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Vol. 9, Issue 1, 27-43, January 1999
RESEARCH
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  K. Fujimitsu, M. Su'etsugu, Y. Yamaguchi, K. Mazda, N. Fu, H. Kawakami, and T. Katayama Modes of Overinitiation, dnaA Gene Expression, and Inhibition of Cell Division in a Novel Cold-Sensitive hda Mutant of Escherichia coli J. Bacteriol., August 1, 2008; 190(15): 5368 - 5381. [Abstract] [Full Text] [PDF]
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 D. Ducat, S.-i. Kawaguchi, H. Liu, J. R. Yates III, and Y. Zheng Regulation of Microtubule Assembly and Organization in Mitosis by the AAA+ ATPase Pontin Mol. Biol. Cell, July 1, 2008; 19(7): 3097 - 3110. [Abstract] [Full Text] [PDF]
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 A. Bhoumik, N. Singha, M. J. O'Connell, and Z. A. Ronai Regulation of TIP60 by ATF2 Modulates ATM Activation J. Biol. Chem., June 20, 2008; 283(25): 17605 - 17614. [Abstract] [Full Text] [PDF]
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 D. Kressler, D. Roser, B. Pertschy, and E. Hurt The AAA ATPase Rix7 powers progression of ribosome biogenesis by stripping Nsa1 from pre-60S particles J. Cell Biol., June 16, 2008; 181(6): 935 - 944. [Abstract] [Full Text] [PDF]
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 A. Filloux, A. Hachani, and S. Bleves The bacterial type VI secretion machine: yet another player for protein transport across membranes Microbiology, June 1, 2008; 154(6): 1570 - 1583. [Abstract] [Full Text] [PDF]
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 J. W. Hewett, F. C. Nery, B. Niland, P. Ge, P. Tan, P. Hadwiger, B. A. Tannous, D. W.Y. Sah, and X. O. Breakefield siRNA knock-down of mutant torsinA restores processing through secretory pathway in DYT1 dystonia cells Hum. Mol. Genet., May 15, 2008; 17(10): 1436 - 1445. [Abstract] [Full Text] [PDF]
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 K. Kikushima and R. Kamiya Clockwise Translocation of Microtubules by Flagellar Inner-Arm Dyneins In Vitro Biophys. J., May 15, 2008; 94(10): 4014 - 4019. [Abstract] [Full Text] [PDF]
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 A. R. Portis Jr, C. Li, D. Wang, and M. E. Salvucci Regulation of Rubisco activase and its interaction with Rubisco J. Exp. Bot., May 1, 2008; 59(7): 1597 - 1604. [Abstract] [Full Text] [PDF]
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I. Andersson Catalysis and regulation in Rubisco J. Exp. Bot., May 1, 2008; 59(7): 1555 - 1568. [Abstract] [Full Text] [PDF]
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K. R. Marshall-Batty and H. Nakai Activation of a Dormant ClpX Recognition Motif of Bacteriophage Mu Repressor by Inducing High Local Flexibility J. Biol. Chem., April 4, 2008; 283(14): 9060 - 9070. [Abstract] [Full Text] [PDF]
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J. Tomida, Y. Masuda, H. Hiroaki, T. Ishikawa, I. Song, T. Tsurimoto, S. Tateishi, T. Shiomi, Y. Kamei, J. Kim, et al. DNA Damage-induced Ubiquitylation of RFC2 Subunit of Replication Factor C Complex J. Biol. Chem., April 4, 2008; 283(14): 9071 - 9079. [Abstract] [Full Text] [PDF]
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H. Kage, A. Takaya, M. Ohya, and T. Yamamoto Coordinated Regulation of Expression of Salmonella Pathogenicity Island 1 and Flagellar Type III Secretion Systems by ATP-Dependent ClpXP Protease J. Bacteriol., April 1, 2008; 190(7): 2470 - 2478. [Abstract] [Full Text] [PDF]
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S. Ozaki, H. Kawakami, K. Nakamura, N. Fujikawa, W. Kagawa, S.-Y. Park, S. Yokoyama, H. Kurumizaka, and T. Katayama A Common Mechanism for the ATP-DnaA-dependent Formation of Open Complexes at the Replication Origin J. Biol. Chem., March 28, 2008; 283(13): 8351 - 8362. [Abstract] [Full Text] [PDF]
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A. Granata, R. Watson, L. M. Collinson, G. Schiavo, and T. T. Warner The Dystonia-associated Protein TorsinA Modulates Synaptic Vesicle Recycling J. Biol. Chem., March 21, 2008; 283(12): 7568 - 7579. [Abstract] [Full Text] [PDF]
