Genome Research -- Table of Contents (13 [3])

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Volume 13, Issue 3: March 2003 [Index by Author] [Cover Caption]

Other Issues:

ARTICLES

LETTERS

METHODS

RESOURCES

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To see an article, click its [Full Text] or [PDF] link. To review many abstracts, check the boxes to the left of the titles you want, and click the 'Get All Checked Abstract(s)' button. To see one abstract at a time, click its [Abstract] link.

ARTICLES:

Heenam Kim, Erik C. Snesrud, Brian Haas, Foo Cheung, Christopher D. Town, and John Quackenbush: Gene Expression Analyses of Arabidopsis Chromosome 2 Using a Genomic DNA Amplicon Microarray
Genome Res. 2003 13: 327-340. [Abstract] [Full Text] [PDF]

Kelly A. Frazer, Xiyin Chen, David A. Hinds, P.V. Krishna Pant, Nila Patil, and David R. Cox: Genomic DNA Insertions and Deletions Occur Frequently Between Humans and Nonhuman Primates
Genome Res. 2003 13: 341-346. Published in Advance February 12, 2003, 10.1101/gr.554603 [Abstract] [Full Text] [PDF] [Supplemental Research Data]

Devin P. Locke, Richard Segraves, Lucia Carbone, Nicoletta Archidiacono, Donna G. Albertson, Daniel Pinkel, and Evan E. Eichler: Large-Scale Variation Among Human and Great Ape Genomes Determined by Array Comparative Genomic Hybridization
Genome Res. 2003 13: 347-357. [Abstract] [Full Text] [PDF] [Supplemental Research Data]

LETTERS:

Ge Liu, NISC Comparative Sequencing Program, Shaying Zhao, Jeffrey A. Bailey, S. Cenk Sahinalp, Can Alkan, Eray Tuzun, Eric D. Green, and Evan E. Eichler: Analysis of Primate Genomic Variation Reveals a Repeat-Driven Expansion of the Human Genome
Genome Res. 2003 13: 358-368. [Abstract] [Full Text] [PDF]

Anouk Courseaux, Florence Richard, Josiane Grosgeorge, Christine Ortola, Agnes Viale, Claude Turc-Carel, Bernard Dutrillaux, Patrick Gaudray, and Jean-Louis Nahon: Segmental Duplications in Euchromatic Regions of Human Chromosome 5: A Source of Evolutionary Instability and Transcriptional Innovation
Genome Res. 2003 13: 369-381. Published in Advance February 12, 2003, 10.1101/gr.490303 [Abstract] [Full Text] [PDF] [Supplemental Research Data]

John S. Taylor, Ingo Braasch, Tancred Frickey, Axel Meyer, and Yves Van de Peer: Genome Duplication, a Trait Shared by 22,000 Species of Ray-Finned Fish
Genome Res. 2003 13: 382-390. [Abstract] [Full Text] [PDF] [Supplemental Research Data] [Supplemental Reseach Data]

Marie-Claude Geoffroy, Stéphanie Floquet, Arnaud Métais, Xavier Nassif, and Vladimir Pelicic: Large-Scale Analysis of the Meningococcus Genome by Gene Disruption: Resistance to Complement-Mediated Lysis
Genome Res. 2003 13: 391-398. Published in Advance February 12, 2003, 10.1101/gr.664303 [Abstract] [Full Text] [PDF]

Anabelle Decottignies, Isabel Sanchez-Perez, and Paul Nurse: Schizosaccharomyces pombe Essential Genes: A Pilot Study
Genome Res. 2003 13: 399-406. [Abstract] [Full Text] [PDF]

J. Kirk Harris, Scott T. Kelley, George B. Spiegelman, and Norman R. Pace: The Genetic Core of the Universal Ancestor
Genome Res. 2003 13: 407-412. Published in Advance February 12, 2003, 10.1101/gr.652803 [Abstract] [Full Text] [PDF]

Örjan Carlborg, Susanne Kerje, Karin Schütz, Lina Jacobsson, Per Jensen, and Leif Andersson: A Global Search Reveals Epistatic Interaction Between QTL for Early Growth in the Chicken
Genome Res. 2003 13: 413-421. [Abstract] [Full Text] [PDF] [Supplemental Research Data]

José Manuel Peregrin-Alvarez, Sophia Tsoka, and Christos A. Ouzounis: The Phylogenetic Extent of Metabolic Enzymes and Pathways
Genome Res. 2003 13: 422-427. [Abstract] [Full Text] [PDF]

Dean A. Rowe-Magnus, Anne-Marie Guerout, Latefa Biskri, Philippe Bouige, and Didier Mazel: Comparative Analysis of Superintegrons: Engineering Extensive Genetic Diversity in the Vibrionaceae
Genome Res. 2003 13: 428-442. [Abstract] [Full Text] [PDF] [Supplemental Research Data]

