COMMENTARY:

Martin Yuille, Bernhard Korn, Troy Moore, Andrew A. Farmer, John Carrino, Christa Prange, and Yoshihide Hayashizaki

The Responsibility to Share: Sharing the Responsibility
Genome Res. 2004 14: 2015-2019. [Full Text]  

INSIGHT/OUTLOOK:

David E. Hill, Michael A. Brasch, Anthony A. del Campo, Lynn Doucette-Stamm, James I. Garrels, Judith Glaven, James L. Hartley, James R. Hudson, Jr., Troy Moore, and Marc Vidal

Academia-Industry Collaboration: An Integral Element for Building "Omic" Resources
Genome Res. 2004 14: 2010-2014. [Full Text]  

PERSPECTIVES:

Michael A. Brasch, James L. Hartley, and Marc Vidal

ORFeome Cloning and Systems Biology: Standardized Mass Production of the Parts From the Parts-List
Genome Res. 2004 14: 2001-2009. [Abstract] [Full Text]  

REVIEWS:

Gerald Marsischky and Joshua LaBaer

Many Paths to Many Clones: A Comparative Look at High-Throughput Cloning Methods
Genome Res. 2004 14: 2020-2028. [Abstract] [Full Text]  

Peter Uetz, Seesandra V. Rajagopala, Yu-An Dong, and Jürgen Haas

From ORFeomes to Protein Interaction Maps in Viruses
Genome Res. 2004 14: 2029-2033. [Abstract] [Full Text] [Supplemental Research Data]  

LETTERS:

Terrence S. Furey, Mark Diekhans, Yontao Lu, Tina A. Graves, Lachlan Oddy, Jennifer Randall-Maher, LaDeana W. Hillier, Richard K. Wilson, and David Haussler

Analysis of Human mRNAs With the Reference Genome Sequence Reveals Potential Errors, Polymorphisms, and RNA Editing
Genome Res. 2004 14: 2034-2040. [Abstract] [Full Text] [Supplemental Research Data]  

David N. Messina, Jarret Glasscock, Warren Gish, and Michael Lovett

An ORFeome-based Analysis of Human Transcription Factor Genes and the Construction of a Microarray to Interrogate Their Expression
Genome Res. 2004 14: 2041-2047. [Abstract] [Full Text] [Supplemental Research Data]  

Masaaki Oyama, Chiharu Itagaki, Hiroko Hata, Yutaka Suzuki, Tomonori Izumi, Tohru Natsume, Toshiaki Isobe, and Sumio Sugano

Analysis of Small Human Proteins Reveals the Translation of Upstream Open Reading Frames of mRNAs
Genome Res. 2004 14: 2048-2052. [Abstract] [Full Text] [Supplemental Research Data]  

Maria F. Bonaldo, Thomas B. Bair, Todd E. Scheetz, Einat Snir, Ike Akabogu, Jennifer L. Bair, Brian Berger, Keith Crouch, Aja Davis, Mari E. Eyestone, Catherine Keppel, Tamara A. Kucaba, Mark Lebeck, Jenny L. Lin, Anna I.R. de Melo, Joshua Rehmann, Rebecca S. Reiter, Kelly Schaefer, Christina Smith, Dylan Tack, Kurtis Trout, Val C. Sheffield, Jim J-C. Lin, Thomas L. Casavant, and Marcelo B. Soares

1274 Full-Open Reading Frames of Transcripts Expressed in the Developing Mouse Nervous System
Genome Res. 2004 14: 2053-2063. [Abstract] [Full Text] [Supplemental Research Data]  

Philippe Lamesch, Stuart Milstein, Tong Hao, Jennifer Rosenberg, Ning Li, Reynaldo Sequerra, Stephanie Bosak, Lynn Doucette-Stamm, Jean Vandenhaute, David E. Hill, and Marc Vidal

C. elegans ORFeome Version 3.1: Increasing the Coverage of ORFeome Resources With Improved Gene Predictions
Genome Res. 2004 14: 2064-2069. [Abstract] [Full Text] [Supplemental Research Data]  

Ian A. Hope, Jonathan Stevens, Anna Garner, Josie Hayes, David L. Cheo, Michael A. Brasch, and Marc Vidal