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 L. R. Borlado and J. Mendez CDC6: from DNA replication to cell cycle checkpoints and oncogenesis Carcinogenesis, February 1, 2008; 29(2): 237 - 243. [Abstract] [Full Text] [PDF]
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K. Siddiqui and B. Stillman ATP-dependent Assembly of the Human Origin Recognition Complex J. Biol. Chem., November 2, 2007; 282(44): 32370 - 32383. [Abstract] [Full Text] [PDF]
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 J. K. NGO and K. J. A. DAVIES Importance of the Lon Protease in Mitochondrial Maintenance and the Significance of Declining Lon in Aging Ann. N.Y. Acad. Sci., November 1, 2007; 1119(1): 78 - 87. [Abstract] [Full Text] [PDF]
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 K. Imamula, T. Kon, R. Ohkura, and K. Sutoh The coordination of cyclic microtubule association/dissociation and tail swing of cytoplasmic dynein PNAS, October 9, 2007; 104(41): 16134 - 16139. [Abstract] [Full Text] [PDF]
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Y. Li, K. Kurokawa, L. Reutimann, H. Mizumura, M. Matsuo, and K. Sekimizu dnaB and dnaI temperature-sensitive mutants of Staphylococcus aureus: evidence for involvement of DnaB and DnaI in synchrony regulation of chromosome replication Microbiology, October 1, 2007; 153(10): 3370 - 3379. [Abstract] [Full Text] [PDF]
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H.-S. Jun, M. Qi, J. Gong, E. E. Egbosimba, and C. W. Forsberg Outer Membrane Proteins of Fibrobacter succinogenes with Potential Roles in Adhesion to Cellulose and in Cellulose Digestion J. Bacteriol., October 1, 2007; 189(19): 6806 - 6815. [Abstract] [Full Text] [PDF]
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 I. Kurek, T. K. Chang, S. M. Bertain, A. Madrigal, L. Liu, M. W. Lassner, and G. Zhu Enhanced Thermostability of Arabidopsis Rubisco Activase Improves Photosynthesis and Growth Rates under Moderate Heat Stress PLANT CELL, October 1, 2007; 19(10): 3230 - 3241. [Abstract] [Full Text] [PDF]
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 C. R. Wood, R. Hard, and T. M. Hennessey Targeted gene disruption of dynein heavy chain 7 of Tetrahymena thermophila results in altered ciliary waveform and reduced swim speed J. Cell Sci., September 1, 2007; 120(17): 3075 - 3085. [Abstract] [Full Text] [PDF]
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 M. Gaudier, B. S. Schuwirth, S. L. Westcott, and D. B. Wigley Structural Basis of DNA Replication Origin Recognition by an ORC Protein Science, August 31, 2007; 317(5842): 1213 - 1216. [Abstract] [Full Text] [PDF]
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C.-J. Shih and M.-C. Lai Analysis of the AAA+ chaperone clpB gene and stress-response expression in the halophilic methanogenic archaeon Methanohalophilus portucalensis Microbiology, August 1, 2007; 153(8): 2572 - 2583. [Abstract] [Full Text] [PDF]
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G. Shalom, J. G. Shaw, and M. S. Thomas In vivo expression technology identifies a type VI secretion system locus in Burkholderia pseudomallei that is induced upon invasion of macrophages Microbiology, August 1, 2007; 153(8): 2689 - 2699. [Abstract] [Full Text] [PDF]
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 R. W. Shultz, V. M. Tatineni, L. Hanley-Bowdoin, and W. F. Thompson Genome-Wide Analysis of the Core DNA Replication Machinery in the Higher Plants Arabidopsis and Rice Plant Physiology, August 1, 2007; 144(4): 1697 - 1714. [Abstract] [Full Text] [PDF]
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T. Mogami, T. Kon, K. Ito, and K. Sutoh Kinetic Characterization of Tail Swing Steps in the ATPase Cycle of Dictyostelium Cytoplasmic Dynein J. Biol. Chem., July 27, 2007; 282(30): 21639 - 21644. [Abstract] [Full Text] [PDF]
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Y. Shiomi, C. Masutani, F. Hanaoka, H. Kimura, and T. Tsurimoto A Second Proliferating Cell Nuclear Antigen Loader Complex, Ctf18-Replication Factor C, Stimulates DNA Polymerase {eta} Activity J. Biol. Chem., July 20, 2007; 282(29): 20906 - 20914. [Abstract] [Full Text] [PDF]
