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Published online before print
March 20, 2002, 10.1101/gr.218402
Vol. 12, Issue 4, 613-617, April 2002
LETTER
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ABSTRACT |
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Vestibular dysfunction is a frequent clinical problem, leading to dizziness and imbalance. Genes play an important role in its etiology, but the genetics are complex and poorly understood. In this study we have analyzed the complex inheritance pattern in the Epistatic circler mouse, which shows circling behavior indicative of vestibular dysfunction in the mouse. This phenotype exists in a proportion of the F2-generation from an intercross between C57L/J and SWR/J mouse strains. Genetic investigation indicates that the circling behavior is caused by a major recessively inherited gene derived from the SWR/J strain (the Ecs-gene) in combination with at least three different modifier genes derived from C57L/J (the Ecl-genes). Genetic mapping made it possible to localize the Ecs-gene to chromosome 14 and the Ecl-genes to chromosome 3, 4, and 13. This study illustrates the feasibility of identifying genes for multifactorial traits in mice.
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INTRODUCTION |
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The vestibular system plays a key role in postural reflexes
(reflexes that stabilize the body such as forelimb
extension, hindlimb flexion, and activation of head muscles) and in
compensating eye movements of head displacement by means of the
vestibulo-ocular reflex. This reflex is a mechanism that produces eye
movements that counter head movements to stabilize the gaze. If the
system is damaged, gaze stabilization, balance, and orientation in
space are all affected. These manifestations of vestibular damage can have severe consequences in man such as vertigo, oscillopsia, and
imbalance. Although vestibular dysfunction is seen in a few rare
monogenic syndromes, it is commonly encountered in isolated form in
otological practice, the etiology often remaining obscure. The
importance of genetic factors in peripheral vestibular dysfunction has
been stressed on numerous occasions (Verhagen et al. 1987
; Baloh et
al.1994
), but little is known about the underlying genes. The most
important reason why genetic studies of human genetic vestibular
defects are difficult to perform lies in the lack of large monogenic
pedigrees containing a sufficient number of affected family members to
perform genetic linkage analysis. Therefore, vestibular dysfunction is
thought to be a multifactorial condition involving interactions between
multiple genes in most cases. The use of animal models, and in
particular mouse models, is an alternative to genetic studies in human
to gain more insight into the complex phenomenon of vestibular dysfunction.
In this study we have used the Epistatic circler mouse as a
model for vestibular dysfunction. Doolittle (1963)
was the first to
describe the Epistatic circler mouse in the early 1960s. He reported that a small proportion of the F2-generation of the cross between C57L/J and SWR/J inbred mouse strains shows
shaker-waltzer behavior. Shaker-waltzer behavior is a common phenomenon
among mouse mutants and consists of hyperactivity, head shaking, and/or circling. It is caused by vestibular dysfunction and is often associated with structural anomalies of the vestibular apparatus. According to Doolittle (1963)
, the Epistatic circler mice
circled either to the left or to the right, showed no head tremor, did not appear to be deaf, and swam well. He indicated that the circling behavior results from the X-yy genotype in which X is the dominant Ecl-gene, derived from C57L/J, and y the recessive
Ecs-gene, derived from SWR/J (Doolittle 1963
).
Alternatively, Taylor (1976)
suggested that the circling behavior of
Epistatic circler mice is caused by the simultaneous
homozygosity for two recessive genes. After outcrossing AKXL
recombinant inbred lines to SWR/J, Taylor found that the
circling behavior in the F2-progenies showed concordant inheritance
with the hexose-6-phosphate dehydrogenase locus on chromosome 4 in
eight recombinant inbred lines, suggesting that the Ecl-gene
is localized on chromosome 4. However, because Taylor used a different
strain combination than Doolittle, it cannot be excluded that the
different models are attributable to the strain combinations used. No
detailed genetic investigation of the Epistatic circler mouse
has been published before. In the present study we used the model
proposed by Taylor as a starting point to perform mapping studies.
Genetic mapping revealed that the circling behavior is caused by a
combination of a major recessive Ecs-gene and three modifying
Ecl-genes.
