![[Feedback]](/icons/banner/feedbackACT.gif){kind=icon}
![[For Subscribers]](/icons/banner/subscriberACT.gif){kind=icon}
![[Archive]](/icons/banner/archiveACT.gif){kind=icon}
![[Search]](/icons/banner/searchACT.gif){kind=icon}
![[Contents]](/icons/banner/tocACT.gif){kind=icon}
|
|
|
|
|
||
|
Vol. 9, Issue 9, 868-877, September 1999
RESOURCE
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
|
|
 |
|
  S. Hazelhurst, W. Hide, Z. Liptak, R. Nogueira, and R. Starfield An overview of the wcd EST clustering tool Bioinformatics, July 1, 2008; 24(13): 1542 - 1546. [Abstract] [PDF]
|
|
|
|
 |
|
 N. Karaiskou, L. Buggiotti, E. Leder, and C. R. Primmer High Degree of Transferability of 86 Newly Developed Zebra Finch EST-Linked Microsatellite Markers in 8 Bird Species J. Hered., June 26, 2008; (2008) esn052v1. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 D. Palakodeti, M. Smielewska, Y.-C. Lu, G. W. Yeo, and B. R. Graveley The PIWI proteins SMEDWI-2 and SMEDWI-3 are required for stem cell function and piRNA expression in planarians RNA, June 1, 2008; 14(6): 1174 - 1186. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 R. M. Freeman JR., M. Wu, M-M. Cordonnier-Pratt, L. H. Pratt, C. E. Gruber, M. Smith, E. S. Lander, N. Stange-Thomann, C. J. Lowe, J. Gerhart, et al. cDNA Sequences for Transcription Factors and Signaling Proteins of the Hemichordate Saccoglossus kowalevskii: Efficacy of the Expressed Sequence Tag (EST) Approach for Evolutionary and Developmental Studies of a New Organism Biol. Bull., June 1, 2008; 214(3): 284 - 302. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 Q. Xu, C.-H. C. Cheng, P. Hu, H. Ye, Z. Chen, L. Cao, L. Chen, Y. Shen, and L. Chen Adaptive Evolution of Hepcidin Genes in Antarctic Notothenioid Fishes Mol. Biol. Evol., June 1, 2008; 25(6): 1099 - 1112. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 J. Stapley, T. R. Birkhead, T. Burke, and J. Slate A Linkage Map of the Zebra Finch Taeniopygia guttata Provides New Insights Into Avian Genome Evolution Genetics, May 1, 2008; 179(1): 651 - 667. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
G. Denisov, B. Walenz, A. L. Halpern, J. Miller, N. Axelrod, S. Levy, and G. Sutton Consensus generation and variant detection by Celera Assembler Bioinformatics, April 15, 2008; 24(8): 1035 - 1040. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 J. Kleemann, H. Takahara, K. Stuber, and R. O'Connell Identification of soluble secreted proteins from appressoria of Colletotrichum higginsianum by analysis of expressed sequence tags Microbiology, April 1, 2008; 154(4): 1204 - 1217. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 J. Schumacher, I. F. de Larrinoa, and B. Tudzynski Calcineurin-Responsive Zinc Finger Transcription Factor CRZ1 of Botrytis cinerea Is Required for Growth, Development, and Full Virulence on Bean Plants Eukaryot. Cell, April 1, 2008; 7(4): 584 - 601. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
K. Malde The effect of sequence quality on sequence alignment Bioinformatics, April 1, 2008; 24(7): 897 - 900. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
I. Ruiz-Trillo, A. J. Roger, G. Burger, M. W. Gray, and B. F. Lang A Phylogenomic Investigation into the Origin of Metazoa Mol. Biol. Evol., April 1, 2008; 25(4): 664 - 672. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 G. Palacios, J. Druce, L. Du, T. Tran, C. Birch, T. Briese, S. Conlan, P.-L. Quan, J. Hui, J. Marshall, et al. A New Arenavirus in a Cluster of Fatal Transplant-Associated Diseases N. Engl. J. Med., March 6, 2008; 358(10): 991 - 998. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 J. L. Copa-Patino, M. Arenas, J. Soliveri, C. Sanchez-Porro, and A. Ventosa Algoriphagus hitonicola sp. nov., isolated from an athalassohaline lagoon Int J Syst Evol Microbiol, February 1, 2008; 58(2): 424 - 428. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 S. M.C. Robb, E. Ross, and A. S. Alvarado SmedGD: the Schmidtea mediterranea genome database Nucleic Acids Res., January 11, 2008; 36(suppl_1): D599 - D606. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
J. Duvick, A. Fu, U. Muppirala, M. Sabharwal, M. D. Wilkerson, C. J. Lawrence, C. Lushbough, and V. Brendel PlantGDB: a resource for comparative plant genomics Nucleic Acids Res., January 11, 2008; 36(suppl_1): D959 - D965. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
