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Volume 14, Issue 12: December 2004 [Index by Author] 

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  ARTICLES
  LETTERS
  METHODS
  RESOURCES
  ERRATA
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ARTICLES:

Matthew Blow, P. Andrew Futreal, Richard Wooster, and Michael R. Stratton
A survey of RNA editing in human brain
Genome Res. 2004 14: 2379-2387. Published in Advance November 15, 2004, 10.1101/gr.2951204 [Abstract] [Full Text] [Supplemental Research Data]  

Nathan B. Sutter, Michael A. Eberle, Heidi G. Parker, Barbara J. Pullar, Ewen F. Kirkness, Leonid Kruglyak, and Elaine A. Ostrander
Extensive and breed-specific linkage disequilibrium in Canis familiaris
Genome Res. 2004 14: 2388-2396. Published in Advance November 15, 2004, 10.1101/gr.3147604 [Abstract] [Full Text] [Supplemental Research Data]  

James P. Noonan, Jane Grimwood, Joshua Danke, Jeremy Schmutz, Mark Dickson, Chris T. Amemiya, and Richard M. Myers
Coelacanth genome sequence reveals the evolutionary history of vertebrate genes
Genome Res. 2004 14: 2397-2405. Published in Advance November 15, 2004, 10.1101/gr.2972804 [Abstract] [Full Text] [Supplemental Research Data]  

LETTERS:

Dario Boffelli, Claire V. Weer, Li Weng, Keith D. Lewis, Malak I. Shoukry, Lior Pachter, David N. Keys, and Edward M. Rubin
Intraspecies sequence comparisons for annotating genomes
Genome Res. 2004 14: 2406-2411. Published in Advance November 15, 2004, 10.1101/gr.3199704 [Abstract] [Full Text] [Supplemental Research Data]  

Mathieu Blanchette, Eric D. Green, Webb Miller, and David Haussler
Reconstructing large regions of an ancestral mammalian genome in silico
Genome Res. 2004 14: 2412-2423. [Abstract] [Full Text] [Supplemental Research Data]  

Sujit Dike, Vivekanand S. Balija, Lidia U. Nascimento, Zhenyu Xuan, Jacqueline Ou, Theresa Zutavern, Lance E. Palmer, Greg Hannon, Michael Q. Zhang, and W. Richard McCombie
The mouse genome: Experimental examination of gene predictions and transcriptional start sites
Genome Res. 2004 14: 2424-2429. [Abstract] [Full Text] [ Supplemental Research Data]  

Natalia Martin, Satyakam Patel, and Julia A. Segre
Long-range comparison of human and mouse Sprr loci to identify conserved noncoding sequences involved in coordinate regulation
Genome Res. 2004 14: 2430-2438. [Abstract] [Full Text] [Supplemental Research Data]  

Kuniya Abe, Hideki Noguchi, Keiko Tagawa, Misako Yuzuriha, Atsushi Toyoda, Toshio Kojima, Kiyoshi Ezawa, Naruya Saitou, Masahira Hattori, Yoshiyuki Sakaki, Kazuo Moriwaki, and Toshihiko Shiroishi
Contribution of Asian mouse subspecies Mus musculus molossinus to genomic constitution of strain C57BL/6J, as defined by BAC-end sequence–SNP analysis
Genome Res. 2004 14: 2439-2447. [Abstract] [Full Text] [ Supplemental Research Data]  

David S. Johnson, Brad Davidson, Christopher D. Brown, William C. Smith, and Arend Sidow
Noncoding regulatory sequences of Ciona exhibit strong correspondence between evolutionary constraint and functional importance
Genome Res. 2004 14: 2448-2456. Published in Advance November 15, 2004, 10.1101/gr.2964504 [Abstract] [Full Text] [Supplemental Research Data]  

Debraj GuhaThakurta, Lawrence A. Schriefer, Robert H. Waterston, and Gary D. Stormo
Novel transcription regulatory elements in Caenorhabditis elegans muscle genes
Genome Res. 2004 14: 2457-2468. [Abstract] [Full Text]  

Robert L. Charlebois and W. Ford Doolittle
Computing prokaryotic gene ubiquity: Rescuing the core from extinction
Genome Res. 2004 14: 2469-2477. [Abstract] [Full Text]  

METHODS:

Yasushi Shigemori, Hirotaka Haruta, Takao Okada, and Michio Oishi
Marking of specific sequences in double-stranded DNA molecules—SNP detection and direct observation
Genome Res. 2004 14: 2478-2485. [Abstract] [Full Text] [Supplmental Research Data]  

Omer Barad, Eti Meiri, Amir Avniel, Ranit Aharonov, Adi Barzilai, Isaac Bentwich, Uri Einav, Shlomit Gilad, Patrick Hurban, Yael Karov, Edward K. Lobenhofer, Eilon Sharon, Yoel M. Shiboleth, Marat Shtutman, Zvi Bentwich, and Paz Einat
MicroRNA expression detected by oligonucleotide microarrays: System establishment and expression profiling in human tissues
Genome Res. 2004 14: 2486-2494. [Abstract] [Full Text] [ Supplemental Research Data]  

Christiane Honisch, Anu Raghunathan, Charles R. Cantor, Bernhard Ø. Palsson, and Dirk van den Boom
High-throughput mutation detection underlying adaptive evolution of Escherichia coli-K12
Genome Res. 2004 14: 2495-2502. [Abstract] [Full Text] [ Supplemental Research Data]  

RESOURCES:

Li Ding, Aniko Sabo, Nicolas Berkowicz, Rekha R. Meyer, Yoram Shotland, Mark R. Johnson, Kymberlie H. Pepin, Richard K. Wilson, and John Spieth
EAnnot: A genome annotation tool using experimental evidence
Genome Res. 2004 14: 2503-2509. [Abstract] [Full Text] [ Supplemental Research Data]  

ERRATA:

Correction for Volume 14, p. 2221
Genome Res. 2004 14: 2510. [Full Text]  

Correction for Volume 14, p. 1786
Genome Res. 2004 14: 2510. [Full Text]  

Correction for Volume 13, p. 875
Genome Res. 2004 14: 2510. [Full Text]  

Correction for Volume 14, p. 2279
Genome Res. 2004 14: 2510. [Full Text]  

To see an article, click its [Full Text] link. To review many abstracts, check the boxes to the left of the titles you want, and click the 'Get All Checked Abstract(s)' button. To see one abstract at a time, click its [Abstract] link.


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