INSIGHT/OUTLOOK:

Martin Tompa

Identifying Functional Elements by Comparative DNA Sequence Analysis
Genome Res. 2001 11: 1143-1144. [Full Text]  

Dong Kyung Chang, David Metzgar, Christopher Wills, and C. Richard Boland

Microsatellites in the Eukaryotic DNA Mismatch Repair Genes as Modulators of Evolutionary Mutation Rate
Genome Res. 2001 11: 1145-1146. [Full Text]  

Paul J. Planet, Rob DeSalle, Mark Siddall, Timothy Bael, Indra Neil Sarkar, and Scott E. Stanley

Systematic Analysis of DNA Microarray Data: Ordering and Interpreting Patterns of Gene Expression
Genome Res. 2001 11: 1149-1155. [Full Text]  

REVIEW:

Michael Dean, Andrey Rzhetsky, and Rando Allikmets

The Human ATP-Binding Cassette (ABC) Transporter Superfamily
Genome Res. 2001 11: 1156-1166. Published in Advance January 18, 2001, 10.1101/gr.GR-1649R [Abstract] [Full Text]  

REPORTS:

Klaus Mayer, George Murphy, Renato Tarchini, Rolf Wambutt, Guido Volckaert, Thomas Pohl, Andreas Düsterhöft, Willem Stiekema, Karl-Dieter Entian, Nancy Terryn, Kai Lemcke, Dirk Haase, Caroline R. Hall, Anne-Marie van Dodeweerd, Scott V. Tingey, Hans-Werner Mewes, Michael W. Bevan, and Ian Bancroft

Conservation of Microstructure between a Sequenced Region of the Genome of Rice and Multiple Segments of the Genome of Arabidopsis thaliana
Genome Res. 2001 11: 1167-1174. Published in Advance June 12, 2001, 10.1101/gr.GR-1617R [Abstract] [Full Text]  

ARTICLES:

Paul F. Cliften, LaDeana W. Hillier, Lucinda Fulton, Tina Graves, Tracie Miner, Warren R. Gish, Robert H. Waterston, and Mark Johnston

Surveying Saccharomyces Genomes to Identify Functional Elements by Comparative DNA Sequence Analysis
Genome Res. 2001 11: 1175-1186. [Abstract] [Full Text]  

Harmit S. Malik and Thomas H. Eickbush

Phylogenetic Analysis of Ribonuclease H Domains Suggests a Late, Chimeric Origin of LTR Retrotransposable Elements and Retroviruses
Genome Res. 2001 11: 1187-1197. [Abstract] [Full Text]  

LETTERS:

Jacques Corbeil, Dennis Sheeter, Davide Genini, Steffney Rought, Lorenzo Leoni, Pinyi Du, Mark Ferguson, Daniel R. Masys, John B. Welsh, J. Lynn Fink, Roman Sasik, David Huang, Jorg Drenkow, Douglas D. Richman, and Thomas Gingeras

Temporal Gene Regulation During HIV-1 Infection of Human CD4⁺ T Cells
Genome Res. 2001 11: 1198-1204. Published in Advance June 12, 2001, 10.1101/gr.GR-1802R [Abstract] [Full Text]  

Pawel Stankiewicz, Sung-Sup Park, Ken Inoue, and James R. Lupski

The Evolutionary Chromosome Translocation 4;19 in Gorilla gorilla is Associated with Microduplication of the Chromosome Fragment Syntenic to Sequences Surrounding the Human Proximal CMT1A-REP
Genome Res. 2001 11: 1205-1210. [Abstract] [Full Text]  

S. Johannes R. Rajarao, Victor A. Canfield, Manzoor-Ali P.K. Mohideen, Yi-Lin Yan, John H. Postlethwait, Keith C. Cheng, and Robert Levenson

The Repertoire of Na,K-ATPase and Subunit Genes Expressed in the Zebrafish, Danio rerio
Genome Res. 2001 11: 1211-1220. [Abstract] [Full Text] [Supplemental Research Data]  

Karen L. Mohlke, Ethan M. Lange, Timo T. Valle, Soumitra Ghosh, Victoria L. Magnuson, Kaisa Silander, Richard M. Watanabe, Peter S. Chines, Richard N. Bergman, Jaakko Tuomilehto, Francis S. Collins, and Michael Boehnke

Linkage Disequilibrium Between Microsatellite Markers Extends Beyond 1 cM on Chromosome 20 in Finns
Genome Res. 2001 11: 1221-1226. [Abstract] [Full Text]  

METHODS:

Jeffrey G. Thomas, James M. Olson, Stephen J. Tapscott, and Lue Ping Zhao

An Efficient and Robust Statistical Modeling Approach to Discover Differentially Expressed Genes Using Genomic Expression Profiles
Genome Res. 2001 11: 1227-1236. [Abstract] [Full Text]  