Feasibility of Genome-Scale Construction of Promoter::Reporter Gene Fusions for Expression in Caenorhabditis elegans Using a MultiSite Gateway Recombination System
Genome Res. 2004 14: 2070-2075. [Abstract] [Full Text]  

João Carlos Aguiar, Joshua LaBaer, Peter L. Blair, Victoria Y. Shamailova, Malvika Koundinya, Joshua A. Russell, Fengying Huang, Wenhong Mar, Robert M. Anthony, Adam Witney, Sonia R. Caruana, Leonardo Brizuela, John B. Sacci, Jr., Stephen L. Hoffman, and Daniel J. Carucci

High-Throughput Generation of P. falciparum Functional Molecules by Recombinational Cloning
Genome Res. 2004 14: 2076-2082. [Abstract] [Full Text] [Supplemental Research Data]  

METHODS:

Ágnes Baross, Yaron S.N. Butterfield, Shaun M. Coughlin, Thomas Zeng, Malachi Griffith, Obi L. Griffith, Anca S. Petrescu, Duane E. Smailus, Jaswinder Khattra, Helen L. McDonald, Sheldon J. McKay, Michelle Moksa, Robert A. Holt, and Marco A. Marra

Systematic Recovery and Analysis of Full-ORF Human cDNA Clones
Genome Res. 2004 14: 2083-2092. [Abstract] [Full Text] [Supplemental Research Data]  

Bart Deplancke, Denis Dupuy, Marc Vidal, and Albertha J.M. Walhout

A Gateway-Compatible Yeast One-Hybrid System
Genome Res. 2004 14: 2093-2101. [Abstract] [Full Text]  

Chi-Hao Luan, Shihong Qiu, James B. Finley, Mike Carson, Rita J. Gray, Wenying Huang, David Johnson, Jun Tsao, Jérôme Reboul, Philippe Vaglio, David E. Hill, Marc Vidal, Lawrence J. DeLucas, and Ming Luo

High-Throughput Expression of C. elegans Proteins
Genome Res. 2004 14: 2102-2110. [Abstract] [Full Text]  

David L. Cheo, Steven A. Titus, Devon R.N. Byrd, James L. Hartley, Gary F. Temple, and Michael A. Brasch

Concerted Assembly and Cloning of Multiple DNA Segments Using In Vitro Site-Specific Recombination: Functional Analysis of Multi-Segment Expression Clones
Genome Res. 2004 14: 2111-2120. [Abstract] [Full Text] [Supplemental Research Data]  

RESOURCES:

The MGC Project Team

The Status, Quality, and Expansion of the NIH Full-Length cDNA Project: The Mammalian Gene Collection (MGC)
Genome Res. 2004 14: 2121-2127. [Abstract] [Full Text] [Supplemental Research Data]  

Jean-François Rual, Tomoko Hirozane-Kishikawa, Tong Hao, Nicolas Bertin, Siming Li, Amélie Dricot, Ning Li, Jennifer Rosenberg, Philippe Lamesch, Pierre-Olivier Vidalain, Tracey R. Clingingsmith, James L. Hartley, Dominic Esposito, David Cheo, Troy Moore, Blake Simmons, Reynaldo Sequerra, Stephanie Bosak, Lynn Doucette-Stamm, Christian Le Peuch, Jean Vandenhaute, Michael E. Cusick, Joanna S. Albala, David E. Hill, and Marc Vidal

Human ORFeome Version 1.1: A Platform for Reverse Proteomics
Genome Res. 2004 14: 2128-2135. [Abstract] [Full Text] [Supplemental Research Data]  

Stefan Wiemann, Dorit Arlt, Wolfgang Huber, Ruth Wellenreuther, Simone Schleeger, Alexander Mehrle, Stephanie Bechtel, Mamatha Sauermann, Ulrike Korf, Rainer Pepperkok, Holger Sültmann, and Annemarie Poustka

From ORFeome to Biology: A Functional Genomics Pipeline
Genome Res. 2004 14: 2136-2144. [Abstract] [Full Text]  

