EDITORIAL:

Laurie Goodman

New Editors Join Genome Research
Genome Res. 2002 12: 1151. [Full Text]  

INSIGHT/OUTLOOK:

Ian Holmes

Transcendent Elements: Whole-Genome Transposon Screens and Open Evolutionary Questions
Genome Res. 2002 12: 1152-1155. [Full Text]  

L. Aravind and Lakshminarayan M. Iyer

Intraproteomic Networks: New Forays Into Predicting Interaction Partners
Genome Res. 2002 12: 1156-1158. [Full Text]  

LETTERS:

Fiona S.L. Brinkman, Jeffrey L. Blanchard, Artem Cherkasov, Yossef Av-Gay, Robert C. Brunham, Rachel C. Fernandez, B. Brett Finlay, Sarah P. Otto, B.F. Francis Ouellette, Patrick J. Keeling, Ann M. Rose, Robert E.W. Hancock, and Steven J.M. Jones

Evidence That Plant-Like Genes in Chlamydia Species Reflect an Ancestral Relationship between Chlamydiaceae, Cyanobacteria, and the Chloroplast
Genome Res. 2002 12: 1159-1167. Published in Advance July 19, 2002, 10.1101/gr.341802 [Abstract] [Full Text] [Supplemental Research Data][Supplemental Research Data]  

Richard Mott, Jörg Schultz, Peer Bork, and Chris P. Ponting

Predicting Protein Cellular Localization Using a Domain Projection Method
Genome Res. 2002 12: 1168-1174. [Abstract] [Full Text]  

Y. Ramanathan, Haibo Zhang, Virginie Aris, Patricia Soteropoulos, Stuart A. Aaronson, and Peter P. Tolias

Functional Cloning, Sorting, and Expression Profiling of Nucleic Acid-Binding Proteins
Genome Res. 2002 12: 1175-1184. [Abstract] [Full Text]  

Jun Yu, Zhiyong Yang, Miho Kibukawa, Marcia Paddock, Douglas A. Passey, and Gane Ka-Shu Wong

Minimal Introns Are Not "Junk"
Genome Res. 2002 12: 1185-1189. [Abstract] [Full Text]  

Jan Fassler, David Landsman, Asha Acharya, Jonathan R. Moll, Maria Bonovich, and Charles Vinson

B-ZIP Proteins Encoded by the Drosophila Genome: Evaluation of Potential Dimerization Partners
Genome Res. 2002 12: 1190-1200. [Abstract] [Full Text]  

Matthew Beasley, Huiling Xu, William Warren, and Michael McKay

Conserved Disruptions in the Predicted Coiled-Coil Domains of Eukaryotic SMC Complexes: Implications for Structure and Function
Genome Res. 2002 12: 1201-1209. [Abstract] [Full Text]  

Guy Oshiro, Lisa M. Wodicka, Michael P. Washburn, John R. Yates, III, David J. Lockhart, and Elizabeth A. Winzeler

Parallel Identification of New Genes in Saccharomyces cerevisiae
Genome Res. 2002 12: 1210-1220. [Abstract] [Full Text] [Supplemental Research Data]  

Yu Zheng, Joseph D. Szustakowski, Lance Fortnow, Richard J. Roberts, and Simon Kasif

Computational Identification of Operons in Microbial Genomes
Genome Res. 2002 12: 1221-1230. Published in Advance October 15, 2001, 10.1101/gr.200601 [Abstract] [Full Text]  

Juri Rappsilber, Ursula Ryder, Angus I. Lamond, and Matthias Mann

Large-Scale Proteomic Analysis of the Human Spliceosome
Genome Res. 2002 12: 1231-1245. Published in Advance July 19, 2002, 10.1101/gr.473902 [Abstract] [Full Text]  

Kerrie Nichol and and Christopher E. Pearson

CpG Methylation Modifies the Genetic Stability of Cloned Repeat Sequences
Genome Res. 2002 12: 1246-1256. Published in Advance July 19, 2002, 10.1101/gr.74502 [Abstract] [Full Text] [Supplemental Research Data][Supplemental Research Data]  

Alexander A. Bachmanov, Danielle R. Reed, Xia Li, Shanru Li, Gary K. Beauchamp, and Michael G. Tordoff

Voluntary Ethanol Consumption by Mice: Genome-Wide Analysis of Quantitative Trait Loci and Their Interactions in a C57BL/6ByJ × 129P3/J F₂ Intercross
Genome Res. 2002 12: 1257-1268. [Abstract] [Full Text] [Supplemental Research Data]  

METHODS:

Zhirong Bao and Sean R. Eddy

Automated De Novo Identification of Repeat Sequence Families in Sequenced Genomes
Genome Res. 2002 12: 1269-1276. Published in Advance July 19, 2002, 10.1101/gr.88502 [Abstract] [Full Text]  

James W. Thomas, Arjun B. Prasad, Tyrone J. Summers, Shih-Queen Lee-Lin, Valerie V.B. Maduro, Jacquelyn R. Idol, Joseph F. Ryan, Pamela J. Thomas, Jennifer C. McDowell, and Eric D. Green

Parallel Construction of Orthologous Sequence-Ready Clone Contig Maps in Multiple Species
Genome Res. 2002 12: 1277-1285. [Abstract] [Full Text]  

RESOURCES:

Hiromi Kochiwa, Ryosuke Suzuki, Takanori Washio, Rintaro Saito, The RIKEN Genome Exploration Research Group Phase, II Team, Hidemasa Bono, Piero Carninci, Yasushi Okazaki, Rika Miki, Yoshihide Hayashizaki, and Masaru Tomita

Inferring Alternative Splicing Patterns in Mouse from a Full-Length cDNA Library and Microarray Data
Genome Res. 2002 12: 1286-1293. Published in Advance July 19, 2002, 10.1101/gr.220302 [Abstract] [Full Text]  

Mark Stapleton, Guochun Liao, Peter Brokstein, Ling Hong, Piero Carninci, Toshiyuki Shiraki, Yoshihide Hayashizaki, Mark Champe, Joanne Pacleb, Ken Wan, Charles Yu, Joe Carlson, Reed George, Susan Celniker, and Gerald M. Rubin

The Drosophila Gene Collection: Identification of Putative Full-Length cDNAs for 70% of D. melanogaster Genes
Genome Res. 2002 12: 1294-1300. [Abstract] [Full Text]  

ERRATUM:

Erratum for vol. 12, p. 701
Genome Res. 2002 12: 1301. [Full Text]  

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