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Vol. 10, Issue 4, 446-453, April 2000
LETTER
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ABSTRACT |
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Type 1 diabetes in the nonobese diabetic (NOD) mouse arises as a
consequence of T cell-mediated destruction of the insulin-producing
cells of the pancreas. Although little is known of the events that initiate and subsequently drive
-cell destruction it is clear
that the entire process is under complex genetic control. At present 19 loci have been mapped that influence the development of diabetes either
at the level of initiation of insulitis or at the level of progression
from insulitis to overt diabetes, or both. Previously, we have mapped
one of these loci, Idd3, to a 0.35-cM interval on proximal
mouse chromosome 3. In the present study we have narrowed the map
position of this locus to an interval of 0.15 cM by a combination of
novel congenic strains and an ancestral haplotype analysis approach. We
have constructed a physical contig in bacterial artificial chromosome
(BAC) clones across the minimal interval. Restriction mapping of the
BAC contig placed the maximum size of the Idd3 interval at 780 kb between the markers D3Nds36 and D3Nds76. To refine
further the Idd3 interval we developed a series of novel
single nucleotide polymorphisms (SNPs) and carried out haplotype
analysis on DNA from mouse strains known to carry either Idd3
susceptibility or protective alleles. This haplotype analysis
identified a 145-kb segment of ancestral DNA between the microsatellite
marker D3Nds6 and the SNP 81.3. One haplotype of this
ancestral segment of DNA is found in mouse strains carrying an
Idd3 susceptibility allele and another is found in mouse
strains carrying an Idd3 protective allelle. Within the 780-kb
congenically defined interval this 145-kb segment represents the most
likely location for Idd3. The Il2 gene, which encodes
the cytokine interleukin 2 (IL2), maps to this interval and is a strong
candidate for Idd3. To investigate whether sequence variation
exists in the promoter region of the Il2 gene, which might
alter its expression, we sequenced the promoter region of the
Il2 gene from mouse strains carrying either an Idd3
susceptibility or resistance allele. Two sequence variants were
identified, neither of which fell in known regulatory elements within
the Il2 promoter. In agreement with this observation steady-state Il2 mRNA levels showed no variation between
susceptible and resistant mouse strains. These data suggest that the
profound protection from diabetes seen in congenic mice carrying an
Idd3 protective allele is unlikely to be due to differences in
the level of expression of the Il2 gene. Instead, all of the
current data support our hypothesis that Idd3 corresponds to
amino acid variation at the amino terminus of Il2.
[Sequence data reported in this paper have been deposited in GenBank and assigned the following accession numbers: AF19594, AF19595, and AF19596.]
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INTRODUCTION |
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Type 1 diabetes results from the autoimmune destruction of the
insulin-producing
cells of the pancreas. A
breakdown in immune homeostasis leads to a lymphocytic infiltration of
the pancreatic islets of Langerhans, a process known as insulitis,
which in turn progresses to
-cell destruction and overt disease.
Although the molecular events that initiate and subsequently drive the
process are uncertain it is clear that disease susceptibility is under complex genetic control.
The nonobese diabetic (NOD) mouse model of type 1 diabetes (Leiter
1998
) has greatly facilitated the genetic dissection of type 1 diabetes. At present, 19 loci have been mapped that contribute to the
development of type 1 diabetes in the NOD mouse (Leiter 1998
; Melanitou
et al. 1998
; Lyons and Wicker 1999
). The approach we have adopted for
the fine mapping of these insulin-dependent diabetes (Idd)
susceptibility loci in the NOD mouse is one of congenic mapping (Wicker
et al. 1994
, 1995
; Lord et al. 1995
; Denny et al. 1997
; Podolin et al. 1997
).
Using this approach we have previously mapped the Idd3 locus
to a 0.35-cM interval on proximal mouse chromosome 3 between the
microsatellite markers D3Nds55 and D3Nds40 (Denny et
al. 1997
). One gene known to map within this small interval is that
encoding the cytokine interleukin-2 (IL2) (Denny et al. 1997
). A
growing body of evidence makes Il2 a strong candidate for
Idd3. A series of reports have shown that IL2 plays a central
role in the development of self tolerance, with a lack of IL2 being
associated with the development of autoimmune disease (Hunig and
Schimpl 1998
). It has been shown that IL2 is essential for
activation-induced cell death of T cells mediated via the Fas pathway,
a key mechanism of self-tolerance (Refaeli et al. 1998
). We have shown
previously that sequence polymorphisms exist between IL2 allotypes from
different strains of mice (Ghosh et al. 1993
; Denny et al. 1997
) and
that these polymorphisms, in exon 1 of Il2, segregate with
susceptibility to diabetes (Denny et al. 1997
). Moreover, one of the
polymorphisms, the presence of proline rather than serine at position 6 of the mature IL2 protein, is associated with both the increased
glycosylation of IL2 and diabetes susceptibility (Podolin et al. 2000
).
