ARTICLES:

Noël Ghanem, Olga Jarinova, Angel Amores, Qiaoming Long, Gary Hatch, Byung Keon Park, John L.R. Rubenstein, and Marc Ekker

Regulatory Roles of Conserved Intergenic Domains in Vertebrate Dlx Bigene Clusters
Genome Res. 2003 13: 533-543. [Abstract] [Full Text] [Supplemental Research Data]  

Steven E. Massey, Gabriela Moura, Pedro Beltrão, Ricardo Almeida, James R. Garey, Mick F. Tuite, and Manuel A.S. Santos

Comparative Evolutionary Genomics Unveils the Molecular Mechanism of Reassignment of the CTG Codon in Candida spp.
Genome Res. 2003 13: 544-557. [Abstract] [Full Text]  

Rachel J. Smith, Wendy Dean, Galia Konfortova, and Gavin Kelsey

Identification of Novel Imprinted Genes in a Genome-Wide Screen for Maternal Methylation
Genome Res. 2003 13: 558-569. [Abstract] [Full Text]  

LETTERS:

Luiz R. Nunes, Yoko B. Rosato, Nair H. Muto, Giane M. Yanai, Vivian S. da Silva, Daniela B. Leite, Edmilson R. Gonçalves, Alessandra A. de Souza, Helvécio D. Coletta-Filho, Marcos A. Machado, Silvio A. Lopes, and Regina Costa de Oliveira

Microarray Analyses of Xylella fastidiosa Provide Evidence of Coordinated Transcription Control of Laterally Transferred Elements
Genome Res. 2003 13: 570-578. [Abstract] [Full Text] [Supplemental Research Data]  

Alexander P. Lifanov, Vsevolod J. Makeev, Anna G. Nazina, and Dmitri A. Papatsenko

Homotypic Regulatory Clusters in Drosophila
Genome Res. 2003 13: 579-588. [Abstract] [Full Text]  

Toyoyuki Takada, Attila Kumánovics, Claire Amadou, Masayasu Yoshino, Elsy P. Jones, Maria Athanasiou, Glen A. Evans, and Kirsten Fischer Lindahl

Species-Specific Class I Gene Expansions Formed the Telomeric 1 Mb of the Mouse Major Histocompatibility Complex
Genome Res. 2003 13: 589-600. [Abstract] [Full Text] [Supplemental Research Data]  

Yimin Wu, Xiangyun Wang, Xia Liu, and Yufeng Wang

Data-Mining Approaches Reveal Hidden Families of Proteases in the Genome of Malaria Parasite
Genome Res. 2003 13: 601-616. [Abstract] [Full Text] [Supplemental Research Data]  

Gregory J. Gatto, Jr. and Jeremy M. Berg

Nonrandom Tripeptide Sequence Distributions at Protein Carboxyl Termini
Genome Res. 2003 13: 617-623. [Abstract] [Full Text]  

Manfred Kayser, Silke Brauer, Hiltrud Schädlich, Mechthild Prinz, Mark A. Batzer, Peter A. Zimmerman, B. A. Boatin, and Mark Stoneking

Y Chromosome STR Haplotypes and the Genetic Structure of U.S. Populations of African, European, and Hispanic Ancestry
Genome Res. 2003 13: 624-634. [Abstract] [Full Text]  

METHODS:

Ben J. Hayes, Peter M. Visscher, Helen C. McPartlan, and Mike E. Goddard

Novel Multilocus Measure of Linkage Disequilibrium to Estimate Past Effective Population Size
Genome Res. 2003 13: 635-643. Published in Advance March 12, 2003, 10.1101/gr.387103 [Abstract] [Full Text]  

Igor Y. Goryshin, Todd A. Naumann, Jennifer Apodaca, and William S. Reznikoff

Chromosomal Deletion Formation System Based on Tn5 Double Transposition: Use For Making Minimal Genomes and Essential Gene Analysis
Genome Res. 2003 13: 644-653. Published in Advance March 12, 2003, 10.1101/gr.611403 [Abstract] [Full Text] [Supplemental Research Data]  

Rongxiang Liu, Richard C. McEachin, and David J. States

Computationally Identifying Novel NF-B-Regulated Immune Genes in the Human Genome
Genome Res. 2003 13: 654-661. Published in Advance March 12, 2003, 10.1101/gr.911803 [Abstract] [Full Text]  

Evelyn Camon, Michele Magrane, Daniel Barrell, David Binns, Wolfgang Fleischmann, Paul Kersey, Nicola Mulder, Tom Oinn, John Maslen, Anthony Cox, and Rolf Apweiler

The Gene Ontology Annotation (GOA) Project: Implementation of GO in SWISS-PROT, TrEMBL, and InterPro
Genome Res. 2003 13: 662-672. Published in Advance March 12, 2003, 10.1101/gr.461403 [Abstract] [Full Text]  

Andrew F. Neuwald, Natarajan Kannan, Aleksandar Poleksic, Naoya Hata, and Jun S. Liu

Ran's C-terminal, Basic Patch, and Nucleotide Exchange Mechanisms in Light of a Canonical Structure for Rab, Rho, Ras, and Ran GTPases
Genome Res. 2003 13: 673-692. [Abstract] [Full Text] [Supplemental Research Data]  

Takashi Abe, Shigehiko Kanaya, Makoto Kinouchi, Yuta Ichiba, Tokio Kozuki, and Toshimichi Ikemura

Informatics for Unveiling Hidden Genome Signatures
Genome Res. 2003 13: 693-702. [Abstract] [Full Text] [Supplemental Research Data]  

Yuval Kluger, Ronen Basri, Joseph T. Chang, and Mark Gerstein

Spectral Biclustering of Microarray Data: Coclustering Genes and Conditions
Genome Res. 2003 13: 703-716. [Abstract] [Full Text]  

Raymond D. Miller, Shenghui Duan, Elizabeth G. Lovins, Ellen F. Kloss, and Pui-Yan Kwok

Efficient High-Throughput Resequencing of Genomic DNA
Genome Res. 2003 13: 717-720. Published in Advance March 12, 2003, 10.1101/gr.886203 [Abstract] [Full Text]  

Michael Brudno, Chuong B. Do, Gregory M. Cooper, Michael F. Kim, Eugene Davydov, NISC Comparative Sequencing Program, Eric D. Green, Arend Sidow, and Serafim Batzoglou

LAGAN and Multi-LAGAN: Efficient Tools for Large-Scale Multiple Alignment of Genomic DNA
Genome Res. 2003 13: 721-731. Published in Advance March 12, 2003, 10.1101/gr.926603 [Abstract] [Full Text]  

RESOURCES:

Belinda Giardine, Laura Elnitski, Cathy Riemer, Izabela Makalowska, Scott Schwartz, Webb Miller, and Ross C. Hardison

GALA, a Database for Genomic Sequence Alignments and Annotations
Genome Res. 2003 13: 732-741. [Abstract] [Full Text]  

Bhanu P. Chowdhary, Terje Raudsepp, Srinivas R. Kata, Glenda Goh, Lee V. Millon, Veronica Allan, François Piumi, Gérard Guérin, June Swinburne, Matthew Binns, Teri L. Lear, Jim Mickelson, James Murray, Douglas F. Antczak, James E. Womack, and Loren C. Skow

The First-Generation Whole-Genome Radiation Hybrid Map in the Horse Identifies Conserved Segments in Human and Mouse Genomes
Genome Res. 2003 13: 742-751. [Abstract] [Full Text] [Supplemental Research Data/Fig. 1]  

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