Genome Research -- Table of Contents (12 [10])

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Volume 12, Issue 10: October 2002 [Index by Author] [Cover Caption]

Other Issues:

REVIEW

ARTICLES

LETTERS

METHODS

RESOURCES

ERRATUM

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REVIEW:

Prescott L. Deininger and Mark A. Batzer: Mammalian Retroelements
Genome Res. 2002 12: 1455-1465. [Abstract] [Full Text]

ARTICLES:

Zhaolei Zhang, Paul Harrison, and Mark Gerstein: Identification and Analysis of Over 2000 Ribosomal Protein Pseudogenes in the Human Genome
Genome Res. 2002 12: 1466-1482. [Abstract] [Full Text]

LETTERS:

Patrik Medstrand, Louie N. van de Lagemaat, and Dixie L. Mager: Retroelement Distributions in the Human Genome: Variations Associated With Age and Proximity to Genes
Genome Res. 2002 12: 1483-1495. [Abstract] [Full Text]

Brad A. Freking, Susan K. Murphy, Andrew A. Wylie, Simon J. Rhodes, John W. Keele, Kreg A. Leymaster, Randy L. Jirtle, and Timothy P.L. Smith: Identification of the Single Base Change Causing the Callipyge Muscle Hypertrophy Phenotype, the Only Known Example of Polar Overdominance in Mammals
Genome Res. 2002 12: 1496-1506. Published in Advance September 13, 2002, 10.1101/gr.571002 [Abstract] [Full Text]

Dmitry A. Rodionov, Andrei A. Mironov, and Mikhail S. Gelfand: Conservation of the Biotin Regulon and the BirA Regulatory Signal in Eubacteria and Archaea
Genome Res. 2002 12: 1507-1516. [Abstract] [Full Text]

H. Garrett R. Thompson, Joseph W. Harris, Barbara J. Wold, Stephen R. Quake, and James P. Brody: Identification and Confirmation of a Module of Coexpressed Genes
Genome Res. 2002 12: 1517-1522. [Abstract] [Full Text]

Lee Ann McCue, William Thompson, C. Steven Carmack, and Charles E. Lawrence: Factors Influencing the Identification of Transcription Factor Binding Sites by Cross-Species Comparison
Genome Res. 2002 12: 1523-1532. Published in Advance September 13, 2002, 10.1101/gr.323602 [Abstract] [Full Text] [Supplemental Research Data]

José E. Pérez-Ortín, Amparo Querol, Sergi Puig, and Eladio Barrio: Molecular Characterization of a Chromosomal Rearrangement Involved in the Adaptive Evolution of Yeast Strains
Genome Res. 2002 12: 1533-1539. [Abstract] [Full Text]

Minghua Deng, Shipra Mehta, Fengzhu Sun, and Ting Chen: Inferring Domain-Domain Interactions From Protein-Protein Interactions
Genome Res. 2002 12: 1540-1548. [Abstract] [Full Text] [Supplemental Research Data]

Rentao Song, Victor Llaca, and Joachim Messing: Mosaic Organization of Orthologous Sequences in Grass Genomes
Genome Res. 2002 12: 1549-1555. Published in Advance September 13, 2002, 10.1101/gr.268302 [Abstract] [Full Text]

Anamitra Bhattacharyya, Stephanie Stilwagen, Gary Reznik, Helene Feil, William S. Feil, Iain Anderson, Axel Bernal, Mark D'Souza, Natalia Ivanova, Vinayak Kapatral, Niels Larsen, Tamara Los, Athanasios Lykidis, Eugene Selkov, Jr., Theresa L. Walunas, Alexander Purcell, Rob A. Edwards, Trevor Hawkins, Robert Haselkorn, Ross Overbeek, Nikos C. Kyrpides, and Paul F. Predki: Draft Sequencing and Comparative Genomics of Xylella fastidiosa Strains Reveal Novel Biological Insights
Genome Res. 2002 12: 1556-1563. Published in Advance September 13, 2002, 10.1101/gr.370702 [Abstract] [Full Text]

METHODS:

Margaret Werner-Washburne, Brian Wylie, Kevin Boyack, Edwina Fuge, Judith Galbraith, Jose Weber, and George Davidson: Comparative Analysis of Multiple Genome-Scale Data Sets
Genome Res. 2002 12: 1564-1573. [Abstract] [Full Text] [Supplemental Research Data]

Francis D. Gibbons and Frederick P. Roth: Judging the Quality of Gene Expression-Based Clustering Methods Using Gene Annotation
Genome Res. 2002 12: 1574-1581. [Abstract] [Full Text]

Soumya Raychaudhuri, Hinrich Schütze, and Russ B. Altman: Using Text Analysis to Identify Functionally Coherent Gene Groups
Genome Res. 2002 12: 1582-1590. [Abstract] [Full Text]

RESOURCES:

Zunyan Dai, Dieter Weichenhan, Yue-Zhong Wu, Julia L Hall, Laura J. Rush, Laura T. Smith, Aparna Raval, Li Yu, Daniela Kroll, Joerg Muehlisch, Michael C. Frühwald, Pieter de Jong, Joe Catanese, Ramana V. Davuluri, Dominic J. Smiraglia, and Christoph Plass: An AscI Boundary Library for the Studies of Genetic and Epigenetic Alterations in CpG Islands
Genome Res. 2002 12: 1591-1598. [Abstract] [Full Text] [Supplemental Research Data]

Lincoln D. Stein, Christopher Mungall, ShengQiang Shu, Michael Caudy, Marco Mangone, Allen Day, Elizabeth Nickerson, Jason E. Stajich, Todd W. Harris, Adrian Arva, and Suzanna Lewis: The Generic Genome Browser: A Building Block for a Model Organism System Database
Genome Res. 2002 12: 1599-1610. [Abstract] [Full Text]

Jason E. Stajich, David Block, Kris Boulez, Steven E. Brenner, Stephen A. Chervitz, Chris Dagdigian, Georg Fuellen, James G.R. Gilbert, Ian Korf, Hilmar Lapp, Heikki Lehväslaiho, Chad Matsalla, Chris J. Mungall, Brian I. Osborne, Matthew R. Pocock, Peter Schattner, Martin Senger, Lincoln D. Stein, Elia Stupka, Mark D. Wilkinson, and Ewan Birney: The Bioperl Toolkit: Perl Modules for the Life Sciences
Genome Res. 2002 12: 1611-1618. [Abstract] [Full Text] [Supplemental Research Data]

Lewis Y. Geer, Michael Domrachev, David J. Lipman, and Stephen H. Bryant: CDART: Protein Homology by Domain Architecture
Genome Res. 2002 12: 1619-1623. [Abstract] [Full Text]

ERRATUM:

: Erratum for vol. 12, p. 1159
Genome Res. 2002 12: 1624. [Full Text]

Cover Caption:

Cover

The finding that a single A to G mutation causes this unique parent-of-origin dependent muscular hypertrophy in sheep is celebratedin an appliqué quilt entitled "The Gift," by Nancy M. Jirtle,a Durham, NC, fiber artist and editor of the online magazine Cyberfibres.The Greek goddess of love, Aphrodite Kallipygos (Kalli- beautiful;-pygos buttocks), is shown giving sheep a mutated callipyge genewhich was named for her. Of four possible inheritance patterns,only the animal with an enlarged bottom (made with authentic callipygewool) inherits the mutated callipyge gene from its father anda normal copy from its mother (CN). (Photograph by Eric W. Larson,RBP, and Lewis A. Parrish, RBP. [For details, see Freking et al.,pp. 1496-1506.])