yoon, Ji-Youn Chae, Jenna Morgan, Susan Lucas, Paul Richardson, Chris Detter, Tijana Glavina, Eddy Rubin, J. Carl Barrett, and Vladimir Larionov

Closing the Gaps on Human Chromosome 19 Revealed Genes With a High Density of Repetitive Tandemly Arrayed Elements
Genome Res. 2004 14: 239-246. Published in Advance January 12, 2004, 10.1101/gr.1929904 [Abstract] [Full Text] [Supplemental Research Data]  

Yoichi Yamada, Hidemi Watanabe, Fumihito Miura, Hidenobu Soejima, Michiko Uchiyama, Tsuyoshi Iwasaka, Tsunehiro Mukai, Yoshiyuki Sakaki, and Takashi Ito

A Comprehensive Analysis of Allelic Methylation Status of CpG Islands on Human Chromosome 21q
Genome Res. 2004 14: 247-266. [Abstract] [Full Text] [Supplemental Research Data]  

Sara A. Sandstedt and Priscilla K. Tucker

Evolutionary Strata on the Mouse X Chromosome Correspond to Strata on the Human X Chromosome
Genome Res. 2004 14: 267-272. [Abstract] [Full Text] [Supplemental Research Data]  

Daniel L. Halligan, Adam Eyre-Walker, Peter Andolfatto, and Peter D. Keightley

Patterns of Evolutionary Constraints in Intronic and Intergenic DNA of Drosophila
Genome Res. 2004 14: 273-279. [Abstract] [Full Text] [Supplemental Research Data]  

Vamsi Veeramachaneni, Wojciech Makalowski, Michal Galdzicki, Raman Sood, and Izabela Makalowska

Mammalian Overlapping Genes: The Comparative Perspective
Genome Res. 2004 14: 280-286. [Abstract] [Full Text]  

METHODS:

Graham R. Bignell, Jing Huang, Joel Greshock, Stephen Watt, Adam Butler, Sofie West, Mira Grigorova, Keith W. Jones, Wen Wei, Michael R. Stratton, P. Andrew Futreal, Barbara Weber, Michael H. Shapero, and Richard Wooster

High-Resolution Analysis of DNA Copy Number Using Oligonucleotide Microarrays
Genome Res. 2004 14: 287-295. [Abstract] [Full Text]  

Hameer Ruparel, Michael E. Ulz, Sobin Kim, and Jingyue Ju

Digital Detection of Genetic Mutations Using SPC-Sequencing
Genome Res. 2004 14: 296-300. [Abstract] [Full Text]  

Anthony P. Burgard, Evgeni V. Nikolaev, Christophe H. Schilling, and Costas D. Maranas

Flux Coupling Analysis of Genome-Scale Metabolic Network Reconstructions
Genome Res. 2004 14: 301-312. Published in Advance January 12, 2004, 10.1101/gr.1926504 [Abstract] [Full Text] [Supplemental Research Data]  

RESOURCES:

Michael A. Chapman, Ian J. Donaldson, James Gilbert, Darren Grafham, Jane Rogers, Anthony R. Green, and Berthold Göttgens

Analysis of Multiple Genomic Sequence Alignments: A Web Resource, Online Tools, and Lessons Learned From Analysis of Mammalian SCL Loci
Genome Res. 2004 14: 313-318. Published in Advance January 12, 2004, 10.1101/gr.1759004 [Abstract] [Full Text] [Supplemental Research Data]  

Chengcang Wu, Shuku Sun, Padmavathi Nimmakayala, Felipe A. Santos, Khalid Meksem, Rachael Springman, Kejiao Ding, David A. Lightfoot, and Hong-Bin Zhang

A BAC- and BIBAC-Based Physical Map of the Soybean Genome
Genome Res. 2004 14: 319-326. Published in Advance January 12, 2004, 10.1101/gr.1405004 [Abstract] [Full Text] [Supplemental Research Data]  

ERRATA:

Correction for Volume 13, p. 2717
Genome Res. 2004 14: 327. [Full Text]  

Correction for Volume 13, p. 1787
Genome Res. 2004 14: 327. [Full Text]  

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