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A. Ikegami, N. Yoshimura, K. Motohashi, S. Takahashi, P. G. N. Romano, T. Hisabori, K.-i. Takamiya, and T. Masuda The CHLI1 Subunit of Arabidopsis thaliana Magnesium Chelatase Is a Target Protein of the Chloroplast Thioredoxin J. Biol. Chem., July 6, 2007; 282(27): 19282 - 19291. [Abstract] [Full Text] [PDF]
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 A. Ekman, K. Hokynar, L. Kakkola, K. Kantola, L. Hedman, H. Bonden, M. Gessner, C. Aberham, P. Norja, S. Miettinen, et al. Biological and Immunological Relations among Human Parvovirus B19 Genotypes 1 to 3 J. Virol., July 1, 2007; 81(13): 6927 - 6935. [Abstract] [Full Text] [PDF]
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G. Zhao, X. Zhou, L. Wang, G. Li, H. Schindelin, and W. J. Lennarz Studies on peptide:N-glycanase-p97 interaction suggest that p97 phosphorylation modulates endoplasmic reticulum-associated degradation PNAS, May 22, 2007; 104(21): 8785 - 8790. [Abstract] [Full Text] [PDF]
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D. M. Baron, Z. P. Kabututu, and K. L. Hill Stuck in reverse: loss of LC1 in Trypanosoma brucei disrupts outer dynein arms and leads to reverse flagellar beat and backward movement J. Cell Sci., May 1, 2007; 120(9): 1513 - 1520. [Abstract] [Full Text] [PDF]
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J. W. Hewett, B. Tannous, B. P. Niland, F. C. Nery, J. Zeng, Y. Li, and X. O. Breakefield Mutant torsinA interferes with protein processing through the secretory pathway in DYT1 dystonia cells PNAS, April 24, 2007; 104(17): 7271 - 7276. [Abstract] [Full Text] [PDF]
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T. Oda, N. Hirokawa, and M. Kikkawa Three-dimensional structures of the flagellar dynein-microtubule complex by cryoelectron microscopy J. Cell Biol., April 23, 2007; 177(2): 243 - 252. [Abstract] [Full Text] [PDF]
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E. Miura, Y. Kato, R. Matsushima, V. Albrecht, S. Laalami, and W. Sakamoto The Balance between Protein Synthesis and Degradation in Chloroplasts Determines Leaf Variegation in Arabidopsis yellow variegated Mutants PLANT CELL, April 1, 2007; 19(4): 1313 - 1328. [Abstract] [Full Text] [PDF]
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K. A. Boyle, L. Arps, and P. Traktman Biochemical and Genetic Analysis of the Vaccinia Virus D5 Protein: Multimerization-Dependent ATPase Activity Is Required To Support Viral DNA Replication J. Virol., January 15, 2007; 81(2): 844 - 859. [Abstract] [Full Text] [PDF]
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P. M. Matias, S. Gorynia, P. Donner, and M. A. Carrondo Crystal Structure of the Human AAA+ Protein RuvBL1 J. Biol. Chem., December 15, 2006; 281(50): 38918 - 38929. [Abstract] [Full Text] [PDF]
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A. W. R. Serohijos, Y. Chen, F. Ding, T. C. Elston, and N. V. Dokholyan A structural model reveals energy transduction in dynein PNAS, December 5, 2006; 103(49): 18540 - 18545. [Abstract] [Full Text] [PDF]
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E. Axelsson, J. Lundqvist, A. Sawicki, S. Nilsson, I. Schroder, S. Al-Karadaghi, R. D. Willows, and M. Hansson Recessiveness and Dominance in Barley Mutants Deficient in Mg-Chelatase Subunit D, an AAA Protein Involved in Chlorophyll Biosynthesis PLANT CELL, December 1, 2006; 18(12): 3606 - 3616. [Abstract] [Full Text] [PDF]
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T. Shima, T. Kon, K. Imamula, R. Ohkura, and K. Sutoh From the Cover: Two modes of microtubule sliding driven by cytoplasmic dynein PNAS, November 21, 2006; 103(47): 17736 - 17740. [Abstract] [Full Text] [PDF]
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M. P. Koonce Dynein shifts into second gear PNAS, November 21, 2006; 103(47): 17587 - 17588. [Full Text] [PDF]
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A. Johnson, N. Y. Yao, G. D. Bowman, J. Kuriyan, and M. O'Donnell The Replication Factor C Clamp Loader Requires Arginine Finger Sensors to Drive DNA Binding and Proliferating Cell Nuclear Antigen Loading J. Biol. Chem., November 17, 2006; 281(46): 35531 - 35543. [Abstract] [Full Text] [PDF]