Li Li, Brian P. Brunk, Jessica C. Kissinger, Deana Pape, Keliang Tang, Robert H. Cole, John Martin, Todd Wylie, Mike Dante, Steven J. Fogarty, Daniel K. Howe, Paul Liberator, Carmen Diaz, Jennifer Anderson, Michael White, Maria E. Jerome, Emily A. Johnson, Jay A. Radke, Christian J. Stoeckert, Jr., Robert H. Waterston, Sandra W. Clifton, David S. Roos, and L. David Sibley: Gene Discovery in the Apicomplexa as Revealed by EST Sequencing and Assembly of a Comparative Gene Database
Genome Res. 2003 13: 443-454. [Abstract] [Full Text] [PDF]

Jane Lo, Sorcheng Lee, Min Xu, Feng Liu, Hua Ruan, Alvin Eun, Yawen He, Weiping Ma, Weefuen Wang, Zilong Wen, and Jinrong Peng: 15,000 Unique Zebrafish EST Clusters and Their Future Use in Microarray for Profiling Gene Expression Patterns During Embryogenesis
Genome Res. 2003 13: 455-466. [Abstract] [Full Text] [PDF] [Supplemental Research Data]

METHODS:

Tomoharu Kajiyama, Yuji Miyahara, Larry J. Kricka, Peter Wilding, David J. Graves, Saul Surrey, and Paolo Fortina: Genotyping on a Thermal Gradient DNA Chip
Genome Res. 2003 13: 467-475. [Abstract] [Full Text] [PDF]

Pentao Liu, Nancy A. Jenkins, and Neal G. Copeland: A Highly Efficient Recombineering-Based Method for Generating Conditional Knockout Mutations
Genome Res. 2003 13: 476-484. [Abstract] [Full Text] [PDF] [Supplemental Research Data]

Philip D. Witmer, Kimberly F. Doheny, Marcia K. Adams, Corinne D. Boehm, Jane S. Dizon, Janet L. Goldstein, Tira M. Templeton, Ariana M. Wheaton, Penny N. Dong, Elizabeth W. Pugh, Robert L. Nussbaum, Kent Hunter, Jennifer A. Kelmenson, Lucy B. Rowe, and Michael J. Brownstein: The Development of a Highly Informative Mouse Simple Sequence Length Polymorphism (SSLP) Marker Set and Construction of a Mouse Family Tree Using Parsimony Analysis
Genome Res. 2003 13: 485-491. [Abstract] [Full Text] [PDF]

Koshichi Gotoh and Michio Oishi: Screening of Gene-Associated Polymorphisms by Use of In-Gel Competitive Reassociation and EST (cDNA) Array Hybridization
Genome Res. 2003 13: 492-495. [Abstract] [Full Text] [PDF]

Marina Alexandersson, Simon Cawley, and Lior Pachter: SLAM: Cross-Species Gene Finding and Alignment with a Generalized Pair Hidden Markov Model
Genome Res. 2003 13: 496-502. Published in Advance February 12, 2003, 10.1101/gr.424203 [Abstract] [Full Text] [PDF]

James Lyons-Weiler, Satish Patel, and Soumyaroop Bhattacharya: A Classification-Based Machine Learning Approach for the Analysis of Genome-Wide Expression Data
Genome Res. 2003 13: 503-512. [Abstract] [Full Text] [PDF]

Justin O. Borevitz, David Liang, David Plouffe, Hur-Song Chang, Tong Zhu, Detlef Weigel, Charles C. Berry, Elizabeth Winzeler, and Joanne Chory: Large-Scale Identification of Single-Feature Polymorphisms in Complex Genomes
Genome Res. 2003 13: 513-523. Published in Advance February 12, 2003, 10.1101/gr.541303 [Abstract] [Full Text] [PDF] [Supplemental Research Data]

RESOURCES:

Bradley J. Till, Steven H. Reynolds, Elizabeth A. Greene, Christine A. Codomo, Linda C. Enns, Jessica E. Johnson, Chris Burtner, Anthony R. Odden, Kim Young, Nicholas E. Taylor, Jorja G. Henikoff, Luca Comai, and Steven Henikoff: Large-Scale Discovery of Induced Point Mutations With High-Throughput TILLING
Genome Res. 2003 13: 524-530. [Abstract] [Full Text] [PDF]

Cover Caption:

Cover High-density oligonucleotide arrays were used to identify genomicrearrangements that result in DNA sequence differences betweenhumans and nonhuman primates. The cover depicts the hybridizationof orangutan (top left) and chimpanzee (top right) DNA to aseries of human chromosome 21 arrays. Analysis of these comparativearray data demonstrated that genomic rearrangements (insertionsand deletions ranging in size from 0.2–8.0 kb) are a significantsource of DNA variation between humans and chimpanzees, as wellas other nonhuman primates. (Cover created by Curtis R. Kautzer.[For details, see Frazer et al. pp. 341–346.])