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RESULTS |
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Intercross and Backcross
C57L/J mice were mated with SWR/J mice and an intercross was set up between the F1-progeny. Recovered were 3662 F2-progeny, which were scored phenotypically for their circling behavior at the age of 3 wk. Actively circling animals were scored as affected, and small pieces of their tails were cut off for DNA preparation. Of the 3662 mice, 115 were scored as affected, which corresponds to 1 in 32. Affected as well as unaffected F2-animals were fertile. Affected mice also showed hyperactivity without head bobbing. To verify that the circler mutants had normal hearing, we tested their Preyer reflex. Sound stimuli evoked a flick of the pinnae in all 115 circling F2-animals. In addition, hearing in mice was assessed by auditory brainstem response (ABR) measurements in two F2-circlers and two noncircling littermates, all at the age of 2 mo. Circling as well as noncircling F2-animals showed the same ABR pattern in response to a broad frequency range stimulus.
An additional backcross was set up between affected F2-animals and mice from the SWR/J strain. Recovered were 411 N2-progeny, which were tested for circling behavior. Eighteen animals showed circling behavior (1 in 23).
Homozygosity Mapping
Pooling DNA samples is a very efficient approach for mapping
recessive genes and has been used previously in mice for mapping Mendelian and complex traits (Taylor and Rowe 1989
; Asada et al. 1994
;
Alfred et al. 1997
). It basically consists of reducing the number of
PCR reactions and subsequent gel runs through analysis of a combined
DNA sample obtained by pooling together equal amounts of DNA from
affected animals. Based on segregation analysis, Taylor (1976)
suggested that the circling behavior is attributable to two recessive
genes. We used this model as a starting point for linkage analysis and
used a DNA-pooling strategy to rapidly identify the chromosomal regions
that carry recessive Ecl- and/or Ecs-genes. First, we
analyzed which markers from the Mouse MAPPAIRS Genome-Wide Screening
Set were polymorphic between C57L/J and SWR/J mice. Of 340 tested markers, 240 showed a different allele for both parental
strains. These 240 microsatellite markers were dispersed over the
entire autosomal portion of the genome and were analyzed on a combined
DNA sample that was obtained by pooling equal amounts of DNA from 17 F2-circlers. To be sure that the distance between two markers was not
>20 cM, eight additional markers were chosen from the Whitehead/MIT
map. Of all 248 markers tested in the genome scan, two markers
(D14Mit 120 and D14Mit 141) showed only the allele of
SWR/J in the affected DNA pool. Both markers were located in
the same chromosomal region, suggesting that the Ecs-gene was located on chromosome 14. To confirm this result, we analyzed these two
markers on the 17 separate DNA samples. All 17 F2-circlers were
homozygous for the SWR/J allele of this microsatellite marker.
-square testing gave a P-value <10
11 for
both markers, in which a pointwise P-value <10
4 has been
suggested as significant linkage for genome-wide studies in the mouse
(expected to occur 0.05 times by chance in a genome scan) (Lander and
Kruglyak 1995
). LOD score calculations for both markers gave identical
maximum LOD scores of 10.2 in which a LOD score of 3.3 has been
suggested as a genome-wide significance limit (Lander and Kruglyak
1995
). D14Mit44, a marker proximal to
D14Mit120, and D14Mit32, a marker distal to
D14Mit141, showed both alleles from C57L/J and
SWR/J in the DNA pool. These results place the
Ecs-locus in a 24 cM region on chromosome 14 (based on the
Whitehead/MIT map). None of the 248 informative markers showed only the
C57L/J allele in the analysis of the DNA pool. Therefore, no
markers linked to the Ecl-locus were detected, indicating that
there is no recessive Ecl-gene.