Despite the observed sequence differences between IL2 allotypes from
diabetes-susceptible and -resistant strains no functional difference
has been reported. Although the Il2 promoter has been well
characterized it is unknown whether variation exists in this region
between mouse strains. Any variant that leads to an alteration in
expression of Il2 would be a strong candidate for the
Idd3 etiological mutation. Consistent with this possibility,
reduced secretion of IL2 by mitogen-activated splenocytes has been
reported previously in the NOD mouse (Serreze et al. 1989
).
In this study we have refined the genetic mapping of Idd3 to a 0.15-cM interval that still encompasses the Il2 gene. We have constructed a physical contig of mouse BAC clones across the new minimal interval and by restriction mapping have determined that the maximum size of the Idd3 interval is 780 kb. Haplotype analysis in mouse strains known to carry either an Idd3 susceptibility or protective allele identifies the most likely location of Idd3 as the 145-kb interval between the microsatellite marker D3Nds6 and the single nucleotide polymorphism (SNP) 81.3. To identify potential regulatory polymorphisms we sequenced the promoter region of the Il2 gene from mice carrying either susceptibility (NOD and 129) or protective (B6) alleles at Idd3. None of the identified variants within the Il2 promoter region fell in known regulatory elements. In agreement with this, no difference was observed in steady-state Il2 mRNA levels, as assessed by semiquantitative RT-PCR, between mice carrying Idd3 susceptibility or protective alleles.
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RESULTS |
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Generation of New Variant Microsatellite Markers within the Idd3 Interval
We have described previously the establishment of a YAC framework
map across the Idd3 region (Denny et al. 1997
). To facilitate the isolation of additional polymorphic markers from within the Idd3 region we identified mouse P1 and BAC clones positive for STSs developed from YACs spanning the Idd3 interval. Mouse P1 and BAC libraries were screened by PCR with the following STSs: B1R18STS, D3Nds36, D3Nds47, D3Nds6, D3Nds56, D3Nds51, D3Nds34, D3Nds46, D3Nds45, and D3Nds40. Four new microsatellite
markers, D3Nds76, D3Nds77, D3Nds78, and
D3Nds84, were isolated from the clones mP284k17, mP315n15,
mP305l10, and mP88b24, respectively. These new microsatellite markers
were ordered with respect to D3Nds55, D3Nds6,
D3Nds34, D3Nds36, and D3Nds40 by genotyping
the 944 progeny of an F2 cross between NOD and the strain
NOD.B62 (Lord et al. 1995
). The following map order was
obtained D3Nds55-(0.2 cM)-D3Nds36-(0.07
cM)-D3Nds84-(0 cM)-D3Nds6-(0
cM)-D3Nds34-(0.08 cM)- D3Nds76-(0
cM)-D3Nds77-(0 cM)-D3Nds78-(0
cM)-D3Nds40 (Fig. 1). Where the marker
order could not be resolved genetically the order was determined from
the Idd3 region physical map.
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Narrowing of the Idd3 Interval to 0.15 cM
Previously, we have mapped Idd3 to a 0.35-cM interval
between, but not including, the microsatellite markers D3Nds55
and D3Nds40 (Denny et al. 1997
). To more precisely map the
Idd3 interval, the NOD.B6 Idd3R808 strain was
developed from the previously described NOD.B62 congenic
strain (Lord et al. 1995
), a strain that carries the Idd3
resistance allele. Genotyping the NOD. B6 Idd3R808 strain with
polymorphic microsatellite markers that map to the Idd3
interval showed that it was NOD derived at D3Nds55 and
D3Nds36 and B6 derived at D3Nds84, D3Nds6,
D3Nds34, D3Nds76, D3Nds77, D3Nds78,
and D3Nds40 (Fig. 1). This mapped the proximal boundary of its
congenic segment to the 0.07-cM interval between D3Nds36 and
D3Nds84. The frequency of diabetes in females of this strain
at 7 months is 29.5% (26/88) compared with 25.4% (17/67) in the
NOD.B62 strain (P >0.05) and 77.8% (63/81) in
NOD (P < 0.0001). Thus, like NOD.B62, NOD. B6
Idd3R808 carries the Idd3 resistance allele. Because NOD. B6 Idd3R808 carries the Idd3 resistance allele
the proximal boundary of Idd3 must lie in the 0.07-cM interval
between the markers D3Nds36 and D3Nds84 (Fig. 1).
