COMMENTARY:

Mireille Claustres, Ourania Horaitis, Marijana Vanevski, and Richard G.H. Cotton

Time for a Unified System of Mutation Description and Reporting: A Review of Locus-Specific Mutation Databases
Genome Res. 2002 12: 680-688. [Abstract] [Full Text]  

INSIGHT/OUTLOOK:

Elaine Mardis, John McPherson, Robert Martienssen, Richard K. Wilson, and W. Richard McCombie

What is Finished, and Why Does it Matter
Genome Res. 2002 12: 669-671. [Full Text]  

PERSPECTIVE:

Evan E. Eichler and Pieter J. DeJong

Biomedical Applications and Studies of Molecular Evolution: A Proposal for a Primate Genomic Library Resource
Genome Res. 2002 12: 673-678. [Abstract] [Full Text]  

ARTICLES:

Qiyu Bao, Yuqing Tian, Wei Li, Zuyuan Xu, Zhenyu Xuan, Songnian Hu, Wei Dong, Jian Yang, Yanjiong Chen, Yanfen Xue, Yi Xu, Xiaoqin Lai, Li Huang, Xiuzhu Dong, Yanhe Ma, Lunjiang Ling, Huarong Tan, Runsheng Chen, Jian Wang, Jun Yu, and Huanming Yang

A Complete Sequence of the T. tengcongensis Genome
Genome Res. 2002 12: 689-700. [Abstract] [Full Text] [Supplemental Research Data]  

Debraj GuhaThakurta, Lisanne Palomar, Gary D. Stormo, Pat Tedesco, Thomas E. Johnson, David W. Walker, Gordon Lithgow, Stuart Kim, and Christopher D. Link

Identification of a Novel cis-Regulatory Element Involved in the Heat Shock Response in Caenorhabditis elegans Using Microarray Gene Expression and Computational Methods
Genome Res. 2002 12: 701-712. [Abstract] [Full Text]  

Weimin Bi, Jiong Yan, Pawel Stankiewicz, Sung-Sup Park, Katherina Walz, Cornelius F. Boerkoel, Lorraine Potocki, Lisa G. Shaffer, Koen Devriendt, Malgorzata J.M. Nowaczyk, Ken Inoue, and James R. Lupski

Genes in a Refined Smith-Magenis Syndrome Critical Deletion Interval on Chromosome 17p11.2 and the Syntenic Region of the Mouse
Genome Res. 2002 12: 713-728. [Abstract] [Full Text]  

Sung-Sup Park, Pawel Stankiewicz, Weimin Bi, Christine Shaw, Jessica Lehoczky, Ken Dewar, Bruce Birren, and James R. Lupski

Structure and Evolution of the Smith-Magenis Syndrome Repeat Gene Clusters, SMS-REPs
Genome Res. 2002 12: 729-738. [Abstract] [Full Text]  

LETTERS:

Mathieu Blanchette and Martin Tompa

Discovery of Regulatory Elements by a Computational Method for Phylogenetic Footprinting
Genome Res. 2002 12: 739-748. [Abstract] [Full Text]  

Berthold Göttgens, Linda M. Barton, Michael A. Chapman, Angus M. Sinclair, Bjarne Knudsen, Darren Grafham, James G.R. Gilbert, Jane Rogers, David R. Bentley, and Anthony R. Green

Transcriptional Regulation of the Stem Cell Leukemia Gene (SCL) Comparative Analysis of Five Vertebrate SCL Loci
Genome Res. 2002 12: 749-759. [Abstract] [Full Text]  

Nathan D. Price, Jason A. Papin, and Bernhard Ø. Palsson

Determination of Redundancy and Systems Properties of the Metabolic Network of Helicobacter pylori Using Genome-Scale Extreme Pathway Analysis
Genome Res. 2002 12: 760-769. Published in Advance April 12, 2002, 10.1101/gr.218002. Article published online before print in April 2002 [Abstract] [Full Text]  

Andrew Mounsey, Petra Bauer, and Ian A. Hope

Evidence Suggesting That a Fifth of Annotated Caenorhabditis elegans Genes May Be Pseudogenes
Genome Res. 2002 12: 770-775. Published in Advance April 12, 2002, 10.1101/gr208802. Article published online before print in April 2002 [Abstract] [Full Text]  