Mapping of the Ecl-Gene
As homozygosity mapping did not yield any markers linked to the
Ecl-locus, we hypothesized that the Ecl-gene was a
nonrecessive gene. To confirm this hypothesis, we set up an additional
cross between F2-circlers and SWR/J mice. The offspring of
this cross (N2) will never show homozygosity for the mutant
Ecl-gene, because it is derived from C57L/J. In
consequence, if there are any circling animals in the N2-offspring of
this cross, they will invariably show heterozygosity for the mutant
Ecl-gene, excluding the possibility of recessive
Ecl-genes. Eighteen out of 411 N2-progeny showed circling
behavior, confirming the nonrecessive character of the Ecl-gene. To localize this gene, we separately genotyped 46 F2-circlers using 87 polymorphic markers dispersed over the entire
autosomal portion of the genome. Again we included the same eight
additional markers as in the homozygosity mapping, which were located
in the regions with the largest intermarker distances. P-values were calculated for each marker. Of all markers tested, 22 markers showed a
P-value of 0.05 or less. Five of these markers were localized on
chromosome 14, confirming the linkage to the Ecs-locus
previously found by means of the DNA-pooling strategy. With the
exception of the chromosome 14 markers, the other 17 markers with a
suggestive P-value were analyzed on 43 additional samples. Only seven
markers showed a P-value of 10
4 or less (based on 89 samples), which indicates significant linkage (Lander and Kruglyak
1995
). These markers were located on chromosome 3, 4, and 13. The most
frequent allele was in each case derived from the C57L/J
strain. For the localization on chromosome 3, 4, and 13, two nearby
markers were analyzed on 89 samples to confirm linkage. All additional
markers showed a P-value of 10
4 or less. Figure
1 gives a graphical overview of the
P-values from chromosomes 3, 4, 13, and 14.
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Liability Scale
Because the Ecs-gene is a major determinant, necessary but
not sufficient to cause circling, we wanted to investigate the contribution of the Ecl-genes by defining a liability scale to determine a threshold. To do this, we first genotyped 243 F2-noncirclers for the recessive Ecs-gene. Fifty of these
unaffected animals inherited both copies of the mutant
Ecs-gene. In a next stage, we genotyped 47 of these selected
animals for a genetic marker close to each of the three
Ecl-genes (on chromosome 3, 4, and 13), and we counted the
number of risk Ecl-alleles (the allele originating from
C57L/J). For genotyping, we chose markers with the most
significant P-value (D3Mit230, D4Mit251, and
D13Mit191). Table 1 gives an
overview of the distribution of different genotypes at the three
Ecl-loci. Note that animals that show two Ecla-risk alleles (chromosome 3) and one Eclc-risk allele (chromosome
13) but no Eclb-risk allele (chromosome 4), are unaffected
(AAbbCc genotype). This genotype was never found in affected animals, whereas 8.5% of the unaffected animals displayed this genotype. Only
one affected animal did not inherit an Eclb-risk allele
(chromosome 4). Figure 2 gives a graphical
overview of these results for a model of equal and additive
contribution of the three Ecl-genes. Although there is a shift
in the number of risk alleles between unaffected and affected
F2-animals, there is no complete separation between affected and
unaffected animals, and a clear threshold cannot be determined.
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DISCUSSION |
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In this paper we report on the genetic characteristics of the
Epistatic circler mouse, an existing mutant with a vestibular pathology. The most overt behavior consists of rapid bidirectional circling and hyperactivity, which is indicative of vestibular dysfunction (Steel 1991
). A positive Preyer reflex and normal ABR test
results indicate that the hearing of the Epistatic circler mouse is not severely affected.
To map the responsible genes, we first performed a genome scan by means of a DNA-pooling strategy. This study revealed a single major recessive gene, the Ecs-gene, located on chromosome 14. An additional cross between F2-circlers and SWR/J mice indicated that the Ecl-gene shows a nonrecessive character. Surprisingly, a genome search revealed that the circling behavior in the Epistatic circler mouse is under the control of more than two genes. Next to the recessive Ecs-gene, we found three modifying Ecl-genes localized at chromosomes 3, 4, and 13. We propose to call these genes Ecla, Eclb, and Eclc, respectively. We compared genotypes of circling and noncircling mice to define a model explaining the interaction between the different genes. Two important facts were noted. First, we never found circling mice that were not homozygous for the Ecs-gene, indicating that two risk alleles for Ecs are needed for circling. Second, we could identify only one affected animal that showed homozygosity for the nonrisk allele of the Eclb-gene. As the exact genetic distance between the marker used for genotyping and the Eclb-gene is unknown, a recombination between these two may have occurred. In this case, all affected animals have at least one risk allele for Eclb, and one copy is probably obligatory for circling. The fact that Ecla and Eclc are clearly not obligatory suggests an epistatic interaction between Ecs (recessive) and Eclb (nonrecessive), with additive effects of Ecla, Eclc, and possibly the second allele of Eclb. A simple model of equal and additive effects for Ecl-genes is represented in Figure 2. The fact that we were not able to determine a clear threshold in the number of risk Ecl-alleles indicates that this model is not (entirely) correct. Functional inequality between the three Ecl-genes may be an explanation, and the involvement of additional factors (genetic as well as environmental) also cannot be excluded. In conclusion, although other genes and environmental factors may be involved, it is clear that the Ecs-, Ecla-, Eclb-, and Eclc-genes are major factors that cause vestibular dysfunction in the Epistatic circler mouse.
