ARTICLES:

Alan T. Bankier, Helen F. Spriggs, Berthold Fartmann, Bernard A. Konfortov, Martin Madera, Christine Vogel, Sarah A. Teichmann, Al Ivens, and Paul H. Dear

Integrated Mapping, Chromosomal Sequencing and Sequence Analysis of Cryptosporidium parvum
Genome Res. 2003 13: 1787-1799. Published in Advance July 17, 2003, 10.1101/gr.1555203 [Abstract] [Full Text] [PDF] [Supplemental Research Data]  

Didier Raoult, Hiroyuki Ogata, Stéphane Audic, Catherine Robert, Karsten Suhre, Michel Drancourt, and Jean-Michel Claverie

Tropheryma whipplei Twist: A Human Pathogenic Actinobacteria With a Reduced Genome
Genome Res. 2003 13: 1800-1809. [Abstract] [Full Text] [PDF] [Supplemental Research Data]  

LETTERS:

Xianwu Guo, Margarita Flores, Patrick Mavingui, Sara Isabel Fuentes, Georgina Hernández, Guillermo Dávila, and Rafael Palacios

Natural Genomic Design in Sinorhizobium meliloti: Novel Genomic Architectures
Genome Res. 2003 13: 1810-1817. [Abstract] [Full Text] [PDF] [Supplemental Research Data]  

Mark E. Sorrells, Mauricio La Rota, Catherine E. Bermudez-Kandianis, Robert A. Greene, Ramesh Kantety, Jesse D. Munkvold, Miftahudin, Ahmed Mahmoud, Xuefeng Ma, Perry J. Gustafson, Lili L. Qi, Benjamin Echalier, Bikram S. Gill, David E. Matthews, Gerard R. Lazo, Shiaoman Chao, Olin D. Anderson, Hugh Edwards, Anna M. Linkiewicz, Jorge Dubcovsky, Eduard D. Akhunov, Jan Dvorak, Deshui Zhang, Henry T. Nguyen, Junhua Peng, Nora L.V. Lapitan, Jose L. Gonzalez-Hernandez, James A. Anderson, Khwaja Hossain, Venu Kalavacharla, Shahryar F. Kianian, Dong-Woog Choi, Timothy J. Close, Muharrem Dilbirligi, Kulvinder S. Gill, Camille Steber, Mary K. Walker-Simmons, Patrick E. McGuire, and Calvin O. Qualset

Comparative DNA Sequence Analysis of Wheat and Rice Genomes
Genome Res. 2003 13: 1818-1827. [Abstract] [Full Text] [PDF] [Supplemental Research Data]  

Art B. Owen, Josh Stuart, Kathy Mach, Anne M. Villeneuve, and Stuart Kim

A Gene Recommender Algorithm to Identify Coexpressed Genes in C. elegans
Genome Res. 2003 13: 1828-1837. [Abstract] [Full Text] [PDF] [Supplemental Research Data]  

Sven Nelander, Petter Mostad, and Per Lindahl

Prediction of Cell Type-Specific Gene Modules: Identification and Initial Characterization of a Core Set of Smooth Muscle-Specific Genes
Genome Res. 2003 13: 1838-1854. Published in Advance July 17, 2003, 10.1101/gr.1197303 [Abstract] [Full Text] [PDF] [Supplemental Research Data]  

H. Shuen Lo, Zhining Wang, Ying Hu, Howard H. Yang, Sheryl Gere, Kenneth H. Buetow, and Maxwell P. Lee

Allelic Variation in Gene Expression Is Common in the Human Genome
Genome Res. 2003 13: 1855-1862. [Abstract] [Full Text] [PDF] [Supplemental Research Data]  

Edward Yang, Erik van Nimwegen, Mihaela Zavolan, Nikolaus Rajewsky, Mark Schroeder, Marcelo Magnasco, and James E. Darnell, Jr

Decay Rates of Human mRNAs: Correlation With Functional Characteristics and Sequence Attributes
Genome Res. 2003 13: 1863-1872. [Abstract] [Full Text] [PDF] [Supplemental Research Data]  

Gane Ka-Shu Wong, Zhiyong Yang, Douglas A. Passey, Miho Kibukawa, Marcia Paddock, Chun-Rong Liu, Lars Bolund, and Jun Yu

A Population Threshold for Functional Polymorphisms
Genome Res. 2003 13: 1873-1879. [Abstract] [Full Text] [PDF]  

William J. Murphy, Lutz Frönicke, Stephen J. O'Brien, and Roscoe Stanyon

The Origin of Human Chromosome 1 and Its Homologs in Placental Mammals
Genome Res. 2003 13: 1880-1888. Published in Advance July 17, 2003, 10.1101/gr.1022303 [Abstract] [Full Text] [PDF] [Supplemental Research Data]  