S. Jung, M. Staton, T. Lee, A. Blenda, R. Svancara, A. Abbott, and D. Main GDR (Genome Database for Rosaceae): integrated web-database for Rosaceae genomics and genetics data Nucleic Acids Res., January 11, 2008; 36(suppl_1): D1034 - D1040. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 J. Arenas, A. Abel, S. Sanchez, J. Marzoa, S. Berron, P. van der Ley, M.-T. Criado, and C. M. Ferreiros A cross-reactive neisserial antigen encoded by the NMB0035 locus shows high sequence conservation but variable surface accessibility J. Med. Microbiol., January 1, 2008; 57(1): 80 - 87. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 B. L. Cantarel, I. Korf, S. M.C. Robb, G. Parra, E. Ross, B. Moore, C. Holt, A. Sanchez Alvarado, and M. Yandell MAKER: An easy-to-use annotation pipeline designed for emerging model organism genomes Genome Res., January 1, 2008; 18(1): 188 - 196. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 J. Nagel, L. K. Culley, Y. Lu, E. Liu, P. D. Matthews, J. F. Stevens, and J. E. Page EST Analysis of Hop Glandular Trichomes Identifies an O-Methyltransferase That Catalyzes the Biosynthesis of Xanthohumol PLANT CELL, January 1, 2008; 20(1): 186 - 200. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 A. L. Eveland, D. R. McCarty, and K. E. Koch Transcript Profiling by 3'-Untranslated Region Sequencing Resolves Expression of Gene Families Plant Physiology, January 1, 2008; 146(1): 32 - 44. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
W. Li, L. Huang, and B. S. Gill Recurrent Deletions of Puroindoline Genes at the Grain Hardness Locus in Four Independent Lineages of Polyploid Wheat1,[W],[OA] Plant Physiology, January 1, 2008; 146(1): 200 - 212. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 J. J. Loor, R. E. Everts, M. Bionaz, H. M. Dann, D. E. Morin, R. Oliveira, S. L. Rodriguez-Zas, J. K. Drackley, and H. A. Lewin Nutrition-induced ketosis alters metabolic and signaling gene networks in liver of periparturient dairy cows Physiol Genomics, December 19, 2007; 32(1): 105 - 116. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
M. Costa, C. L. Borges, A. M. Bailao, G. V. Meirelles, Y. A. Mendonca, S. F. I. M. Dantas, F. P. de Faria, M. S. S. Felipe, E. E. W. I. Molinari-Madlum, M. J. S. Mendes-Giannini, et al. Transcriptome profiling of Paracoccidioides brasiliensis yeast-phase cells recovered from infected mice brings new insights into fungal response upon host interaction Microbiology, December 1, 2007; 153(12): 4194 - 4207. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
J. C. Dohm, C. Lottaz, T. Borodina, and H. Himmelbauer SHARCGS, a fast and highly accurate short-read assembly algorithm for de novo genomic sequencing Genome Res., November 1, 2007; 17(11): 1697 - 1706. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
J. K. Hane, R. G.T. Lowe, P. S. Solomon, K.-C. Tan, C. L. Schoch, J. W. Spatafora, P. W. Crous, C. Kodira, B. W. Birren, J. E. Galagan, et al. Dothideomycete Plant Interactions Illuminated by Genome Sequencing and EST Analysis of the Wheat Pathogen Stagonospora nodorum PLANT CELL, November 1, 2007; 19(11): 3347 - 3368. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
C. Rojas-Cartagena, P. Ortiz-Pineda, F. Ramirez-Gomez, E. C. Suarez-Castillo, V. Matos-Cruz, C. Rodriguez, H. Ortiz-Zuazaga, and J. E. Garcia-Arraras Distinct profiles of expressed sequence tags during intestinal regeneration in the sea cucumber Holothuria glaberrima Physiol Genomics, October 19, 2007; 31(2): 203 - 215. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 M. Kotsyfakis, S. Karim, J. F. Andersen, T. N. Mather, and J. M. C. Ribeiro Selective Cysteine Protease Inhibition Contributes to Blood-feeding Success of the Tick Ixodes scapularis J. Biol. Chem., October 5, 2007; 282(40): 29256 - 29263. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
J. Kapteyn, A. V. Qualley, Z. Xie, E. Fridman, N. Dudareva, and D. R. Gang Evolution of Cinnamate/p-Coumarate Carboxyl Methyltransferases and Their Role in the Biosynthesis of Methylcinnamate PLANT CELL, October 1, 2007; 19(10): 3212 - 3229. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