We mapped the Eclb-gene on chromosome 4, where the
Wheels (Whl) mutation has previously been mapped
(Nolan et al.1995
). The Whl-mutation is an ENU-induced mouse
mutation that displays a complex phenotype, including hyperactive
circling. The map location of the Eclb-gene on chromosome 4 (66 cM distal to the centromere) allowed us to rule out the possibility
that the Eclb-gene is allelic to the Whl-mutation,
which is localized within the 0-8 cM region distal to the centromere
of chromosome 4 (Nolan et al.1995
). Whirler (Lane 1963
) and
Jerker (Eicher et al. 1977
) are other candidate genes,
localized in this region on chromosome 4. Both mouse mutants show
circling behavior in addition to profound deafness. The
Whirler mutation is located 31.4 cM distal to the centromere
(Lane 1963
), and Jerker maps at 80.1 cM distal to the
centromere (Eicher et al. 1977
). Haplotypes of the
Eclb-candidate region must be constructed to indicate if one
of these genes is located in the Eclb-candidate region.
In conclusion, the circling behavior in the Epistatic circler mouse is controlled by a necessary recessive Ecs-gene and a necessary Eclb-gene in combination with several facultative-modifying Ecl-genes. The unique inheritance pattern makes this model a valuable tool in the study of vestibular congenital malformation anomalies, because this trait in humans is in most cases a multifactorial condition as well, and unraveling the genetic basis will be much easier in an animal model. The four loci responsible for the circling phenotype in the Epistatic circler mouse are potential candidates for being involved in human genetic imbalance. Nevertheless, the actual role of these loci in vestibular dysfunction will remain obscure until further studies have been conducted and until the relation between the four genes is understood. This study illustrates the importance of animal models in the study of such complex diseases and at the same time provides evidence that identification of genetic determinants of multigenic traits is possible with modern molecular genetic tools.
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METHODS |
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Mice
C57L/J and SWR/J mice were purchased from the Jackson Laboratory and IFFA CREDO (Charles River Company), respectively. Mouse care and experimental treatment were conducted in compliance with institutional and EU laws and policies.
Hearing Assessment
A handclap was used as a sound stimulus to detect mice with severe hearing impairment. A flick backward of the pinnae on hearing this sound was considered to be a positive Preyer reflex. We evaluated this reflex in all circling animals. Hearing in mice was also assessed by auditory brainstem response (ABR) measurements. Mice were anaesthetized with pentobarbital (60 mg/kg). Electrodes were placed subcutaneously near the ears. A Galileo Sirius system was used to deliver acoustic stimuli and measure the evoked brainstem response of anaesthetized mice. Mice were tested with broadband click stimuli at different intensities.
Isolation of DNA
A small piece of the tip of the tail of the mice was cut off using sharp scissors. The tail tip was incubated overnight at 37°C in a 655-µL lysis solution containing 10-mM Tris, 400-mM NaCl, 2-mM EDTA-di-Na, 1-µg/µL proteinase K, and 0.6% SDS. The solution was phenol/chloroform extracted and genomic DNA precipitated with ethanol. After redissolving the DNA, DNA concentrations were determined spectrophotometrically and samples were diluted to 100-ng/µL. For DNA samples used in the DNA-pooling experiment, a second spectrophotometric reading was taken to confirm the concentration.
Genetic Markers
For the genome scan, the Mouse MAPPAIRS Genome-Wide Screening Set was purchased from Research Genetics. This set contains 410 selected markers (developed by the Whitehead/MIT Center for Genome Research) with an average intermarker distance of 3.5 cM.
