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Published online before print
May 16, 2002 Genome Research, DOI: 10.1101/gr.229102
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  Y. Xing, P. Stoilov, K. Kapur, A. Han, H. Jiang, S. Shen, D. L. Black, and W. H. Wong MADS: A new and improved method for analysis of differential alternative splicing by exon-tiling microarrays RNA, August 1, 2008; 14(8): 1470 - 1479. [Abstract] [Full Text] [PDF]
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 Y. Shima, M. Zubair, T. Komatsu, S. Oka, C. Yokoyama, T. Tachibana, T. A. Hjalt, J. Drouin, and K.-i. Morohashi Pituitary Homeobox 2 Regulates Adrenal4 Binding Protein/Steroidogenic Factor-1 Gene Transcription in the Pituitary Gonadotrope through Interaction with the Intronic Enhancer Mol. Endocrinol., July 1, 2008; 22(7): 1633 - 1646. [Abstract] [Full Text] [PDF]
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B. M. Kublaoui, T. Gemelli, K. P. Tolson, Y. Wang, and A. R. Zinn Oxytocin Deficiency Mediates Hyperphagic Obesity of Sim1 Haploinsufficient Mice Mol. Endocrinol., July 1, 2008; 22(7): 1723 - 1734. [Abstract] [Full Text] [PDF]
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H. Wang, T. H. Peiris, A. Mowery, J. Le Lay, Y. Gao, and L. E. Greenbaum CCAAT/Enhancer Binding Protein-{beta} Is a Transcriptional Regulator of Peroxisome-Proliferator-Activated Receptor-{gamma} Coactivator-1{alpha} in the Regenerating Liver Mol. Endocrinol., July 1, 2008; 22(7): 1596 - 1605. [Abstract] [Full Text] [PDF]
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M. Yassour, T. Kaplan, A. Jaimovich, and N. Friedman Nucleosome positioning from tiling microarray data Bioinformatics, July 1, 2008; 24(13): i139 - i146. [Abstract] [PDF]
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A. V. Smith Generating HapMap Data Text Reports Using the Genome Browser CSH Protocols, July 1, 2008; 2008(8): pdb.prot5024 - pdb.prot5024. [Abstract] [Full Text]
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A. V. Smith Manipulating HapMap Data Using HaploView CSH Protocols, July 1, 2008; 2008(8): pdb.prot5025 - pdb.prot5025. [Abstract] [Full Text]
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A. V. Smith Retrieving HapMap Data Using HapMart CSH Protocols, July 1, 2008; 2008(8): pdb.prot5026 - pdb.prot5026. [Abstract] [Full Text]
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A. V. Smith Retrieving HapMap Data via Bulk Download CSH Protocols, July 1, 2008; 2008(8): pdb.prot5027 - pdb.prot5027. [Abstract] [Full Text]
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I. Albert, S. Wachi, C. Jiang, and B. F. Pugh GeneTrack--a genomic data processing and visualization framework Bioinformatics, May 15, 2008; 24(10): 1305 - 1306. [Abstract] [Full Text] [PDF]
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R. F. Thompson, M. Reimers, B. Khulan, M. Gissot, T. A. Richmond, Q. Chen, X. Zheng, K. Kim, and J. M. Greally An analytical pipeline for genomic representations used for cytosine methylation studies Bioinformatics, May 1, 2008; 24(9): 1161 - 1167. [Abstract] [Full Text] [PDF]
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 A. S. Lee, M. Gutierrez-Arcelus, G. H. Perry, E. J. Vallender, W. E. Johnson, G. M. Miller, J. O. Korbel, and C. Lee Analysis of copy number variation in the rhesus macaque genome identifies candidate loci for evolutionary and human disease studies Hum. Mol. Genet., April 15, 2008; 17(8): 1127 - 1136. [Abstract] [Full Text] [PDF]
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D. Tantin, M. Gemberling, C. Callister, and W. Fairbrother High-throughput biochemical analysis of in vivo location data reveals novel distinct classes of POU5F1(Oct4)/DNA complexes Genome Res., April 1, 2008; 18(4): 631 - 639. [Abstract] [Full Text] [PDF]
