ARTICLES:

Elliott H. Margulies, Mathieu Blanchette, NISC Comparative Sequencing Program, David Haussler, and Eric D. Green

Identification and Characterization of Multi-Species Conserved Sequences
Genome Res. 2003 13: 2507-2518. [Abstract] [Full Text]  

Melanie Babcock, Adam Pavlicek, Elizabeth Spiteri, Catherine D. Kashork, Ilya Ioshikhes, Lisa G. Shaffer, Jerzy Jurka, and Bernice E. Morrow

Shuffling of Genes Within Low-Copy Repeats on 22q11 (LCR22) by Alu-Mediated Recombination Events During Evolution
Genome Res. 2003 13: 2519-2532. [Abstract] [Full Text] [Supplemental Research Data]  

Liqing Zhang and Brandon S. Gaut

Does Recombination Shape the Distribution and Evolution of Tandemly Arrayed Genes (TAGs) in the Arabidopsis thaliana Genome?
Genome Res. 2003 13: 2533-2540. [Abstract] [Full Text]  

LETTERS:

Zhaolei Zhang, Paul M. Harrison, Yin Liu, and Mark Gerstein

Millions of Years of Evolution Preserved: A Comprehensive Catalog of the Processed Pseudogenes in the Human Genome
Genome Res. 2003 13: 2541-2558. [Abstract] [Full Text]  

David Torrents, Mikita Suyama, Evgeny Zdobnov, and Peer Bork

A Genome-Wide Survey of Human Pseudogenes
Genome Res. 2003 13: 2559-2567. [Abstract] [Full Text]  

Thomas Schlitt, Kimmo Palin, Johan Rung, Sabine Dietmann, Michael Lappe, Esko Ukkonen, and Alvis Brazma

From Gene Networks to Gene Function
Genome Res. 2003 13: 2568-2576. [Abstract] [Full Text] [Supplemental Research Data]  

Chung-Yung Chen, Keh-Ming Wu, Yo-Cheng Chang, Chuan-Hsiung Chang, Hui-Chi Tsai, Tsai-Lien Liao, Yen-Ming Liu, Hsiang-Ju Chen, Arthur Bo-Ting Shen, Jian-Chiuan Li, Teh-Li Su, Chung-Ping Shao, Chung-Te Lee, Lien-I Hor, and Shih-Feng Tsai

Comparative Genome Analysis of Vibrio vulnificus, a Marine Pathogen
Genome Res. 2003 13: 2577-2587. [Abstract] [Full Text] [Supplemental Research Data]  

Neil F. Lobo, Lucas Q. Ton, Catherine A. Hill, Christine Emore, Jeanne Romero-Severson, Greg J. Hunt, and Frank H. Collins

Genomic Analysis in the sting-2 Quantitative Trait Locus for Defensive Behavior in the Honey Bee, Apis mellifera
Genome Res. 2003 13: 2588-2593. [Abstract] [Full Text] [Supplemental Research Data]  

Elizabeth Louie, Jurg Ott, and Jacek Majewski

Nucleotide Frequency Variation Across Human Genes
Genome Res. 2003 13: 2594-2601. Published in Advance November 12, 2003, 10.1101/gr.1317703 [Abstract] [Full Text]  

Francesca Chiaromonte, Webb Miller, and Eric E. Bouhassira,

Gene Length and Proximity to Neighbors Affect Genome-Wide Expression Levels
Genome Res. 2003 13: 2602-2608. Published in Advance November 12, 2003, 10.1101/gr.1169203 [Abstract] [Full Text] [Supplemental Research Data]  

Rita Sousa-Nunes, Amer Ahmed Rana, Ross Kettleborough, Joshua M. Brickman, Melanie Clements, Alistair Forrest, Sean Grimmond, Philip Avner, James C. Smith, Sally L. Dunwoodie, and Rosa S.P. Beddington