The distal boundary of Idd3 is defined by the congenic strains
NOD.B63 and NOD. B6 Idd3R450 (Lord et al. 1995
).
Typing these strains with the newly developed markers showed that both
strains recombine in the 0.08-cM interval between D3Nds34 and
D3Nds76 (Fig. 1). Thus, on the basis of this genotyping data
the size of the Idd3 locus has been reduced to the 0.15-cM
interval between, but not including, the markers D3Nds36 and
D3Nds76 (Fig. 1).
Construction of a BAC Contig Across the D3Nds36-to-D3Nds76 Interval
A BAC contig covering the minimal Idd3 interval was constructed as follows. Insert ends of clones, identified by screening the mouse BAC library with the STSs described earlier, were isolated and used to develop new STSs. These new STSs were then used to rescreen the library, identifying additional clones that spanned the gaps between adjacent clusters of clones. A total of 24 clones were isolated that together span the interval between D3Nds36 and D3Nds76 (Fig. 2).
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The size of each clone was determined by restriction enzyme digestion (Fig. 2). Each clone was digested independently with both NotIA and SalI to eliminate errors caused by the comigration of bands of similar size. STSs were assigned to individual Sal1 fragments by Southern hybridization and used to identify common bands in overlapping clones. Based on the degree of overlap between individual clones the physical distance between D3Nds36 and D3Nds76 is 780 kb (Fig. 2). The proximal boundary of Idd3 lies in the 315-kb interval between D3Nds36 and D3Nds84, whereas its distal boundary lies in the 65-kb segment between D3Nds34 and D3Nds76. Thus, the size of the Idd3 locus is between 400 and 780 kb (Fig. 2).
Refinement of the Idd3 Interval by Haplotype Mapping
To refine the Idd3 locus using congenic strains would be
impractical given the large number of mice that would have to be bred
to identify new recombinants within the interval. Therefore, to further
narrow the interval we carried out haplotype analysis on six mouse
strains known to carry either the Idd3 susceptibility or
protective allele. On the basis of either linkage analysis or congenic
mapping the strains 129, SWR, and ABH have been determined to be
susceptible at the Idd3 locus, whereas the B6 and NON strains are diabetes resistant at the locus (Denny et al. 1997
; Podolin et al. 2000
).
These strains were genotyped for all the microsatellite markers and
SNPs known to be variant between NOD and B6 that map to the 780-kb
Idd3 region (Table 1). In addition, nine
more novel SNPs were identified in the six strains by sequencing STSs
derived from BAC clone ends (Table 1). A comparison of the NOD and 129 mouse strains, both of which carry an Idd3 susceptibility
allele, shows that they have identical genotypes at all of the markers typed with the exception of D3Nds36 (Table 1). This data
confirms the congenic mapping data and identifies an
Idd3-susceptible haplotype. The sequence identity between the
two strains at multiple variable sites indicated the common ancestry of
this segment of DNA between the NOD and 129 strains. Analysis of the
two strains that carry an Idd3-protective allele, namely B6
and NON, reveals that they also have identical genotypes, but their
shared ancestral haplotype is distinct from that found in susceptible
strains at all markers (Table 1). This identifies an
Idd3-protective haplotype and narrows the Idd3
interval to the 365-kb region between D3Nds84 and
D3Nds76. Analysis of the ABH strain, which has an
Idd3-susceptible allele, shows that it carries the
Idd3-susceptible haplotype between the markers 229.1 and D3Nds76 (Table 1). These data place the proximal boundary
of Idd3 in the 4-kb interval between the microsatellite marker
D3Nds6 and the SNP 229.1. The SWR mouse strain has a
recombinant haplotype; it has the susceptible haplotype at the markers
229.1 through 81.2 and the protective haplotype at
the markers 81.3 through 51.2 (Table 1). Because SWR
has an Idd3-susceptible allele this gives the most likely
location of Idd3 as the 145-kb region between, but not
including, the microsatellite marker D3Nds6 and the SNP
81.3 (Table 1). As the G allele of the SNP
694 is
carried on both the protective and susceptible haplotypes it can be
excluded as a candidate for the Idd3 etiological mutation. Of
the four genes known to map to the 780-kb interval, namely Ccna,
Tenr, Il2, and Fgf2, only Il2 maps to the 145-kb
candidate region.
