EDITORIAL:

Laurie Goodman

Unlimited AccessLimitless Success
Genome Res. 2001 11: 637-638. [Full Text]  

COMMENTARY:

Francis S. Collins

Contemplating the End of the Beginning
Genome Res. 2001 11: 641-643. [Full Text]  

Eric D. Green and Aravinda Chakravarti

The Human Genome Sequence Expedition: Views from the "Base Camp"
Genome Res. 2001 11: 645-651. [Full Text]  

Evan E. Eichler

Segmental Duplications: What's Missing, Misassigned, and Misassembledand Should We Care?
Genome Res. 2001 11: 653-656. [Full Text]  

Ellen Wright Clayton

Through the Lens of the Sequence
Genome Res. 2001 11: 659-664. [Full Text]  

INSIGHT/OUTLOOK:

Wojciech Makalowski

Are We Polyploids? A Brief History of One Hypothesis
Genome Res. 2001 11: 667-670. [Full Text]  

Oscar P. Kuipers

Complete DNA Sequence of Lactococcus lactis Adds Flavor to Genomics
Genome Res. 2001 11: 673-674. [Full Text]  

REPORTS:

Yutaka Suzuki, Tatsuhiko Tsunoda, Jun Sese, Hirotoshi Taira, Junko Mizushima-Sugano, Hiroko Hata, Toshio Ota, Takao Isogai, Toshihiro Tanaka, Yusuke Nakamura, Akira Suyama, Yoshiyuki Sakaki, Shinichi Morishita, Kousaku Okubo, and Sumio Sugano

Identification and Characterization of the Potential Promoter Regions of 1031 Kinds of Human Genes
Genome Res. 2001 11: 677-684. Published in Advance April 11, 2001, 10.1101/gr.GR-1640R [Abstract] [Full Text]  

ARTICLES:

Gustavo Glusman, Itai Yanai, Irit Rubin, and Doron Lancet

The Complete Human Olfactory Subgenome
Genome Res. 2001 11: 685-702. [Abstract] [Full Text]  

Russell Schwartz, Claire S. Ting, and Jonathan King

Whole Proteome pI Values Correlate with Subcellular Localizations of Proteins for Organisms within the Three Domains of Life
Genome Res. 2001 11: 703-709. Published in Advance April 11, 2001, 10.1101/gr.GR-1587R [Abstract] [Full Text]  

LETTERS:

Panayiotis V. Benos, Melanie K. Gatt, Lee Murphy, David Harris, Bart Barrell, Concepcion Ferraz, Sophie Vidal, Christine Brun, Jacques Demaille, Edouard Cadieu, Stephane Dreano, Stéphanie Gloux, Valerie Lelaure, Stephanie Mottier, Francis Galibert, Dana Borkova, Belen Miñana, Fotis C. Kafatos, Slava Bolshakov, Inga Sidén-Kiamos, George Papagiannakis, Lefteris Spanos, Christos Louis, Encarnación Madueño, Beatriz de Pablos, Juan Modolell, Annette Peter, Petra Schöttler, Meike Werner, Fotini Mourkioti, Nicole Beinert, Gordon Dowe, Ulrich Schäfer, Herbert Jäckle, Alain Bucheton, Debbie Callister, Lorna Campbell, Nadine S. Henderson, Paul J. McMillan, Cathy Salles, Evelyn Tait, Phillipe Valenti, Robert D.C. Saunders, Alain Billaud, Lior Pachter, David M. Glover, and Michael Ashburner

From First Base: The Sequence of the Tip of the X Chromosome of Drosophila melanogaster, a Comparison of Two Sequencing Strategies
Genome Res. 2001 11: 710-730. [Abstract] [Full Text]  

Alexander Bolotin, Patrick Wincker, Stéphane Mauger, Olivier Jaillon, Karine Malarme, Jean Weissenbach, S. Dusko Ehrlich, and Alexei Sorokin

The Complete Genome Sequence of the Lactic Acid Bacterium Lactococcus lactis ssp. lactis IL1403
Genome Res. 2001 11: 731-753. Published in Advance April 11, 2001, 10.1101/gr.GR-1697R [Abstract] [Full Text]  

Valérie Ledent and Michel Vervoort

The Basic Helix-Loop-Helix Protein Family: Comparative Genomics and Phylogenetic Analysis
Genome Res. 2001 11: 754-770. [Abstract] [Full Text]  

Austin L. Hughes, Jack da Silva, and Robert Friedman

Ancient Genome Duplications Did Not Structure the Human Hox-Bearing Chromosomes
Genome Res. 2001 11: 771-780. Published in Advance April 11, 2001, 10.1101/gr.GR-1600R [Abstract] [Full Text]  

