ARTICLES:

Tomislav Domazet-Loso and Diethard Tautz

An Evolutionary Analysis of Orphan Genes in Drosophila
Genome Res. 2003 13: 2213-2219. [Abstract] [Full Text]  

Mariano Labrador and Victor G. Corces

Extensive Exon Reshuffling Over Evolutionary Time Coupled to Trans-Splicing in Drosophila
Genome Res. 2003 13: 2220-2228. [Abstract] [Full Text] [Supplemental Research Data]  

LETTERS:

Dmitri M. Krylov, Yuri I. Wolf, Igor B. Rogozin, and Eugene V. Koonin

Gene Loss, Protein Sequence Divergence, Gene Dispensability, Expression Level, and Interactivity Are Correlated in Eukaryotic Evolution
Genome Res. 2003 13: 2229-2235. [Abstract] [Full Text]  

Alexei Fedorov, Scott Roy, Larisa Fedorova, and Walter Gilbert

Mystery of Intron Gain
Genome Res. 2003 13: 2236-2241. Published in Advance September 15, 2003, 10.1101/gr.1029803 [Abstract] [Full Text]  

Daniel Dieringer and Christian Schlötterer

Two Distinct Modes of Microsatellite Mutation Processes: Evidence From the Complete Genomic Sequences of Nine Species
Genome Res. 2003 13: 2242-2251. [Abstract] [Full Text] [Supplemental Research Data]  

Sun Shim Choi and Bruce T. Lahn

Adaptive Evolution of MRG, a Neuron-Specific Gene Family Implicated in Nociception
Genome Res. 2003 13: 2252-2259. [Abstract] [Full Text] [Supplemental Research Data]  

Araxi O. Urrutia and Laurence D. Hurst

The Signature of Selection Mediated by Expression on Human Genes
Genome Res. 2003 13: 2260-2264. Published in Advance September 15, 2003, 10.1101/gr.641103 [Abstract] [Full Text]  

Hilary F. Clark, Austin L. Gurney, Evangeline Abaya, Kevin Baker, Daryl Baldwin, Jennifer Brush, Jian Chen, Bernard Chow, Clarissa Chui, Craig Crowley, Bridget Currell, Bethanne Deuel, Patrick Dowd, Dan Eaton, Jessica Foster, Christopher Grimaldi, Qimin Gu, Philip E. Hass, Sherry Heldens, Arthur Huang, Hok Seon Kim, Laura Klimowski, Yisheng Jin, Stephanie Johnson, James Lee, Lhney Lewis, Dongzhou Liao, Melanie Mark, Edward Robbie, Celina Sanchez, Jill Schoenfeld, Somasekar Seshagiri, Laura Simmons, Jennifer Singh, Victoria Smith, Jeremy Stinson, Alicia Vagts, Richard Vandlen, Colin Watanabe, David Wieand, Kathryn Woods, Ming-Hong Xie, Daniel Yansura, Sothy Yi, Guoying Yu, Jean Yuan, Min Zhang, Zemin Zhang, Audrey Goddard, William I. Wood, and Paul Godowski

The Secreted Protein Discovery Initiative (SPDI), a Large-Scale Effort to Identify Novel Human Secreted and Transmembrane Proteins: A Bioinformatics Assessment
Genome Res. 2003 13: 2265-2270. Published in Advance September 15, 2003, 10.1101/gr.1293003 [Abstract] [Full Text] [Supplemental Research Data]  

Yun Freudenberg-Hua, Jan Freudenberg, Nadine Kluck, Sven Cichon, Peter Propping, and Markus M. Nöthen

Single Nucleotide Variation Analysis in 65 Candidate Genes for CNS Disorders in a Representative Sample of the European Population
Genome Res. 2003 13: 2271-2276. [Abstract] [Full Text] [Supplemental Research Data]  

Analabha Basu, Namita Mukherjee, Sangita Roy, Sanghamitra Sengupta, Sanat Banerjee, Madan Chakraborty, Badal Dey, Monami Roy, Bidyut Roy, Nitai P. Bhattacharyya, Susanta Roychoudhury, and Partha P. Majumder

Ethnic India: A Genomic View, With Special Reference to Peopling and Structure
Genome Res. 2003 13: 2277-2290. [Abstract] [Full Text] [Supplemental Research Data]  

Robert Lucito, John Healy, Joan Alexander, Andrew Reiner, Diane Esposito, Maoyen Chi, Linda Rodgers, Amy Brady, Jonathan Sebat, Jennifer Troge, Joseph A. West, Seth Rostan, Ken C.Q. Nguyen, Scott Powers, Kenneth Q. Ye, Adam Olshen, Ennapadam Venkatraman, Larry Norton, and Michael Wigler