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Analysis of Il2 Gene Expression in Mouse Strains Carrying Idd3 Susceptibility or Protective Alleles
The promoter regions of the Il2 genes from NOD, B6, and 129 were sequenced to identify any polymorphisms that might lead to differences in transcription between mice carrying either Idd3 susceptibility or resistance alleles. The B6 promoter sequence was
determined by sequencing a cosmid clone, mC1h5, that contains the
entire IL2 structural gene. Based on this sequence data PCR primers
were designed to amplify the entire Il2 promoter region from
nucleotide
740 to nucleotide +100. This region has been shown
previously to encompass all the regulatory elements required for
transcription of Il2 (Serfling et al. 1995
). Using this
PCR-based approach, the sequences of the NOD and 129 Il2
promoters were determined and aligned to that of B6. Two polymorphisms
were detected, one at position
694 the other at position
674.
In both cases the polymorphisms were A-for-G substitutions, with NOD
and 129 having the A allele and B6 the G allele. In neither case did
the polymorphism occur in a known transcription factor binding site.
To extend the evidence against the presence of functional regulatory allelic variants, the relative levels of transcription of the NOD, B6, and 129 IL2 genes were measured. Total RNA from mixtures of either NOD and NOD.B6 Idd3R450, or NOD.B6 Idd3R450 and NOD.129 Idd3 splenocytes stimulated with ionomycin and PMA was used as the template for RT-PCR amplification with the microsatellite marker D3Mit21. D3Mit21 amplifies a variant CAG repeat in exon 1 of Il2. The relative amount of RNA from each allele was quantified by analyzing the fluorescently labeled PCR products on an ABI 373 automated sequencer and calculating the ratio of the two products. As a control for preferential amplification genomic DNA was amplified with D3Mit21 at the same time. No difference was observed in the steady state level of Il2 RNA from either the NOD or the 129 allele compared with that from the B6 allele (ratio of NOD Il2 RNA to B6 Il2 RNA equals 0.89 ± 0.12 and ratio of 129 Il2 RNA to B6 Il2 RNA equals 1.06 ± 0.07, Fig. 3). Taken together with the sequencing data this suggests that the reduction in diabetes conferred by Idd3-protective alleles is not due to differences in the level of transcription of the Il2 gene.
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DISCUSSION |
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The publication of the results of genome-wide scans for type 1 diabetes susceptibility genes in both the NOD mouse and humans (Todd et
al. 1991
; Ghosh et al. 1993
; Davies et al. 1994
; Hashimoto et al. 1994
;
Concannon et al. 1998
; Mein et al. 1998
) has raised expectations that
within a few years we will know the identity of the genes that
predispose to the disease, have a better understanding of the
pathological mechanisms underlying it, and, as a result, have
identified targets for therapeutic intervention. Although the fine
mapping of diabetes susceptibility genes in humans awaits further
advances in technology, the genome sequence, a catalog of SNPs, and
additional DNA samples from larger patient collections, fine mapping in
the NOD mouse has proved more tractable (Lyons and Wicker 1999
).
A number of experimental strategies for fine mapping quantitative trait
loci (QTL) in mice have been proposed (reviewed in Darvasi 1998
). The
approach we have adopted to fine map Idd loci in the NOD mouse
is one based on the congenic strategy pioneered by Snell in the 1940s
during his work on the H2 locus (Snell 1948
). Over the past 5 years we have described the production of a series of congenic strains
that, initially, confirmed the linkage mapping of Idd3 and,
subsequently, systematically fine mapped it to a 0.35-cM interval
(Wicker et al. 1994
; Lord et al. 1995
; Denny et al. 1997
). In this
study we describe the mapping of the Idd3 locus to a 780-kb
interval. This is the first time congenic mapping has been used to map
a QTL to an interval less than one megabase in size, confirming the
power of the congenic strategy to map loci to intervals amenable to
systematic gene identification. Ultimately, two factors limit the
resolving power of congenic mapping: the density of the genetic map in
the region of interest and the ability to generate and screen large
populations of mice.