Characterizing Embryonic Gene Expression Patterns in the Mouse Using Nonredundant Sequence-Based Selection
Genome Res. 2003 13: 2609-2620. Published in Advance November 12, 2003, 10.1101/gr.1362303 [Abstract] [Full Text] [Supplemental Research Data]  

Tao Xie, Lee Rowen, Begoña Aguado, Mary Ellen Ahearn, Anup Madan, Shizhen Qin, R. Duncan Campbell, and Leroy Hood

Analysis of the Gene-Dense Major Histocompatibility Complex Class III Region and Its Comparison to Mouse
Genome Res. 2003 13: 2621-2636. [Abstract] [Full Text] [Supplemental Research Data]  

Xiang H-F. Zhang, Katherine A. Heller, Ilana Hefter, Christina S. Leslie, and Lawrence A. Chasin

Sequence Information for the Splicing of Human Pre-mRNA Identified by Support Vector Machine Classification
Genome Res. 2003 13: 2637-2650. [Abstract] [Full Text] [Supplemental Research Data]  

Asher D. Cutter, Bret A. Payseur, Tovah Salcedo, Anne M. Estes, Jeffrey M. Good, Elizabeth Wood, Thomas Hartl, Heather Maughan, Jannine Strempel, Baomin Wang, Anthony C. Bryan, and Melissa Dellos

Molecular Correlates of Genes Exhibiting RNAi Phenotypes in Caenorhabditis elegans
Genome Res. 2003 13: 2651-2657. [Abstract] [Full Text] [Supplemental Research Data]  

Pablo D. Rabinowicz, Lance E. Palmer, Bruce P. May, Michael T. Hemann, Scott W. Lowe, W. Richard McCombie, and Robert A. Martienssen

Genes and Transposons Are Differentially Methylated in Plants, but Not in Mammals
Genome Res. 2003 13: 2658-2664. [Abstract] [Full Text] [Supplemental Research Data]  

Gila Lithwick and Hanah Margalit

Hierarchy of Sequence-Dependent Features Associated With Prokaryotic Translation
Genome Res. 2003 13: 2665-2673. [Abstract] [Full Text]  

Reiner Hoppe, Henning Frank, Heinz Breer, and Jörg Strotmann

The Clustered Olfactory Receptor Gene Family 262: Genomic Organization, Promotor Elements, and Interacting Transcription Factors
Genome Res. 2003 13: 2674-2685. [Abstract] [Full Text]  

Juan Mata and Jürg Bähler

Correlations Between Gene Expression and Gene Conservation in Fission Yeast
Genome Res. 2003 13: 2686-2690. Published in Advance November 12, 2003, 10.1101/gr.1420903 [Abstract] [Full Text]  

METHODS:

Jinhui Zhong, Huamei Zhang, Clement A. Stanyon, Gerard Tromp, and Russell L. Finley, Jr.

A Strategy for Constructing Large Protein Interaction Maps Using the Yeast Two-Hybrid System:Regulated Expression Arrays and Two-Phase Mating
Genome Res. 2003 13: 2691-2699. Published in Advance November 12, 2003, 10.1101/gr.1134603 [Abstract] [Full Text] [Supplemental Research Data]  

Erno Wienholds, Freek van Eeden, Marit Kosters, Josine Mudde, Ronald H.A. Plasterk, and Edwin Cuppen

Efficient Target-Selected Mutagenesis in Zebrafish
Genome Res. 2003 13: 2700-2707. Published in Advance November 12, 2003, 10.1101/gr.1725103 [Abstract] [Full Text] [Supplemental Research Data]  

Dong-ki Lee, Jin Woo Park, Youn-Jae Kim, Jiwon Kim, Yangsoon Lee, Jeonglim Kim, and Jin-Soo Kim

Toward a Functional Annotation of the Human Genome Using Artificial Transcription Factors
Genome Res. 2003 13: 2708-2716. [Abstract] [Full Text] [Supplemental Research Data]  