Before PCR, forward primers were radioactively labeled with
[
32P] ATP using T4 polynucleotide kinase. PCR reaction
mixtures included 100-ng genomic DNA, 0.15-µM of each primer,
275-µM dNTPs, 0.35-U Taq polymerase, and 1.3-µL 10X PCR buffer
containing 2-M Tris at pH 8, 3-M KCl, 100-mM MgCl2, 1% (v/v)
Triton X-100, and 0.1% (w/v) gelatin. PCR conditions were as follows:
initial denaturation of 3 min at 92°C was followed by 25 cycles of 15 sec at 92°C, 1 min at 55°C, and 1 min at 72°C. A final extension
step consisted of 7 min at 72°C. The denaturated PCR products were
run on a 6% polyacrylamide, 8-M urea-sequencing gel. Polymorphic bands
were visualized by autoradiography. Extra markers for regions of
interest were chosen from Mouse MAPPAIRS Genome-Wide Screening Set or
from the Whitehead/MIT map
(http://carbon.wi.mit.edu:8000/cgi-bin/mouse) if no suitable
markers were available from the screening set. The extra markers were
D3Mit22, D3Mit142, D4Mit148,
D4Mit251, D13Mit186, and D13Mit213. For
markers that were not present in the Mouse MAPPAIRS Genome-Wide
Screening Set, one of the primers was designed with an M13 sequence at
the 5'end. A 5'-IRD (800 nm) M13 primer was included in the PCR
reaction, thus labeling the PCR product. Gel electrophoresis and
pattern visualization was performed using an LI-COR model 4200 DNA
analyzer (NEN). For primers with an M13 sequence, different PCR
conditions were used: PCR reaction mixtures included 100-ng genomic
DNA, 0.05-µM of each primer, 170-µM dNTPs, 0.43-µM M13 primer,
0.35-U Taq polymerase, and 1-µl 10X PCR buffer. PCR conditions were
as follows: initial denaturation of 3 min at 95°C was followed by 40 cycles of 1 min at 95°C, 1 min at 58°C, and 1 min at 72°C. A
final extension step consisted of 20 min at 72°C.
Linkage Analysis
MLINK two-point linkage analysis using the LINKAGE
software package version 5.1 (Lathrop and Lalouel 1984
) was performed between the Ecs-gene and the markers that suggested linkage,
based on the results of the homozygosity mapping strategy. The
frequency of the Ecs-gene was set at 0.0001. Equal
recombination frequencies between males and females were assumed. LOD
scores of 3.3 were considered as significant linkage (Lander and
Kruglyak 1995
). Because the LINKAGE software has
limitations for the number of sibs in a pedigree, we were not able to
calculate LOD score values for the genome scan for the
Ecl-genes. We therefore calculated
-square values based on
observed and expected values for the three genotypes (homozygous for
the allele from C57L/J, heterozygous and homozygous for the
allele from SWR/J). The expected values were based on the
theoretically expected frequencies (1:2:1) for the three
genotypes. P-values <10
4 were considered as significant
for a genome-wide search (Lander and Kruglyak 1995
).
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ACKNOWLEDGMENTS |
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We thank Peter Demant for helpful discussion regarding the statistical analysis and liability scale and Rudy D'Hooge for help with ABR measurements. This research was supported by the Life Sciences Foundation (NWO-ALW/SLW; project #805.33.313; A.M.V.A., CIDZ) and the Medical Research Division of The Dutch Organisation for Scientific Research (NWO-MW; CIDZ), and HFSP (CIDZ). K.C. holds a predoctoral position with the Instituut voor de aanmoediging van Innovatie door Wetenschap en Technologie in Vlaanderen (IWT), and G.V.C. holds a research position with the FWO.
The publication costs of this article were defrayed in part by payment of page charges. This article must therefore be hereby marked "advertisement" in accordance with 18 USC section 1734 solely to indicate this fact.
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FOOTNOTES |
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5 Corresponding author.
E-MAIL gvcamp{at}uia.ua.ac.be; FAX 323 820 2566.
Article and publication are at http://www.genome.org/cgi/doi/10.1101/gr.218402.
Article published online before print in March 2002.
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REFERENCES |
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Received October 11, 2001; accepted in revised form January 29, 2002.
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