The current microsatellite map of the mouse genome is dense enough that variant markers between any two inbred mouse strains can be found approximately every centimorgan. To achieve a greater resolution will in most cases require, as was the case for Idd3, the generation of novel, interval-specific markers, which is a time-consuming process. The production of a dense, evenly-spaced SNP map, similar to that currently being generated in man, would greatly alleviate this problem and speed the mapping process.
The numbers of mice required to reduce a congenic interval to any
particular size can be theoretically determined (Darvasi 1997
). In
theory to reduce an interval from 4 cM to 0.15 cM would require the
screening of ~1300 mice. The screening of this number of mice is a
realistic proposition; in fact in the present study we screened 944 F2 mice to identify the two recombinant events that reduce
the Idd3 interval to 0.15 cM. To achieve a similar level of
resolution (with a 95% confidence interval) using a conventional intercross strategy would require 40,000 F2 progeny to be screened.
An alternative strategy for the fine mapping of QTL to interval sizes
amenable to positional cloning has been described recently (Talbot et
al. 1999
). This approach uses an outbred stock of mice derived >30
years ago from an eight-way cross of inbred mouse strains and in theory
has a 30-fold increase in resolving power when compared to a
conventional F2 cross. However, the general applicability of
this approach to fine mapping QTL is debatable as the ability to detect
QTL is extremely sensitive to the allele distribution among the eight
parental strains at each marker. Moreover, the approach can only map
the QTL into a statistically defined confidence interval. The congenic
approach on the other hand produces a defined interval that must
contain the QTL. Furthermore, the strategy of Talbot et al. (1999)
would be compromised if there were two closely linked but separate loci
in the region under the linkage curve.
Once an interval has been mapped to a size such that markers can be positioned relative to each other with some precision haplotype, mapping becomes a powerful tool to refine the interval size. By identifying chromosome regions shared identical by descent (IBD) it is possible to use ancestral recombination events to provide additional mapping information. One important assumption is that all strains carrying a susceptibility or protective allele at a particular locus carry the same allele. Given the observed degree of allele sharing IBD among the susceptible and resistant strains employed in the present study this assumption is likely to be valid for the Idd3 locus. Given the size of the interval and marker density it is likely that the observed allele sharing is IBD and not merely identical by state (IBS). If the observed sharing were to be IBS it would invalidate this approach. Another assumption is that within the 0.15-cM interval there is only one locus responsible for the Idd3 effect.
The Il2 gene, the only gene currently known to lie within the
145-kb minimal interval, is a very strong candidate for Idd3. Mice that are deficient in the action of IL2, either through the targeted disruption of the Il2 structural gene itself or the
genes encoding the
or
chains of its receptor, develop a
variety of autoimmune diseases (Hunig and Schimpl 1998
). Studies in IL2 and IL2 receptor knockout mice have shown that the cytokine plays a
nonredundant role during Fas-mediated apoptosis of activated T cells,
one of the central processes in immune homeostasis (Van Parijs et al.
1997
; Refaeli et al. 1998
). Variants within the coding or regulatory
elements of the Il2 gene that alter the expression or function
of IL2 would be strong candidates for the Idd3 etiological mutation.
As described in this study we found no evidence of regulatory variants
that alter the expression of the Il2 gene, however, sequence
variation has been described previously in the coding sequence of IL2
allotypes from different mouse strains (Chesnut et al. 1993
; Ghosh et
al. 1993
; Matesanz and Alcina 1996
, 1998
; Denny et al. 1997
). One
sequence variant, a proline/serine substitution at position 6 of the
mature IL2 protein, has been shown to correlate with diabetes
susceptibility or resistance at Idd3. Mouse strains carrying
an Idd3 susceptibility allele, such as NOD or 129, have a
proline, whereas strains carrying an Idd3-protective allele, such as B6, have a serine (Denny et al. 1997
; Podolin et al. 2000
). We
have shown recently that different IL2 allotypes have different glycosylation profiles and that this also correlates with the presence
or absence of proline at position 6 (Podolin et al. 2000
). Although
these glycosylation differences have no effect on the ability of IL2 to
stimulate proliferation of IL2-dependent cell lines (Podolin et al.