O. M. Keane, K. G. Dodds, A. M. Crawford, and J. C. McEwan Transcriptional profiling of Ovis aries identifies Ovar-DQA1 allele frequency differences between nematode-resistant and susceptible selection lines Physiol Genomics, August 20, 2007; 30(3): 253 - 261. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
R. A. C. Mitchell, N. Castells-Brooke, J. Taubert, P. J. Verrier, D. J. Leader, and C. J. Rawlings Wheat Estimated Transcript Server (WhETS): a tool to provide best estimate of hexaploid wheat transcript sequence Nucleic Acids Res., July 13, 2007; 35(suppl_2): W148 - W151. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
B. Lee, T. Hong, S. J. Byun, T. Woo, and Y. J. Choi ESTpass: a web-based server for processing and annotating expressed sequence tag (EST) sequences Nucleic Acids Res., July 13, 2007; 35(suppl_2): W159 - W162. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
S. H. Nagaraj, N. Deshpande, R. B. Gasser, and S. Ranganathan ESTExplorer: an expressed sequence tag (EST) assembly and annotation platform Nucleic Acids Res., July 13, 2007; 35(suppl_2): W143 - W147. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
F. Panitz, H. Stengaard, H. Hornshoj, J. Gorodkin, J. Hedegaard, S. Cirera, B. Thomsen, L. B. Madsen, A. Hoj, R. K. Vingborg, et al. SNP mining porcine ESTs with MAVIANT, a novel tool for SNP evaluation and annotation Bioinformatics, July 1, 2007; 23(13): i387 - i391. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 A. S. Gesteira, F. Micheli, N. Carels, A. C. Da Silva, K. P. Gramacho, I. Schuster, J. N. Macedo, G. A. G. Pereira, and J. C. M. Cascardo Comparative Analysis of Expressed Genes from Cacao Meristems Infected by Moniliophthora perniciosa Ann. Bot., July 1, 2007; 100(1): 129 - 140. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
E. A. Nash, A. C. Barbrook, R. K. Edwards-Stuart, K. Bernhardt, C. J. Howe, and R. E. R. Nisbet Organization of the Mitochondrial Genome in the Dinoflagellate Amphidinium carterae Mol. Biol. Evol., July 1, 2007; 24(7): 1528 - 1536. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
R. C. Georg and S. L. Gomes Transcriptome Analysis in Response to Heat Shock and Cadmium in the Aquatic Fungus Blastocladiella emersonii Eukaryot. Cell, June 1, 2007; 6(6): 1053 - 1062. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 K. Rousseau, S. Kirkham, S. McKane, R. Newton, P. Clegg, and D. J. Thornton Muc5b and Muc5ac are the major oligomeric mucins in equine airway mucus Am J Physiol Lung Cell Mol Physiol, June 1, 2007; 292(6): L1396 - L1404. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
M. J. Axtell, J. A. Snyder, and D. P. Bartel Common Functions for Diverse Small RNAs of Land Plants PLANT CELL, June 1, 2007; 19(6): 1750 - 1769. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 B. Zhou, Y. Li, Z. Xu, H. Yan, S. Homma, and S. Kawabata Ultraviolet A-specific induction of anthocyanin biosynthesis in the swollen hypocotyls of turnip (Brassica rapa) J. Exp. Bot., May 1, 2007; 58(7): 1771 - 1781. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
A. P.M. Weber, K. L. Weber, K. Carr, C. Wilkerson, and J. B. Ohlrogge Sampling the Arabidopsis Transcriptome with Massively Parallel Pyrosequencing Plant Physiology, May 1, 2007; 144(1): 32 - 42. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
A. Caprera, B. Lazzari, A. Stella, I. Merelli, A. R. Caetano, and P. Mariani GoSh: a web-based database for goat and sheep EST sequences Bioinformatics, April 15, 2007; 23(8): 1043 - 1045. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
J. Robalino, J. S. Almeida, D. McKillen, J. Colglazier, H. F. Trent III, Y. A. Chen, M. E. T. Peck, C. L. Browdy, R. W. Chapman, G. W. Warr, et al. Insights into the immune transcriptome of the shrimp Litopenaeus vannamei: tissue-specific expression profiles and transcriptomic responses to immune challenge Physiol Genomics, March 14, 2007; 29(1): 44 - 56. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
A. O. Avrova, S. C. Whisson, L. Pritchard, E. Venter, S. De Luca, I. Hein, and P. R. J. Birch A novel non-protein-coding infection-specific gene family is clustered throughout the genome of Phytophthora infestans Microbiology, March 1, 2007; 153(3): 747 - 759. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
