ARTICLES:

Eduard D. Akhunov, Andrew W. Goodyear, Shu Geng, Li-Li Qi, Benjamin Echalier, Bikram S. Gill, Miftahudin, J. Perry Gustafson, Gerard Lazo, Shiaoman Chao, Olin D. Anderson, Anna M. Linkiewicz, Jorge Dubcovsky, Mauricio La Rota, Mark E. Sorrells, Deshui Zhang, Henry T. Nguyen, Venugopal Kalavacharla, Khwaja Hossain, Shahryar F. Kianian, Junhua Peng, Nora L.V. Lapitan, Jose L. Gonzalez-Hernandez, James A. Anderson, Dong-Woog Choi, Timothy J. Close, Muharrem Dilbirligi, Kulvinder S. Gill, M. Kay Walker-Simmons, Camille Steber, Patrick E. McGuire, Calvin O. Qualset, and Jan Dvorak

The Organization and Rate of Evolution of Wheat Genomes Are Correlated With Recombination Rates Along Chromosome Arms
Genome Res. 2003 13: 753-763. Published in Advance April 14, 2003, 10.1101/gr.808603 [Abstract] [Full Text] [PDF]  

Uberto Pozzoli, Greg Elgar, Rachele Cagliani, Laura Riva, Giacomo P. Comi, Nereo Bresolin, Alessandra Bardoni, and Manuela Sironi

Comparative Analysis of Vertebrate Dystrophin Loci Indicate Intron Gigantism as a Common Feature
Genome Res. 2003 13: 764-772. [Abstract] [Full Text] [PDF] [Supplemental Research Data]  

Ran Elkon, Chaim Linhart, Roded Sharan, Ron Shamir, and Yosef Shiloh

Genome-Wide In Silico Identification of Transcriptional Regulators Controlling the Cell Cycle in Human Cells
Genome Res. 2003 13: 773-780. [Abstract] [Full Text] [PDF] [Supplemental Research Data]  

Tera Newman and Barbara J. Trask

Complex Evolution of 7E Olfactory Receptor Genes in Segmental Duplications
Genome Res. 2003 13: 781-793. [Abstract] [Full Text] [PDF] [Supplemental Research Data] [Correction]  

LETTERS:

Austin L. Hughes and Robert Friedman

Parallel Evolution by Gene Duplication in the Genomes of Two Unicellular Fungi
Genome Res. 2003 13: 794-799. [Abstract] [Full Text] [PDF] [Supplemental Research Data]  

Liora Z. Strichman-Almashanu, Michael Bustin, and David Landsman

Retroposed Copies of the HMG Genes: A Window to Genome Dynamics
Genome Res. 2003 13: 800-812. [Abstract] [Full Text] [PDF]  

Gregory M. Cooper, Michael Brudno, NISC Comparative Sequencing Program, Eric D. Green, Serafim Batzoglou, and Arend Sidow

Quantitative Estimates of Sequence Divergence for Comparative Analyses of Mammalian Genomes
Genome Res. 2003 13: 813-820. [Abstract] [Full Text] [PDF] [Supplemental Research Data]  

Daniel E. Neafsey and Stephen R. Palumbi

Genome Size Evolution in Pufferfish: A Comparative Analysis of Diodontid and Tetraodontid Pufferfish Genomes
Genome Res. 2003 13: 821-830. [Abstract] [Full Text] [PDF]  

Ines Hellmann, Sebastian Zöllner, Wolfgang Enard, Ingo Ebersberger, Birgit Nickel, and Svante Pääbo

Selection on Human Genes as Revealed by Comparisons to Chimpanzee cDNA
Genome Res. 2003 13: 831-837. [Abstract] [Full Text] [PDF]  

Sankar Subramanian and Sudhir Kumar

Neutral Substitutions Occur at a Faster Rate in Exons Than in Noncoding DNA in Primate Genomes
Genome Res. 2003 13: 838-844. [Abstract] [Full Text] [PDF]  

Rebecca C.J. Twells, Charles A. Mein, Michael S. Phillips, J. Fred Hess, Riitta Veijola, Matthew Gilbey, Matthew Bright, Michael Metzker, Benedicte A. Lie, Amanda Kingsnorth, Edward Gregory, Yusuke Nakagawa, Hywel Snook, William Y.S. Wang, Jennifer Masters, Gillian Johnson, Iain Eaves, Joanna M.M. Howson, David Clayton, Heather J. Cordell, Sarah Nutland, Helen Rance, Philippa Carr, and John A. Todd

Haplotype Structure, LD Blocks, and Uneven Recombination Within the LRP5 Gene
Genome Res. 2003 13: 845-855. [Abstract] [Full Text] [PDF]  

France Denoeud, Gilles Vergnaud, and Gary Benson

Predicting Human Minisatellite Polymorphism
Genome Res. 2003 13: 856-867. Published in Advance April 14, 2003, 10.1101/gr.574403 [Abstract] [Full Text] [PDF] [Supplemental Research Data]  

Toshikazu Ushijima, Naoko Watanabe, Eriko Okochi, Atsushi Kaneda, Takashi Sugimura, and Kazuaki Miyamoto

Fidelity of the Methylation Pattern and Its Variation in the Genome
Genome Res. 2003 13: 868-874. [Abstract] [Full Text] [PDF] [Supplemental Research Data]  

Jennifer M. Lee and Erik L.L. Sonnhammer

Genomic Gene Clustering Analysis of Pathways in Eukaryotes
Genome Res. 2003 13: 875-882. Published in Advance April 14, 2003, 10.1101/gr.737703 [Abstract] [Full Text] [PDF]  