Emmanuelle Lerat, Carène Rizzon, and Christian Biémont

Sequence Divergence Within Transposable Element Families in the Drosophila melanogaster Genome
Genome Res. 2003 13: 1889-1896. Published in Advance July 17, 2003, 10.1101/gr.827603 [Abstract] [Full Text] [PDF] [Supplemental Research Data]  

Stephen I. Wright, Newton Agrawal, and Thomas E. Bureau

Effects of Recombination Rate and Gene Density on Transposable Element Distributions in Arabidopsis thaliana
Genome Res. 2003 13: 1897-1903. [Abstract] [Full Text] [PDF] [Supplemental Research Data]  

METHODS:

Shawn Hoon, Kiran Kumar Ratnapu, Jer-ming Chia, Balamurugan Kumarasamy, Xiao Juguang, Michele Clamp, Arne Stabenau, Simon Potter, Laura Clarke, and Elia Stupka

Biopipe: A Flexible Framework for Protocol-Based Bioinformatics Analysis
Genome Res. 2003 13: 1904-1915. Published in Advance July 17, 2003, 10.1101/gr.1363103 [Abstract] [Full Text] [PDF] [Supplemental Research Data]  

Xiaoman Li and Michael S. Waterman

Estimating the Repeat Structure and Length of DNA Sequences Using -Tuples
Genome Res. 2003 13: 1916-1922. [Abstract] [Full Text] [PDF] [Supplemental Research Data]  

Vladimir B. Bajic and Seng Hong Seah

Dragon Gene Start Finder: An Advanced System for Finding Approximate Locations of the Start of Gene Transcriptional Units
Genome Res. 2003 13: 1923-1929. Published in Advance July 17, 2003, 10.1101/gr.869803 [Abstract] [Full Text] [PDF]  

Daniel Kotlar and Yizhar Lavner

Gene Prediction by Spectral Rotation Measure: A New Method for Identifying Protein-Coding Regions
Genome Res. 2003 13: 1930-1937. Published in Advance July 17, 2003, 10.1101/gr.1261703 [Abstract] [Full Text] [PDF]  

Ruoying Tan, Xin Jiang, Alan Jackson, Pei Jin, Junming Yang, Ernestine Lee, Brendan Duggan, Laura L. Stuve, and Glenn K. Fu

E. coli Selection of Human Genes Encoding Secreted and Membrane Proteins Based on cDNA Fusions to a Leaderless -Lactamase Reporter
Genome Res. 2003 13: 1938-1943. Published in Advance July 17, 2003, 10.1101/gr.1000903 [Abstract] [Full Text] [PDF]  

Cheryl A. Telmer, Adam R. Retchless, Ashley D. Kinsey, Yvette Conley, Brian Rigatti, Michael B. Gorin, and Jonathan W. Jarvik

Detection and Assignment of Mutations and Minihaplotypes in Human DNA Using Peptide Mass Signature Genotyping (PMSG): Application to the Human RDS/Peripherin Gene
Genome Res. 2003 13: 1944-1951. [Abstract] [Full Text] [PDF]  

Nadia Tahri-Daizadeh, David-Alexandre Tregouet, Viviane Nicaud, Nicolas Manuel, François Cambien, and Laurence Tiret

Automated Detection of Informative Combined Effects in Genetic Association Studies of Complex Traits
Genome Res. 2003 13: 1952-1960. [Abstract] [Full Text] [PDF]  

Vladimir R. Kaberdin and Kenneth J. McDowall

Expanding the Use of Zymography by the Chemical Linkage of Small, Defined Substrates to the Gel Matrix
Genome Res. 2003 13: 1961-1965. [Abstract] [Full Text] [PDF]  

RESOURCES:

Denis M. Larkin, Annelie Everts-van der Wind, Mark Rebeiz, Peter A. Schweitzer, Sharon Bachman, Cheryl Green, Chris L. Wright, Edhilvia J. Campos, Leslie D. Benson, Jennifer Edwards, Lei Liu, Kazutoyo Osoegawa, James E. Womack, Pieter J. de Jong, and Harris A. Lewin

A Cattle–Human Comparative Map Built with Cattle BAC-Ends and Human Genome Sequence
Genome Res. 2003 13: 1966-1972. [Abstract] [Full Text] [PDF] [Supplemental Research Data]  

ERRATA:

Correction for Volume 13, p. 1111
Genome Res. 2003 13: 1973. [Full Text] [PDF]  

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