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L. Bethke, E. Webb, A. Murray, M. Schoemaker, C. Johansen, H. C. Christensen, K. Muir, P. McKinney, S. Hepworth, P. Dimitropoulou, et al. Comprehensive analysis of the role of DNA repair gene polymorphisms on risk of glioma Hum. Mol. Genet., March 15, 2008; 17(6): 800 - 805. [Abstract] [Full Text] [PDF]
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E. Darai-Ramqvist, A. Sandlund, S. Muller, G. Klein, S. Imreh, and M. Kost-Alimova Segmental duplications and evolutionary plasticity at tumor chromosome break-prone regions Genome Res., March 1, 2008; 18(3): 370 - 379. [Abstract] [Full Text] [PDF]
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 D. N. Levasseur, J. Wang, M. O. Dorschner, J. A. Stamatoyannopoulos, and S. H. Orkin Oct4 dependence of chromatin structure within the extended Nanog locus in ES cells Genes & Dev., March 1, 2008; 22(5): 575 - 580. [Abstract] [Full Text] [PDF]
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 O. Frank, C. Verbeke, N. Schwarz, J. Mayer, A. Fabarius, R. Hehlmann, C. Leib-Mosch, and W. Seifarth Variable Transcriptional Activity of Endogenous Retroviruses in Human Breast Cancer J. Virol., February 15, 2008; 82(4): 1808 - 1818. [Abstract] [Full Text] [PDF]
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E. Torarinsson, Z. Yao, E. D. Wiklund, J. B. Bramsen, C. Hansen, J. Kjems, N. Tommerup, W. L. Ruzzo, and J. Gorodkin Comparative genomics beyond sequence-based alignments: RNA structures in the ENCODE regions Genome Res., February 1, 2008; 18(2): 242 - 251. [Abstract] [Full Text] [PDF]
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J. E. Karro, M. Peifer, R. C. Hardison, M. Kollmann, and H. H. von Grunberg Exponential Decay of GC Content Detected by Strand-Symmetric Substitution Rates Influences the Evolution of Isochore Structure Mol. Biol. Evol., February 1, 2008; 25(2): 362 - 374. [Abstract] [Full Text] [PDF]
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M. S. Halfon, S. M. Gallo, and C. M. Bergman REDfly 2.0: an integrated database of cis-regulatory modules and transcription factor binding sites in Drosophila Nucleic Acids Res., January 11, 2008; 36(suppl_1): D594 - D598. [Abstract] [Full Text] [PDF]
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D. Karolchik, R. M. Kuhn, R. Baertsch, G. P. Barber, H. Clawson, M. Diekhans, B. Giardine, R. A. Harte, A. S. Hinrichs, F. Hsu, et al. The UCSC Genome Browser Database: 2008 update Nucleic Acids Res., January 11, 2008; 36(suppl_1): D773 - D779. [Abstract] [Full Text] [PDF]
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A. Stark, N. Bushati, C. H. Jan, P. Kheradpour, E. Hodges, J. Brennecke, D. P. Bartel, S. M. Cohen, and M. Kellis A single Hox locus in Drosophila produces functional microRNAs from opposite DNA strands Genes & Dev., January 1, 2008; 22(1): 8 - 13. [Abstract] [Full Text] [PDF]
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H. Gao, S. Falt, A. Sandelin, J.-A. Gustafsson, and K. Dahlman-Wright Genome-Wide Identification of Estrogen Receptor {alpha}-Binding Sites in Mouse Liver Mol. Endocrinol., January 1, 2008; 22(1): 10 - 22. [Abstract] [Full Text] [PDF]
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P. G. Engstrom, S. J. Ho Sui, O. Drivenes, T. S. Becker, and B. Lenhard Genomic regulatory blocks underlie extensive microsynteny conservation in insects Genome Res., December 1, 2007; 17(12): 1898 - 1908. [Abstract] [Full Text] [PDF]
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M. F. Lin, J. W. Carlson, M. A. Crosby, B. B. Matthews, C. Yu, S. Park, K. H. Wan, A. J. Schroeder, L. S. Gramates, S. E. St. Pierre, et al. Revisiting the protein-coding gene catalog of Drosophila melanogaster using 12 fly genomes Genome Res., December 1, 2007; 17(12): 1823 - 1836. [Abstract] [Full Text] [PDF]
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S. Ro, C. Park, D. Young, K. M. Sa |