2000
) it is conceivable that they may affect the half-life of the
molecule leading to a functional deficiency in circulating IL2. It has
been shown recently that IL2 can bind to heparan sulfate in vivo and
that this bound IL2 is functional in both promoting T-cell activation
and stimulating activation-induced cell death (Wrenshall and Platt
1999
). This binding to heparan sulfate may well be altered by differences in
glycosylation, thereby influencing in vivo availability of IL2.
Using a combination of congenic mapping and haplotype analysis we have narrowed the most likely location of Idd3 to a 145-kb segment of DNA that contains the variant Il2. Although our genetic mapping data does not conclusively prove that the Il2 gene is Idd3, the current lack of evidence for a functional difference between IL2 allotypes from mouse strains with Idd3 susceptibility or protective alleles does not exclude it. Ultimately, the only definitive way to establish whether Il2 is Idd3 will be to construct a "knock-in" mouse in which Il2 from NOD is replaced with the variant gene from a diabetes-resistant mouse such as B6.
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METHODS |
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Animals
NOD/MrkTacfBR (NOD) mice were purchased from Taconic Farms, Inc.
(Germantown, NY). The following congenic strains were used in this
study: NOD.B62 (N11F2-3), NOD.B63 (N11F2-3), NOD.
B6 Idd3R450 (N13F2-3), NOD. B6 Idd3R808 (N13F2-3), and NOD.129 Idd3 (N6F2-4). The derivation of congenic strains NOD.B62, NOD.B63, NOD. B6 Idd3R450, and
NOD.129 Idd3 has been described previously (Lord et al. 1995
;
Denny et al. 1997
; Podolin et al. 2000
). The NOD. B6 Idd3R808
congenic strain was developed by backcrossing NOD.B62 to NOD
and intercrossing the resulting F1 progeny. The F2
progeny were genotyped with markers within the Idd3 interval
and appropriate recombinants backcrossed to NOD. Suitable F1
progeny were intercrossed to produce homozygous animals. The congenic
strain was maintained by brother-sister mating. All mice were housed
under sterile, specific pathogen-free conditions.
Assessment of Diabetes
Mice were monitored for the development of diabetes as described
previously (Wicker et al. 1994
).
STS Mapping and Isolation of Novel Microsatellites
Mouse BAC (Research Genetics) and P1 Imperial Cancer Research
Foundation libraries were screened by PCR according to the suppliers' instructions. Clone insert ends were rescued by vectorette PCR and STSs
developed as described previously (Denny et al. 1997
). Novel
microsatellite markers were isolated from P1 clones using a PCR-based
vectorette approach as described previously (Merriman et al. 1997
).
Primer sequences for the microsatellite and STS markers described in
this paper are available on the web at http://diesel.cimr.cam.ac.uk/todd.
PCR Analysis
STS, fluorescent, and nonfluorescent PCR reactions were performed
and analysed as described previously (Denny et al. 1997
).
Restriction Enzyme Mapping of BAC Clones
BAC DNA was prepared using a standard alkaline-lysis protocol.
Aliquots of 1 µg of BAC DNA were digested for 1 hr at 37°C with
10 units of either NotIA or SalI. Following digestion,
DNA fragments were separated by pulsed-field gel electrophoresis. Gels
were run at 200 V for 15.2 hr at 14°C with pulse times ramped from
0.2 sec to 21.8 sec. Following electrophoresis and visualization by
ethidium bromide staining, DNA fragments were transferred to nylon
filters by capillary action and fixed by UV cross-linking. Filters were
hybridized with [
-32P]-labeled oligonucleotides.