Mark R. Chance, Andras Fiser, Andrej Sali, Ursula Pieper, Narayanan Eswar, Guiping Xu, J. Eduardo Fajardo, Thirumuruhan Radhakannan, and Nebojsa Marinkovic

High-Throughput Computational and Experimental Techniques in Structural Genomics
Genome Res. 2004 14: 2145-2154. [Abstract] [Full Text]  

Nansheng Chen, Daniel Lawson, Keith Bradnam, Todd W. Harris, and Lincoln D. Stein

WormBase as an Integrated Platform for the C. elegans ORFeome
Genome Res. 2004 14: 2155-2161. [Abstract] [Full Text]  

Jean-François Rual, Julian Ceron, John Koreth, Tong Hao, Anne-Sophie Nicot, Tomoko Hirozane-Kishikawa, Jean Vandenhaute, Stuart H. Orkin, David E. Hill, Sander van den Heuvel, and Marc Vidal

Toward Improving Caenorhabditis elegans Phenome Mapping With an ORFeome-Based RNAi Library
Genome Res. 2004 14: 2162-2168. [Abstract] [Full Text] [Supplemental Research Data]  

Denis Dupuy, Qian-Ru Li, Bart Deplancke, Mike Boxem, Tong Hao, Philippe Lamesch, Reynaldo Sequerra, Stephanie Bosak, Lynn Doucette-Stamm, Ian A. Hope, David E. Hill, Albertha J.M. Walhout, and Marc Vidal

A First Version of the Caenorhabditis elegans Promoterome
Genome Res. 2004 14: 2169-2175. [Abstract] [Full Text]  

Pierre Hilson, Joke Allemeersch, Thomas Altmann, Sébastien Aubourg, Alexandra Avon, Jim Beynon, Rishikesh P. Bhalerao, Frédérique Bitton, Michel Caboche, Bernard Cannoot, Vasil Chardakov, Cécile Cognet-Holliger, Vincent Colot, Mark Crowe, Caroline Darimont, Steffen Durinck, Holger Eickhoff, Andéol Falcon de Longevialle, Edward E. Farmer, Murray Grant, Martin T.R. Kuiper, Hans Lehrach, Céline Léon, Antonio Leyva, Joakim Lundeberg, Claire Lurin, Yves Moreau, Wilfried Nietfeld, Javier Paz-Ares, Philippe Reymond, Pierre Rouzé, Goran Sandberg, Maria Dolores Segura, Carine Serizet, Alexandra Tabrett, Ludivine Taconnat, Vincent Thareau, Paul Van Hummelen, Steven Vercruysse, Marnik Vuylsteke, Magdalena Weingartner, Peter J. Weisbeek, Valtteri Wirta, Floyd R.A. Wittink, Marc Zabeau, and Ian Small

Versatile Gene-Specific Sequence Tags for Arabidopsis Functional Genomics: Transcript Profiling and Reverse Genetics Applications
Genome Res. 2004 14: 2176-2189. [Abstract] [Full Text] [Supplemental Research Data]  

Joshua LaBaer, QingQing Qiu, Anukanth Anumanthan, Wenhong Mar, Dongmei Zuo, T.V.S. Murthy, Helen Taycher, Allison Halleck, Eugenie Hainsworth, Stephen Lory, and Leonardo Brizuela

The Pseudomonas aeruginosa PA01 Gene Collection
Genome Res. 2004 14: 2190-2200. [Abstract] [Full Text] [Supplemental Research Data]  

Amélie Dricot, Jean-François Rual, Philippe Lamesch, Nicolas Bertin, Denis Dupuy, Tong Hao, Christophe Lambert, Régis Hallez, Jean-Marc Delroisse, Jean Vandenhaute, Ignacio Lopez-Goñi, Ignacio Moriyon, Juan M. Garcia-Lobo, Félix J. Sangari, Alastair P. MacMillan, Sally J. Cutler, Adrian M. Whatmore, Stephanie Bozak, Reynaldo Sequerra, Lynn Doucette-Stamm, Marc Vidal, David E. Hill, Jean-Jacques Letesson, and Xavier De Bolle

Generation of the Brucella melitensis ORFeome Version 1.1
Genome Res. 2004 14: 2201-2206. [Abstract] [Full Text]  

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