METHODS:

Laurence M. Ettwiller, Johan Rung, and Ewan Birney

Discovering Novel cis-Regulatory Motifs Using Functional Networks
Genome Res. 2003 13: 883-895. [Abstract] [Full Text] [PDF]  

Oliver D. King, Rebecca E. Foulger, Selina S. Dwight, James V. White, and Frederick P. Roth

Predicting Gene Function From Patterns of Annotation
Genome Res. 2003 13: 896-904. Published in Advance April 14, 2003, 10.1101/gr.440803 [Abstract] [Full Text] [PDF]  

Irene Castaño, Rupinder Kaur, Shihjung Pan, Robert Cregg, Alejandro De Las Peñas, Nini Guo, Matthew C. Biery, Nancy L. Craig, and Brendan P. Cormack

Tn7-Based Genome-Wide Random Insertional Mutagenesis of Candida glabrata
Genome Res. 2003 13: 905-915. Published in Advance April 14, 2003, 10.1101/gr.848203 [Abstract] [Full Text] [PDF]  

Magnus Jobs, W. Mathias Howell, Linda Strömqvist, Torsten Mayr, and Anthony J. Brookes

DASH-2: Flexible, Low-Cost, and High-Throughput SNP Genotyping by Dynamic Allele-Specific Hybridization on Membrane Arrays
Genome Res. 2003 13: 916-924. [Abstract] [Full Text] [PDF]  

Patrick Cahill, Michele Bakis, James Hurley, Veena Kamath, William Nielsen, Dina Weymouth, Josée Dupuis, Lynn Doucette-Stamm, and Douglas R. Smith

Exo-Proofreading, A Versatile SNP Scoring Technology
Genome Res. 2003 13: 925-931. Published in Advance April 14, 2003, 10.1101/gr.939903 [Abstract] [Full Text] [PDF]  

Ming Xiao and Pui-Yan Kwok

DNA Analysis by Fluorescence Quenching Detection
Genome Res. 2003 13: 932-939. [Abstract] [Full Text] [PDF]  

Daniel R. Fuhrmann, Martin I. Krzywinski, Readman Chiu, Parvaneh Saeedi, Jacqueline E. Schein, Ian E. Bosdet, Asif Chinwalla, LaDeana W. Hillier, Robert H. Waterston, John D. McPherson, Steven J.M. Jones, and Marco A. Marra

Software for Automated Analysis of DNA Fingerprinting Gels
Genome Res. 2003 13: 940-953. [Abstract] [Full Text] [PDF]  

Seiyu Hosono, A. Fawad Faruqi, Frank B. Dean, Yuefen Du, Zhenyu Sun, Xiaohong Wu, Jing Du, Stephen F. Kingsmore, Michael Egholm, and Roger S. Lasken

Unbiased Whole-Genome Amplification Directly From Clinical Samples
Genome Res. 2003 13: 954-964. Published in Advance April 14, 2003, 10.1101/gr.816903 [Abstract] [Full Text] [PDF]  

Astrid Lægreid, Torgeir R. Hvidsten, Herman Midelfart, Jan Komorowski, and Arne K. Sandvik

Predicting Gene Ontology Biological Process From Temporal Gene Expression Patterns
Genome Res. 2003 13: 965-979. Published in Advance April 14, 2003, 10.1101/gr.1144503 [Abstract] [Full Text] [PDF] [Supplemental Research Data]  

Paola Zacchi, Daniele Sblattero, Fiorella Florian, Roberto Marzari, and Andrew R.M. Bradbury

Selecting Open Reading Frames From DNA
Genome Res. 2003 13: 980-990. [Abstract] [Full Text] [PDF]  

Maria J. Martín, Javier Herrero, Alvaro Mateos, and Joaquin Dopazo

Comparing Bacterial Genomes Through Conservation Profiles
Genome Res. 2003 13: 991-998. Published in Advance April 14, 2003, 10.1101/gr.678303 [Abstract] [Full Text] [PDF]  

Steve Hampson, Aoife McLysaght, Brandon Gaut, and Pierre Baldi

LineUp: Statistical Detection of Chromosomal Homology With Application to Plant Comparative Genomics
Genome Res. 2003 13: 999-1010. Published in Advance April 14, 2003, 10.1101/gr.814403 [Abstract] [Full Text] [PDF]  

RESOURCES:

Mark G. Carter, Toshio Hamatani, Alexei A. Sharov, Condie E. Carmack, Yong Qian, Kazuhiro Aiba, Naomi T. Ko, Dawood B. Dudekula, Pius M. Brzoska, S. Stuart Hwang, and Minoru S.H. Ko

In Situ-Synthesized Novel Microarray Optimized for Mouse Stem Cell and Early Developmental Expression Profiling
Genome Res. 2003 13: 1011-1021. [Abstract] [Full Text] [PDF] [Supplemental Research Data]  

Ryuichi Sakate, Naoki Osada, Munetomo Hida, Sumio Sugano, Ikuo Hayasaka, Naoko Shimohira, Shinsuke Yanagi, Yumiko Suto, Katsuyuki Hashimoto, and Momoki Hirai

Analysis of 5'-End Sequences of Chimpanzee cDNAs
Genome Res. 2003 13: 1022-1026. [Abstract] [Full Text] [PDF] [Supplemental Research Data]  

ERRATUM:

Erratum for vol. 13, p. 264
Genome Res. 2003 13: 1027. [Full Text] [PDF]  

Erratum for vol. 13, p. 485
Genome Res. 2003 13: 1027. [Full Text]  

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