Carola Burgtorf, Pamela Kepper, Margret Hoehe, Carsten Schmitt, Richard Reinhardt, Hans Lehrach, and Sascha Sauer

Clone-Based Systematic Haplotyping (CSH): A Procedure for Physical Haplotyping of Whole Genomes
Genome Res. 2003 13: 2717-2724. [Abstract] [Full Text] [Supplemental Research Data]  

RESOURCES:

André L. Vettore, Felipe R. da Silva, Edson L. Kemper, Glaucia M. Souza, Aline M. da Silva, Maria Inês T. Ferro, Flavio Henrique-Silva, Éder A. Giglioti, Manoel V.F. Lemos, Luiz L. Coutinho, Marina P. Nobrega, Helaine Carrer, Suzelei C. França, Maurício Bacci, Jr., Maria Helena S. Goldman, Suely L. Gomes, Luiz R. Nunes, Luis E.A. Camargo, Walter J. Siqueira, Marie-Anne Van Sluys, Otavio H. Thiemann, Eiko E. Kuramae, Roberto V. Santelli, Celso L. Marino, Maria L.P.N. Targon, Jesus A. Ferro, Henrique C.S. Silveira, Danyelle C. Marini, Eliana G.M. Lemos, Claudia B. Monteiro-Vitorello, José H.M. Tambor, Dirce M. Carraro, Patrícia G. Roberto, Vanderlei G. Martins, Gustavo H. Goldman, Regina C. de Oliveira, Daniela Truffi, Carlos A. Colombo, Magdalena Rossi, Paula G. de Araujo, Susana A. Sculaccio, Aline Angella, Marleide M.A. Lima, Vicente E. de Rosa, Jr, Fábio Siviero, Virginia E. Coscrato, Marcos A. Machado, Laurent Grivet, Sonia M.Z. Di Mauro, Francisco G. Nobrega, Carlos F.M. Menck, Marilia D.V. Braga, Guilherme P. Telles, Frank A.A. Cara, Guilherme Pedrosa, João Meidanis, and Paulo Arruda

Analysis and Functional Annotation of an Expressed Sequence Tag Collection for Tropical Crop Sugarcane
Genome Res. 2003 13: 2725-2735. Published in Advance November 12, 2003, 10.1101/gr.1532103 [Abstract] [Full Text]  

Albert J. Poustka, Detlef Groth, Steffen Hennig, Sabine Thamm, Andrew Cameron, Alfred Beck, Richard Reinhardt, Ralf Herwig, Georgia Panopoulou, and Hans Lehrach

Generation, Annotation, Evolutionary Analysis, and Database Integration of 20,000 Unique Sea Urchin EST Clusters
Genome Res. 2003 13: 2736-2746. [Abstract] [Full Text] [Supplemental Research Data]  

Melody S. Clark, Yvonne J.K. Edwards, Dan Peterson, Sandra W. Clifton, Amanda J. Thompson, Masahide Sasaki, Yutaka Suzuki, Kiyoshi Kikuchi, Shugo Watabe, Koichi Kawakami, Sumio Sugano, Greg Elgar, and Stephen L. Johnson

Fugu ESTs: New Resources for Transcription Analysis and Genome Annotation
Genome Res. 2003 13: 2747-2753. Published in Advance November 12, 2003, 10.1101/gr.1691503 [Abstract] [Full Text]  

Chengwei Ren, Mi-Kyung Lee, Bo Yan, Kejiao Ding, Bettye Cox, Michael N. Romanov, Jennifer A. Price, Jerry B. Dodgson, and Hong-Bin Zhang

A BAC-Based Physical Map of the Chicken Genome
Genome Res. 2003 13: 2754-2758. [Abstract] [Full Text]  

ERRATA:

Correction for Volume 13, p. 2265
Genome Res. 2003 13: 2759. [Full Text]  

Correction for Volume 13, p. 1944
Genome Res. 2003 13: 2759. [Full Text]  

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