Representational Oligonucleotide Microarray Analysis: A High-Resolution Method to Detect Genome Copy Number Variation
Genome Res. 2003 13: 2291-2305. Published in Advance September 15, 2003, 10.1101/gr.1349003 [Abstract] [Full Text]  

METHODS:

John Healy, Elizabeth E. Thomas, Jacob T. Schwartz, and Michael Wigler

Annotating Large Genomes With Exact Word Matches
Genome Res. 2003 13: 2306-2315. Published in Advance September 15, 2003, 10.1101/gr.1350803 [Abstract] [Full Text]  

Alec J. Jeffreys and Celia A. May

DNA Enrichment by Allele-Specific Hybridization (DEASH): A Novel Method for Haplotyping and for Detecting Low-Frequency Base Substitutional Variants and Recombinant DNA Molecules
Genome Res. 2003 13: 2316-2324. [Abstract] [Full Text]  

Gert-Jan Arts, Ellen Langemeijer, Rudi Tissingh, Libin Ma, Heidi Pavliska, Kristina Dokic, Richele Dooijes, Emir Mesic, Remko Clasen, Frits Michiels, Jan van der Schueren, Mark Lambrecht, Sofie Herman, Reginald Brys, Kim Thys, Marcel Hoffmann, Peter Tomme, and Helmuth van Es

Adenoviral Vectors Expressing siRNAs for Discovery and Validation of Gene Function
Genome Res. 2003 13: 2325-2332. Published in Advance September 15, 2003, 10.1101/gr.1332603 [Abstract] [Full Text] [Supplemental Research Data]  

Rajeev Kumar, Douglas S. Conklin, and Vivek Mittal

High-Throughput Selection of Effective RNAi Probes for Gene Silencing
Genome Res. 2003 13: 2333-2340. [Abstract] [Full Text] [Supplemental Research Data]  

Spyro Mousses, Natasha J. Caplen, Robert Cornelison, Don Weaver, Mark Basik, Sampsa Hautaniemi, Abdel G. Elkahloun, Roberto A. Lotufo, Ashish Choudary, Edward R. Dougherty, Ed Suh, and Olli Kallioniemi

RNAi Microarray Analysis in Cultured Mammalian Cells
Genome Res. 2003 13: 2341-2347. [Abstract] [Full Text] [Supplemental Research Data]  

Matthew O. Reese, R. Michae van Dam, Axel Scherer, and Stephen R. Quake

Microfabricated Fountain Pens for High-Density DNA Arrays
Genome Res. 2003 13: 2348-2352. Published in Advance September 15, 2003, 10.1101/gr.623903 [Abstract] [Full Text]  

Christian E.V. Storm and Erik L.L. Sonnhammer

Comprehensive Analysis of Orthologous Protein Domains Using the HOPS Database
Genome Res. 2003 13: 2353-2362. [Abstract] [Full Text]  

RESOURCES:

Suraj Peri, J. Daniel Navarro, Ramars Amanchy, Troels Z. Kristiansen, Chandra Kiran Jonnalagadda, Vineeth Surendranath, Vidya Niranjan, Babylakshmi Muthusamy, T.K.B. Gandhi, Mads Gronborg, Nieves Ibarrola, Nandan Deshpande, K. Shanker, H.N. Shivashankar, B.P. Rashmi, M.A. Ramya, Zhixing Zhao, K.N. Chandrika, N. Padma, H.C. Harsha, A.J. Yatish, M.P. Kavitha, Minal Menezes, Dipanwita Roy Choudhury, Shubha Suresh, Neelanjana Ghosh, R. Saravana, Sreenath Chandran, Subhalakshmi Krishna, Mary Joy, Sanjeev K. Anand, V. Madavan, Ansamma Joseph, Guang W. Wong, William P. Schiemann, Stefan N. Constantinescu, Lily Huang, Roya Khosravi-Far, Hanno Steen, Muneesh Tewari, Saghi Ghaffari, Gerard C. Blobe, Chi V. Dang, Joe G.N. Garcia, Jonathan Pevsner, Ole N. Jensen, Peter Roepstorff, Krishna S. Deshpande, Arul M. Chinnaiyan, Ada Hamosh, Aravinda Chakravarti, and Akhilesh Pandey

Development of Human Protein Reference Database as an Initial Platform for Approaching Systems Biology in Humans
Genome Res. 2003 13: 2363-2371. [Abstract] [Full Text]  

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