Sarah F. Smith, Philip Snell, Frank Gruetzner, Anthony J. Bench, Thomas Haaf, Judith A. Metcalfe, Anthony R. Green, and Greg Elgar

Analyses of the Extent of Shared Synteny and Conserved Gene Orders between the Genome of Fugu rubripes and Human 20q
Genome Res. 2002 12: 776-784. Published in Advance April 12, 2002, 10.1101/gr.221802. Article published online before print in April 2002 [Abstract] [Full Text]  

Hanqing Xie, Alon Wasserman, Zurit Levine, Amit Novik, Vladimir Grebinskiy, Avi Shoshan, and Liat Mintz

Large-Scale Protein Annotation through Gene Ontology
Genome Res. 2002 12: 785-794. [Abstract] [Full Text]  

Daniel G. Peterson, Stefan R. Schulze, Erica B. Sciara, Scott A. Lee, John E. Bowers, Alexander Nagel, Ning Jiang, Deanne C. Tibbitts, Susan R. Wessler, and Andrew H. Paterson

Integration of Cot Analysis, DNA Cloning, and High-Throughput Sequencing Facilitates Genome Characterization and Gene Discovery
Genome Res. 2002 12: 795-807. Published in Advance April 12, 2002, 10.1101/gr.226102 [Abstract] [Full Text] [Supplemental Research Data]  

Hiroyuki Ogata, Stéphane Audic, Chantal Abergel, Pierre-Edouard Fournier, and Jean-Michel Claverie

Protein Coding Palindromes Are a Unique but Recurrent Feature in Rickettsia
Genome Res. 2002 12: 808-816. Published in Advance April 12, 2002, 10.1101/gr.227602 [Abstract] [Full Text]  

Qiang Zhao, Yu Zhang, Zhukuan Cheng, Mingsheng Chen, Shengyue Wang, Qi Feng, Yucheng Huang, Ying Li, Yesheng Tang, Bo Zhou, Zhehua Chen, Shuliang Yu, Jingjie Zhu, Xin Hu, Jie Mu, Kai Ying, Pei Hao, Lei Zhang, Yiqi Lu, Lei S. Zhang, Yilei Liu, Zhen Yu, Danlin Fan, Qijun Weng, Ling Chen, Tingting Lu, Xiaohui Liu, Peixin Jia, Tongguo Sun, Yongrui Wu, Yujun Zhang, Ying Lu, Can Li, Rong Wang, Haiyan Lei, Tao Li, Hao Hu, Mei Wu, Runquan Zhang, Jianping Guan, Jia Zhu, Gang Fu, Minghong Gu, Guofan Hong, Yongbiao Xue, Rod Wing, Jiming Jiang, and Bin Han

A Fine Physical Map of the Rice Chromosome 4
Genome Res. 2002 12: 817-823. [Abstract] [Full Text]  

METHODS:

Jun Wang, Gane Ka-Shu Wong, Peixiang Ni, Yujun Han, Xiangang Huang, Jianguo Zhang, Chen Ye, Yong Zhang, Jianfei Hu, Kunlin Zhang, Xin Xu, Lijuan Cong, Hong Lu, Xide Ren, Xiaoyu Ren, Jun He, Lin Tao, Douglas A. Passey, Jian Wang, Huanming Yang, Jun Yu, and Songgang Li

RePS: A Sequence Assembler That Masks Exact Repeats Identified from the Shotgun Data
Genome Res. 2002 12: 824-831. [Abstract] [Full Text]  

Gabriela G. Loots, Ivan Ovcharenko, Lior Pachter, Inna Dubchak, and Edward M. Rubin

rVista for Comparative Sequence-Based Discovery of Functional Transcription Factor Binding Sites
Genome Res. 2002 12: 832-839. Published in Advance April 12, 2002, 10.1101/gr.225502. Article published online before print in April 2002 [Abstract] [Full Text]  

ERRATUM:

Erratum for vol. 12, p. 584
Genome Res. 2002 12: 840. [Full Text]  

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