COMMENTARY:

Xun Gu and Wei Huang

Testing the Parsimony Test of Genome Duplications: A Counterexample
Genome Res. 2002 12: 1-2. [Full Text]  

REPORTS:

Udaya DeSilva, Laura Elnitski, Jacquelyn R. Idol, Johannah L. Doyle, Weiniu Gan, James W. Thomas, Scott Schwartz, Nicole L. Dietrich, Stephen M. Beckstrom-Sternberg, Jennifer C. McDowell, Robert W. Blakesley, Gerard G. Bouffard, Pamela J. Thomas, Jeffrey W. Touchman, Webb Miller, and Eric D. Green

Generation and Comparative Analysis of ~3.3 Mb of Mouse Genomic Sequence Orthologous to the Region of Human Chromosome 7q11.23 Implicated in Williams Syndrome
Genome Res. 2002 12: 3-15. [Abstract] [Full Text]  

ARTICLES:

Berend Snel, Peer Bork, and Martijn A. Huynen

Genomes in Flux: The Evolution of Archaeal and Proteobacterial Gene Content
Genome Res. 2002 12: 17-25. Published in Advance December 14, 2001, 10.1101/gr.176501 [Abstract] [Full Text]  

LETTERS:

Guillaume Bourque and Pavel A. Pevzner

Genome-Scale Evolution: Reconstructing Gene Orders in the Ancestral Species
Genome Res. 2002 12: 26-36. [Abstract] [Full Text]  

Ronald Jansen, Dov Greenbaum, and Mark Gerstein

Relating Whole-Genome Expression Data with Protein-Protein Interactions
Genome Res. 2002 12: 37-46. [Abstract] [Full Text]  

Tobias Doerks, Richard R. Copley, Jörg Schultz, Chris P. Ponting, and Peer Bork

Systematic Identification of Novel Protein Domain Families Associated with Nuclear Functions
Genome Res. 2002 12: 47-56. [Abstract] [Full Text]  

Viacheslav N. Bolshakov, Pantelis Topalis, Claudia Blass, Elena Kokoza, Alessandra della Torre, Fotis C. Kafatos, and Christos Louis

A Comparative Genomic Analysis of Two Distant Diptera, the Fruit Fly, Drosophila melanogaster, and the Malaria Mosquito, Anopheles gambiae
Genome Res. 2002 12: 57-66. [Abstract] [Full Text]  

Moira Crosier, Luigi Viggiano, Jane Guy, Doriana Misceo, Robert Stones, Wenbin Wei, Tom Hearn, Mario Ventura, Nicoletta Archidiacono, Mariano Rocchi, and Michael S. Jackson

Human Paralogs of KIAA0187 Were Created through Independent Pericentromeric-Directed and Chromosome-Specific Duplication Mechanisms
Genome Res. 2002 12: 67-80. [Abstract] [Full Text]  

Robert P. Lane, Jared C. Roach, Inyoul Y. Lee, Cecilie Boysen, Arian Smit, Barbara J. Trask, and Leroy Hood

Genomic Analysis of the Olfactory Receptor Region of the Mouse and Human T-Cell Receptor / Loci
Genome Res. 2002 12: 81-87. [Abstract] [Full Text]  

Karen A. Silverman, Revati Koratkar, Linda D. Siracusa, and Arthur M. Buchberg

Identification of the Modifier of Min 2 (Mom2) Locus, a New Mutation That Influences Apc-Induced Intestinal Neoplasia
Genome Res. 2002 12: 88-97. [Abstract] [Full Text]  

Reinhard Hoffmann, Thomas Seidl, Martin Neeb, Antonius Rolink, and Fritz Melchers

Changes in Gene Expression Profiles in Developing B Cells of Murine Bone Marrow
Genome Res. 2002 12: 98-111. [Abstract] [Full Text] [Supplemental Research Data]  