Il2 Promoter Sequencing
The cosmid mC1h5 was sequenced using a random shotgun approach
essentially as described in Bankier et al (1987)
. Sequence data was
assembled using the program GAP4 (Bonfield et al. 1995
). This sequence
data has been submitted to GenBank and assigned the accession number
AF19596. Two sets of PCR primers were designed to amplify the
Il2 promoter. IL2.Pro1 (5'-ATGAAAGTGCAACTAGAGCAC-3') and IL2.Pro3 (5'-GAGACACAAAAGTAACTCATG-3') give a 444-bp
product spanning nucleotides 3773-4217 of the mC1h5 sequence and
IL2.Pro2 (5'-CTTTTCATCTATCTCCTCTTGC-3') and IL2.Pro4
(5'-GACAAGGAGCACAAGTGTCAAT-3') amplify a 500-bp product
spanning nucleotides 4115-4615. Following amplification, PCR products
were gel purified and then sequenced, with the amplification primers,
using an ABI Prism dye terminator cycle sequencing kit (PE Biosystems,
Warrington, UK) according to the manufacturer's instructions. Sequence
data for the NOD and 129 Il2 promoter regions have been
submitted to GenBank and assigned the accession numbers AF19594 and
AF19595, respectively.
Generation of IL2-Containing Splenocyte Cultures
One million mouse spleen cells were stimulated with 10 ng/ml of PMA
and 400 ng/ml of ionomycin (Calbiochem, San Diego, CA) for 4 hr as
described previously (Chen et al. 1994
).
Quantification of Il2 mRNA Levels
Total RNA was extracted from 4 × 107 splenocytes
stimulated with ionomycin and PMA as described above using an RNeasy
RNA extraction kit (Qiagen, Crawley, UK) following the manufacturer's
instructions. First-strand cDNA was synthesized from 1 µg of total
RNA using a M-MLV H
RT cDNA synthesis kit (Life Technologies,
Glasgow, UK) according to the manufacturers instructions. The cDNA was
diluted 1/100 and 1 µl was used as template for amplification with
D3Mit21 (primer sequences for this microsatellite marker are
available on the web at
http://www-genome.wi.mit.edu/cgi-bin/mouse/index). Following amplification the fluorescently labeled PCR products were analyzed on
an ABI373 automated sequencer as described previously (Denny et al.
1997
). The amount of Il2 mRNA was quantified using Genotyper software (PE Biosytems).
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ACKNOWLEDGMENTS |
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This work was funded by grants from the UK Medical Research Council, the British Diabetic Association, and the Wellcome Trust.
The publication costs of this article were defrayed in part by payment of page charges. This article must therefore be hereby marked "advertisement" in accordance with 18 USC section 1734 solely to indicate this fact.
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FOOTNOTES |
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1 Present address: MRC Mouse Genome Centre and Mammalian Genetics Unit, Harwell, Oxfordshire, OX11 0RD, UK.
4 Corresponding author.
E-MAIL paul.lyons{at}cimr.cam.ac.uk; FAX +44 1223 762102.
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V. Sancho-Shimizu, R. Khan, S. Mostowy, L. Lariviere, R. Wilkinson, N. Riendeau, M. Behr, and D. Malo Molecular Genetic Analysis of Two Loci (Ity2 and Ity3) Involved in the Host Response to Infection With Salmonella Typhimurium Using Congenic Mice and Expression Profiling Genetics, October 1, 2007; 177(2): 1125 - 1139. [Abstract] [Full Text] [PDF] |
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P. D. Holler, T. Yamagata, W. Jiang, M. Feuerer, C. Benoist, and D. Mathis The same genomic region conditions clonal deletion and clonal deviation to the CD8{alpha}{alpha} and regulatory T cell lineages in NOD versus C57BL/6 mice PNAS, April 24, 2007; 104(17): 7187 - 7192. [Abstract] [Full Text] [PDF] |
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T. Brusko, C. Wasserfall, K. McGrail, R. Schatz, H. L. Viener, D. Schatz, M. Haller, J. Rockell, P. Gottlieb, M. Clare-Salzler, et al. No Alterations in the Frequency of FOXP3+ Regulatory T-Cells in Type 1 Diabetes Diabetes, March 1, 2007; 56(3): 604 - 612. [Abstract] [Full Text] [PDF] |