Gang Ken Hu, Steven J Madore, Brian Moldover, Tim Jatkoe, David Balaban, Jeffrey Thomas, and Yixin Wang

Predicting Splice Variant from DNA Chip Expression Data
Genome Res. 2001 11: 1237-1245. [Abstract] [Full Text]  

Barry R. Bochner, Peter Gadzinski, and Eugenia Panomitros

Phenotype MicroArrays for High-Throughput Phenotypic Testing and Assay of Gene Function
Genome Res. 2001 11: 1246-1255. [Abstract] [Full Text]  

Patrick P. Zarrinkar, James K. Mainquist, Matthew Zamora, David Stern, John B. Welsh, Lisa M. Sapinoso, Garret M. Hampton, and David J. Lockhart

Arrays of Arrays for High-Throughput Gene Expression Profiling
Genome Res. 2001 11: 1256-1261. Published in Advance June 12, 2001, 10.1101/gr.GR-1748R [Abstract] [Full Text]  

Koustubh Ranade, Mau-Song Chang, Chih-Tai Ting, Dee Pei, Chin-Fu Hsiao, Michael Olivier, Robert Pesich, Joan Hebert, Yii-Der I. Chen, Victor J. Dzau, David Curb, Richard Olshen, Neil Risch, David R. Cox, and David Botstein

High-Throughput Genotyping with Single Nucleotide Polymorphisms
Genome Res. 2001 11: 1262-1268. Published in Advance June 12, 2001, 10.1101/gr.GR-1578R [Abstract] [Full Text] [Supplemental Research Data]  

Christopher J. Elkin, Paul M. Richardson, H. Matthew Fourcade, Nancy M. Hammon, Martin J. Pollard, Paul F. Predki, Tijana Glavina, and Trevor L. Hawkins

High-Throughput Plasmid Purification for Capillary Sequencing
Genome Res. 2001 11: 1269-1274. [Abstract] [Full Text]  

RESOURCES:

Jillian F. Maddox, Kizanne P. Davies, Allan M. Crawford, Dennis J. Hulme, Daniel Vaiman, Edmond P. Cribiu, Bradley A. Freking, Ken J. Beh, Noelle E. Cockett, Nina Kang, Christopher D. Riffkin, Roger Drinkwater, Stephen S. Moore, Ken G. Dodds, Joanne M. Lumsden, Tracey C. van Stijn, Sin H. Phua, David L. Adelson, Heather R. Burkin, Judith E. Broom, Johannes Buitkamp, Lisa Cambridge, William T. Cushwa, Emily Gerard, Susan M. Galloway, Blair Harrison, Rachel J. Hawken, Stefan Hiendleder, Hannah M. Henry, Juan F. Medrano, Korena A. Paterson, Laurent Schibler, Roger T. Stone, and Beryl van Hest

An Enhanced Linkage Map of the Sheep Genome Comprising More Than 1000 Loci
Genome Res. 2001 11: 1275-1289. Published in Advance June 12, 2001, 10.1101/gr.GR-1350R [Abstract] [Full Text]  

William J. Tapper, Newton E. Morton, Ian Dunham, Xiayi Ke, and Andrew Collins

A Sequence-Based Integrated Map of Chromosome 22
Genome Res. 2001 11: 1290-1295. [Abstract] [Full Text]  

Alexandra Louis, Emmanuelle Ollivier, Jean-Christophe Aude, and Jean-Loup Risler

Massive Sequence Comparisons as a Help in Annotating Genomic Sequences
Genome Res. 2001 11: 1296-1303. Published in Advance June 12, 2001, 10.1101/gr.GR-1776R [Abstract] [Full Text]  

Jin-Long Li, Hongyi Deng, Dong-Bing Lai, Fuhua Xu, Jian Chen, Guimin Gao, Robert R. Recker, and Hong-Wen Deng

Toward High-Throughput Genotyping: Dynamic and Automatic Software for Manipulating Large-Scale Genotype Data Using Fluorescently Labeled Dinucleotide Markers
Genome Res. 2001 11: 1304-1314. [Abstract] [Full Text]  

Errata:

Errata for vol. 11, p. 645
Genome Res. 2001 11: 1315. [Full Text]  

Errata for vol. 11, p. 667
Genome Res. 2001 11: 1315. [Full Text]  

Errata for vol. 11, p. 677
Genome Res. 2001 11: 1315. [Full Text]  

Errata for vol. 11, p. 817
Genome Res. 2001 11: 1315. [Full Text]  

Errata for vol. 11, p. 901
Genome Res. 2001 11: 1315. [Full Text]  

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