Emily N. Manderson, Anne-Marie Mes-Masson, Jaroslav Novak, Peter D. Lee, Diane Provencher, Thomas J. Hudson, and Patricia N. Tonin

Expression Profiles of 290 ESTs Mapped to Chromosome 3 in Human Epithelial Ovarian Cancer Cell Lines Using DNA Expression Oligonucleotide Microarrays
Genome Res. 2002 12: 112-121. [Abstract] [Full Text]  

David A. Wright and Daniel F. Voytas

Athila4 of Arabidopsis and Calypso of Soybean Define a Lineage of Endogenous Plant Retroviruses
Genome Res. 2002 12: 122-131. Published in Advance December 14, 2001, 10.1101/gr.196001 [Abstract] [Full Text]  

Catherine Cloix, Sylvie Tutois, Yasushi Yukawa, Olivier Mathieu, Claudine Cuvillier, Marie-Claude Espagnol, Georges Picard, and Sylvette Tourmente

Analysis of the 5S RNA Pool in Arabidopsis thaliana: RNAs Are Heterogeneous and Only Two of the Genomic 5S Loci Produce Mature 5S RNA
Genome Res. 2002 12: 132-144. Published in Advance December 14, 2001, 10.1101/gr.181301 [Abstract] [Full Text]  

METHODS:

R. Michael van Dam and Stephen R. Quake

Gene Expression Analysis with Universal n-mer Arrays
Genome Res. 2002 12: 145-152. [Abstract] [Full Text]  

Oliver Galm, Michael R. Rountree, Kurtis E. Bachman, Kam-Wing Jair, Stephen B. Baylin, and James G. Herman

Enzymatic Regional Methylation Assay: A Novel Method to Quantify Regional CpG Methylation Density
Genome Res. 2002 12: 153-157. Published in Advance December 14, 2001, 10.1101/gr.202501 [Abstract] [Full Text]  

Raad S. Gitan, Huidong Shi, Chuan-Mu Chen, Pearlly S. Yan, and Tim Hui-Ming Huang

Methylation-Specific Oligonucleotide Microarray: A New Potential for High-Throughput Methylation Analysis
Genome Res. 2002 12: 158-164. Published in Advance December 14, 2001, 10.1101/gr.202801 [Abstract] [Full Text]  

Joachim Theilhaber, Timothy Connolly, Sergio Roman-Roman, Steven Bushnell, Amanda Jackson, Kathy Call, Teresa Garcia, and Roland Baron

Finding Genes in the C2C12 Osteogenic Pathway by k-Nearest-Neighbor Classification of Expression Data
Genome Res. 2002 12: 165-176. [Abstract] [Full Text] [Supplemental Research Data]  

Serafim Batzoglou, David B. Jaffe, Ken Stanley, Jonathan Butler, Sante Gnerre, Evan Mauceli, Bonnie Berger, Jill P. Mesirov, and Eric S. Lander

ARACHNE: A Whole-Genome Shotgun Assembler
Genome Res. 2002 12: 177-189. [Abstract] [Full Text]  

Christopher K. Raymond, Elizabeth H. Sims, and Maynard V. Olson

Linker-Mediated Recombinational Subcloning of Large DNA Fragments Using Yeast
Genome Res. 2002 12: 190-197. [Abstract] [Full Text]  

Anton Nekrutenko, Kateryna D. Makova, and Wen-Hsiung Li

The K_A/K_S Ratio Test for Assessing the Protein-Coding Potential of Genomic Regions: An Empirical and Simulation Study
Genome Res. 2002 12: 198-202. Published in Advance December 14, 2001, 10.1101/gr.200901 [Abstract] [Full Text]  

Soumya Raychaudhuri, Jeffrey T. Chang, Patrick D. Sutphin, and Russ B. Altman

Associating Genes with Gene Ontology Codes Using a Maximum Entropy Analysis of Biomedical Literature
Genome Res. 2002 12: 203-214. [Abstract] [Full Text]  

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