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S. M. Clee and A. D. Attie The Genetic Landscape of Type 2 Diabetes in Mice Endocr. Rev., February 1, 2007; 28(1): 48 - 83. [Abstract] [Full Text] [PDF] |
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J. Irie, Y. Wu, K. Kachapati, R. S. Mittler, and W. M. Ridgway Modulating Protective and Pathogenic CD4+ Subsets via CD137 in Type 1 Diabetes Diabetes, January 1, 2007; 56(1): 186 - 196. [Abstract] [Full Text] [PDF] |
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J. H. Kim, T. P Stewart, M. Soltani-Bejnood, L. Wang, J. M Fortuna, O. A Mostafa, N. Moustaid-Moussa, A. M Shoieb, M. F McEntee, Y. Wang, et al. Phenotypic characterization of polygenic type 2 diabetes in TALLYHO/JngJ mice. J. Endocrinol., November 1, 2006; 191(2): 437 - 446. [Abstract] [Full Text] [PDF] |
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G. Chamberlain, M. Wallberg, D. Rainbow, K. Hunter, L. S. Wicker, and E. A. Green A 20-Mb Region of Chromosome 4 Controls TNF-{alpha}-Mediated CD8+ T Cell Aggression Toward beta Cells in Type 1 Diabetes J. Immunol., October 15, 2006; 177(8): 5105 - 5114. [Abstract] [Full Text] [PDF] |
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K. ASANO, H. IKEGAMI, T. FUJISAWA, Y. KAWABATA, S. NOSO, Y. HIROMINE, and T. OGIHARA The Gene for Human IL-21 and Genetic Susceptibility to Type 1 Diabetes in the Japanese Ann. N.Y. Acad. Sci., October 1, 2006; 1079(1): 47 - 50. [Abstract] [Full Text] [PDF] |
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H. Waldner, R. A. Sobel, N. Price, and V. K. Kuchroo The Autoimmune Diabetes Locus Idd9 Regulates Development of Type 1 Diabetes by Affecting the Homing of Islet-Specific T Cells J. Immunol., May 1, 2006; 176(9): 5455 - 5462. [Abstract] [Full Text] [PDF] |
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M.-P. Sanchez, J. Riquet, N. Iannuccelli, J. Gogue, Y. Billon, O. Demeure, J.-C. Caritez, G. Burgaud, K. Feve, M. Bonnet, et al. Effects of quantitative trait loci on chromosomes 1, 2, 4, and 7 on growth, carcass, and meat quality traits in backcross Meishan x Large White pigs J Anim Sci, March 1, 2006; 84(3): 526 - 537. [Abstract] [Full Text] [PDF] |
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M. Lundholm, V. Motta, A. Lofgren-Burstrom, N. Duarte, M.-L. Bergman, S. Mayans, and D. Holmberg Defective Induction of CTLA-4 in the NOD Mouse Is Controlled by the NOD Allele of Idd3/IL-2 and a Novel Locus (Ctex) Telomeric on Chromosome 1 Diabetes, February 1, 2006; 55(2): 538 - 544. [Abstract] [Full Text] [PDF] |
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A. Ueno, S. Cho, L. Cheng, Z. Wang, B. Wang, and Y. Yang Diabetes Resistance/Susceptibility in T Cells of Nonobese Diabetic Mice Conferred by MHC and MHC-Linked Genes J. Immunol., October 15, 2005; 175(8): 5240 - 5247. [Abstract] [Full Text] [PDF] |
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W. Jiang, M. S. Anderson, R. Bronson, D. Mathis, and C. Benoist Modifier loci condition autoimmunity provoked by Aire deficiency J. Exp. Med., September 19, 2005; 202(6): 805 - 815. [Abstract] [Full Text] [PDF] |
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X. Martinez, H. T. C. Kreuwel, W. L. Redmond, R. Trenney, K. Hunter, H. Rosen, N. Sarvetnick, L. S. Wicker, and L. A. Sherman CD8+ T Cell Tolerance in Nonobese Diabetic Mice Is Restored by Insulin-Dependent Diabetes Resistance Alleles J. Immunol., August 1, 2005; 175(3): 1677 - 1685. [Abstract] [Full Text] [PDF] |
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N. C. Jerez-Timaure, E. J. Eisen, and D. Pomp Fine mapping of a QTL region with large effects on growth and fatness on mouse chromosome 2 Physiol Genomics, May 11, 2005; 21(3): 411 - 422. [Abstract] [Full Text] [PDF] |
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P. M. Chilton, F. Rezzoug, M. Z. Ratajczak, I. Fugier-Vivier, J. Ratajczak, M. Kucia, Y. Huang, M. K. Tanner, and S. T. Ildstad Hematopoietic stem cells from NOD mice exhibit autonomous behavior and a competitive advantage in allogeneic recipients Blood, March |