L. Mazzitelli, R. D. Hancock, S. Haupt, P. G. Walker, S. D. A. Pont, J. McNicol, L. Cardle, J. Morris, R. Viola, R. Brennan, et al. Co-ordinated gene expression during phases of dormancy release in raspberry (Rubus idaeus L.) buds J. Exp. Bot., March 1, 2007; 58(5): 1035 - 1045. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 G. R. Risatti, L. G. Holinka, I. Fernandez Sainz, C. Carrillo, Z. Lu, and M. V. Borca N-Linked Glycosylation Status of Classical Swine Fever Virus Strain Brescia E2 Glycoprotein Influences Virulence in Swine J. Virol., January 15, 2007; 81(2): 924 - 933. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
K. L. Childs, J. P. Hamilton, W. Zhu, E. Ly, F. Cheung, H. Wu, P. D. Rabinowicz, C. D. Town, C. R. Buell, and A. P. Chan The TIGR Plant Transcript Assemblies database Nucleic Acids Res., January 12, 2007; 35(suppl_1): D846 - D851. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 S. H. Nagaraj, R. B. Gasser, and S. Ranganathan A hitchhiker's guide to expressed sequence tag (EST) analysis Brief Bioinform, January 1, 2007; 8(1): 6 - 21. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
S. J. Emrich, W. B. Barbazuk, L. Li, and P. S. Schnable Gene discovery and annotation using LCM-454 transcriptome sequencing Genome Res., January 1, 2007; 17(1): 69 - 73. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
M. Gorantla, P. Babu, V. Reddy Lachagari, A. Reddy, R. Wusirika, J. L. Bennetzen, and A. R. Reddy Identification of stress-responsive genes in an indica rice (Oryza sativa L.) using ESTs generated from drought-stressed seedlings J. Exp. Bot., January 1, 2007; 58(2): 253 - 265. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
S. J. Emrich, L. Li, T.-J. Wen, M. D. Yandeau-Nelson, Y. Fu, L. Guo, H.-H. Chou, S. Aluru, D. A. Ashlock, and P. S. Schnable Nearly Identical Paralogs: Implications for Maize (Zea mays L.) Genome Evolution Genetics, January 1, 2007; 175(1): 429 - 439. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
S. G. Ralph, J.W. Hudgins, S. Jancsik, V. R. Franceschi, and J. Bohlmann Aminocyclopropane Carboxylic Acid Synthase Is a Regulated Step in Ethylene-Dependent Induced Conifer Defense. Full-Length cDNA Cloning of a Multigene Family, Differential Constitutive, and Wound- and Insect-Induced Expression, and Cellular and Subcellular Localization in Spruce and Douglas Fir Plant Physiology, January 1, 2007; 143(1): 410 - 424. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
G. Haberer, M. T. Mader, P. Kosarev, M. Spannagl, L. Yang, and K. F.X. Mayer Large-Scale cis-Element Detection by Analysis of Correlated Expression and Sequence Conservation between Arabidopsis and Brassica oleracea Plant Physiology, December 1, 2006; 142(4): 1589 - 1602. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 Y. Lee, T. Ise, D. Ha, A. Saint Fleur, Y. Hahn, X.-F. Liu, S. Nagata, B. Lee, T. K. Bera, and I. Pastan Evolution and expression of chimeric POTE-actin genes in the human genome PNAS, November 21, 2006; 103(47): 17885 - 17890. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
B. Brzezicha, M. Schmidt, I. Makalowska, A. Jarmolowski, J. Pienkowska, and Z. Szweykowska-Kulinska Identification of human tRNA:m5C methyltransferase catalysing intron-dependent m5C formation in the first position of the anticodon of the Formula Nucleic Acids Res., November 6, 2006; 34(20): 6034 - 6043. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
S. Foret and R. Maleszka Function and evolution of a gene family encoding odorant binding-like proteins in a social insect, the honey bee (Apis mellifera) Genome Res., November 1, 2006; 16(11): 1404 - 1413. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
J. Savard, D. Tautz, S. Richards, G. M. Weinstock, R. A. Gibbs, J. H. Werren, H. Tettelin, and M. J. Lercher Phylogenomic analysis reveals bees and wasps (Hymenoptera) at the base of the radiation of Holometabolous insects Genome Res., November 1, 2006; 16(11): 1334 - 1338. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
J. D. Kulman, J. E. Harris, N. Nakazawa, M. Ogasawara, M. Satake, and E. W. Davie Vitamin K-dependent proteins in Ciona intestinalis, a basal chordate lacking a blood coagulation cascade PNAS, October 24, 2006; 103(43): 15794 - 15799. [Abstract] [Full Text] [PDF]
|
|