Marc Robinson-Rechavi, Oriane Marchand, Héctor Escriva, Pierre-Luc Bardet, Dominique Zelus, Sandrine Hughes, and Vincent Laudet

Euteleost Fish Genomes are Characterized by Expansion of Gene Families
Genome Res. 2001 11: 781-788. [Abstract] [Full Text]  

Takashi Shiina, Asako Ando, Yumiko Suto, Fumio Kasai, Atsuko Shigenari, Nobusada Takishima, Eri Kikkawa, Kyoko Iwata, Yuko Kuwano, Yuka Kitamura, Yumiko Matsuzawa, Kazumi Sano, Masahiro Nogami, Hisako Kawata, Suyun Li, Yasuhito Fukuzumi, Masaaki Yamazaki, Hiroyuki Tashiro, Gen Tamiya, Atsushi Kohda, Katsuzumi Okumura, Toshimichi Ikemura, Eiichi Soeda, Nobuhisa Mizuki, Minoru Kimura, Seiamak Bahram, and Hidetoshi Inoko

Genomic Anatomy of a Premier Major Histocompatibility Complex Paralogous Region on Chromosome 1q21-q22
Genome Res. 2001 11: 789-802. [Abstract] [Full Text]  

Ru-Fang Yeh, Lee P. Lim, and Christopher B. Burge

Computational Inference of Homologous Gene Structures in the Human Genome
Genome Res. 2001 11: 803-816. [Abstract] [Full Text]  

Sanja Rogic, Alan K. Mackworth, and Francis B.F. Ouellette

Evaluation of Gene-Finding Programs on Mammalian Sequences
Genome Res. 2001 11: 817-832. [Abstract] [Full Text]  

Tatyana B. Nesterova, Sergey Ya. Slobodyanyuk, Eugene A. Elisaphenko, Alexander I. Shevchenko, Colette Johnston, Marina E. Pavlova, Igor B. Rogozin, Nikolay N. Kolesnikov, Neil Brockdorff, and Suren M. Zakian

Characterization of the Genomic Xist Locus in Rodents Reveals Conservation of Overall Gene Structure and Tandem Repeats but Rapid Evolution of Unique Sequence
Genome Res. 2001 11: 833-849. [Abstract] [Full Text]  

Carole Charlier, Karin Segers, Danny Wagenaar, Latifa Karim, Stéphane Berghmans, Olivier Jaillon, Tracy Shay, Jean Weissenbach, Noelle Cockett, Gabor Gyapay, and Michel Georges

Human-Ovine Comparative Sequencing of a 250-kb Imprinted Domain Encompassing the Callipyge (clpg) Locus and Identification of Six Imprinted Transcripts: DLK1, DAT, GTL2, PEG11, antiPEG11, and MEG8
Genome Res. 2001 11: 850-862. [Abstract] [Full Text]  

METHODS:

Pauline C. Ng and Steven Henikoff

Predicting Deleterious Amino Acid Substitutions
Genome Res. 2001 11: 863-874. [Abstract] [Full Text]  

Dirk Walther, Gábor Bartha, and Macdonald Morris

Basecalling with LifeTrace
Genome Res. 2001 11: 875-888. [Abstract] [Full Text]  

Zhengyan Kan, Eric C. Rouchka, Warren R. Gish, and David J. States

Gene Structure Prediction and Alternative Splicing Analysis Using Genomically Aligned ESTs
Genome Res. 2001 11: 889-900. [Abstract] [Full Text]  

Marcus Frohme, Anamaria A. Camargo, Claudia Czink, Adriana Y. Matsukuma, Andrew J.G. Simpson, Jörg D. Hoheisel, and Sergio Verjovski-Almeida

Directed Gap Closure in Large-Scale Sequencing Projects
Genome Res. 2001 11: 901-903. [Abstract] [Full Text]  

RESOURCES:

Degen Zhuo, Wei D. Zhao, Fred A. Wright, Hee-Yung Yang, Jian-Ping Wang, Russell Sears, Troy Baer, Do-Hun Kwon, David Gordon, Solomon Gibbs, Dean Dai, Qing Yang, Joe Spitzner, Ralf Krahe, Don Stredney, Al Stutz, and Bo Yuan

Assembly, Annotation, and Integration of UNIGENE Clusters into the Human Genome Draft
Genome Res. 2001 11: 904-918. Published in Advance April 11, 2001, 10.1101/gr.GR-1645R [Abstract] [Full Text]  

Errata:

Errata for vol. 11, p. 531
Genome Res. 2001 11: 919. [Full Text]  

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