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Published online before print
January 14, 2003 Genome Research, DOI: 10.1101/gr.401003
LETTER
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  I. Tagkopoulos, Y.-C. Liu, and S. Tavazoie Predictive Behavior Within Microbial Genetic Networks Science, June 6, 2008; 320(5881): 1313 - 1317. [Abstract] [Full Text] [PDF]
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 T. S. Gunasekera, L. N. Csonka, and O. Paliy Genome-Wide Transcriptional Responses of Escherichia coli K-12 to Continuous Osmotic and Heat Stresses J. Bacteriol., May 15, 2008; 190(10): 3712 - 3720. [Abstract] [Full Text] [PDF]
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 S. Kalujnaia, I. S. McWilliam, V. A. Zaguinaiko, A. L. Feilen, J. Nicholson, N. Hazon, C. P. Cutler, and G. Cramb Transcriptomic approach to the study of osmoregulation in the European eel Anguilla anguilla Physiol Genomics, November 14, 2007; 31(3): 385 - 401. [Abstract] [Full Text] [PDF]
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 J. Matsunaga, M. Lo, D. M. Bulach, R. L. Zuerner, B. Adler, and D. A. Haake Response of Leptospira interrogans to Physiologic Osmolarity: Relevance in Signaling the Environment-to-Host Transition Infect. Immun., June 1, 2007; 75(6): 2864 - 2874. [Abstract] [Full Text] [PDF]
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P. Shkilnyj and G. B. Koudelka Effect of Salt Shock on Stability of {lambda}imm434 Lysogens J. Bacteriol., April 15, 2007; 189(8): 3115 - 3123. [Abstract] [Full Text] [PDF]
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 A. R. Reckinger, K. S. Jeong, A. B. Khodursky, and H. Hiasa RecA can stimulate the relaxation activity of topoisomerase I: Molecular basis of topoisomerase-mediated genome-wide transcriptional responses in Escherichia coli Nucleic Acids Res., January 12, 2007; 35(1): 79 - 86. [Abstract] [Full Text] [PDF]
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D. F. Ackerley, Y. Barak, S. V. Lynch, J. Curtin, and A. Matin Effect of Chromate Stress on Escherichia coli K-12 J. Bacteriol., May 1, 2006; 188(9): 3371 - 3381. [Abstract] [Full Text] [PDF]
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E. V. Patridge and J. G. Ferry WrbA from Escherichia coli and Archaeoglobus fulgidus Is an NAD(P)H:Quinone Oxidoreductase. J. Bacteriol., May 1, 2006; 188(10): 3498 - 3506. [Abstract] [Full Text] [PDF]
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H. Wang, M. Kaloper, and C. J. Benham SIDDBASE: a database containing the stress-induced DNA duplex destabilization (SIDD) profiles of complete microbial genomes Nucleic Acids Res., January 1, 2006; 34(suppl_1): D373 - D378. [Abstract] [Full Text] [PDF]
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 B. Munneke, K. A. Schlauch, K. L. Simonsen, W. D. Beavis, and R. W. Doerge Adding Confidence to Gene Expression Clustering Genetics, August 1, 2005; 170(4): 2003 - 2011. [Abstract] [Full Text] [PDF]
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A. Francez-Charlot, M.-P. Castanie-Cornet, C. Gutierrez, and K. Cam Osmotic Regulation of the Escherichia coli bdm (Biofilm-Dependent Modulation) Gene by the RcsCDB His-Asp Phosphorelay J. Bacteriol., June 1, 2005; 187(11): 3873 - 3877. [Abstract] [Full Text] [PDF]
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S. Lacour and P. Landini {sigma}S-Dependent Gene Expression at the Onset of Stationary Phase in Escherichia coli: Function of {sigma}S-Dependent Genes and Identification of Their Promoter Sequences J. Bacteriol., November 1, 2004; 186(21): 7186 - 7195. [Abstract] [Full Text] [PDF]
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K. Li, C. Pasternak, E. Hartig, K. Haberzettl, A. Maxwell, and G. Klug Thioredoxin can influence gene expression by affecting gyrase activity Nucleic Acids Res., August 24, 2004; 32(15): 4563 - 4575. [Abstract] [Full Text] [PDF]
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 H. Wang, M. Noordewier, and C. J. Benham Stress-Induced DNA Duplex Destabilization (SIDD) in the E. coli Genome: SIDD Sites Are Closely Associated With Promoters Genome Res., August 1, 2004; 14(8): 1575 - 1584. [Abstract] [Full Text] [PDF]
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 J. A. Bernstein, P.-H. Lin, S. N. Cohen, and S. Lin-Chao Global analysis of Escherichia coli RNA degradosome function using DNA microarrays PNAS, March 2, 2004; 101(9): 2758 - 2763. [Abstract] [Full Text] [PDF]
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factor rpoS. In addition,
these studies implicate 60 uncharacterized genes in the osmotic stress
regulon, and offer evidence for a broader role for supercoiling in the
control of stress-induced transcription.