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P. Hook and R. B. Vallee The dynein family at a glance J. Cell Sci., November 1, 2006; 119(21): 4369 - 4371. [Full Text] [PDF]
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 C. Ioannou, P. M. Schaeffer, N. E. Dixon, and P. Soultanas Helicase binding to DnaI exposes a cryptic DNA-binding site during helicase loading in Bacillus subtilis Nucleic Acids Res., October 6, 2006; 34(18): 5247 - 5258. [Abstract] [Full Text] [PDF]
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A. F. Neuwald Hypothesis: bacterial clamp loader ATPase activation through DNA-dependent repositioning of the catalytic base and of a trans-acting catalytic threonine Nucleic Acids Res., October 6, 2006; 34(18): 5280 - 5290. [Abstract] [Full Text] [PDF]
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S. Tamura, S. Yasutake, N. Matsumoto, and Y. Fujiki Dynamic and Functional Assembly of the AAA Peroxins, Pex1p and Pex6p, and Their Membrane Receptor Pex26p J. Biol. Chem., September 22, 2006; 281(38): 27693 - 27704. [Abstract] [Full Text] [PDF]
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 W. Lilyestrom, M. G. Klein, R. Zhang, A. Joachimiak, and X. S. Chen Crystal structure of SV40 large T-antigen bound to p53: interplay between a viral oncoprotein and a cellular tumor suppressor Genes & Dev., September 1, 2006; 20(17): 2373 - 2382. [Abstract] [Full Text] [PDF]
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D. Wang and A. R. Portis Jr. Increased Sensitivity of Oxidized Large Isoform of Ribulose-1,5-bisphosphate Carboxylase/Oxygenase (Rubisco) Activase to ADP Inhibition Is Due to an Interaction between Its Carboxyl Extension and Nucleotide-binding Pocket J. Biol. Chem., September 1, 2006; 281(35): 25241 - 25249. [Abstract] [Full Text] [PDF]
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D. M. Veltman and P. J.M. Van Haastert Guanylyl Cyclase Protein and cGMP Product Independently Control Front and Back of Chemotaxing Dictyostelium Cells Mol. Biol. Cell, September 1, 2006; 17(9): 3921 - 3929. [Abstract] [Full Text] [PDF]
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 T. V. Rotanova, I. Botos, E. E. Melnikov, F. Rasulova, A. Gustchina, M. R. Maurizi, and A. Wlodawer Slicing a protease: Structural features of the ATP-dependent Lon proteases gleaned from investigations of isolated domains. Protein Sci., August 1, 2006; 15(8): 1815 - 1828. [Abstract] [Full Text] [PDF]
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M. Miethke, M. Hecker, and U. Gerth Involvement of Bacillus subtilis ClpE in CtsR Degradation and Protein Quality Control J. Bacteriol., July 1, 2006; 188(13): 4610 - 4619. [Abstract] [Full Text] [PDF]
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N. Y. Yao, A. Johnson, G. D. Bowman, J. Kuriyan, and M. O'Donnell Mechanism of Proliferating Cell Nuclear Antigen Clamp Opening by Replication Factor C J. Biol. Chem., June 23, 2006; 281(25): 17528 - 17539. [Abstract] [Full Text] [PDF]
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S. De Carlo, B. Chen, T. R. Hoover, E. Kondrashkina, E. Nogales, and B. T. Nixon The structural basis for regulated assembly and function of the transcriptional activator NtrC Genes & Dev., June 1, 2006; 20(11): 1485 - 1495. [Abstract] [Full Text] [PDF]
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G. Meinke, P. A. Bullock, and A. Bohm Crystal Structure of the Simian Virus 40 Large T-Antigen Origin-Binding Domain J. Virol., May 1, 2006; 80(9): 4304 - 4312. [Abstract] [Full Text] [PDF]
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 S.-H. JIN, J. HONG, X.-Q. LI, and D.-A. JIANG Antisense Inhibition of Rubisco Activase Increases Rubisco Content and Alters the Proportion of Rubisco Activase in Stroma and Thylakoids in Chloroplasts of Rice Leaves Ann. Bot., May 1, 2006; 97(5): 739 - 744. [Abstract] [Full Text] [PDF]
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M. O'Donnell Replisome Architecture and Dynamics in Escherichia coli J. Biol. Chem., April 21, 2006; 281(16): 10653 - 10656. [Full Text] [PDF]
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S. Waga and A. Zembutsu Dynamics of DNA Binding of Replication Initiation Proteins during de Novo Formation of Pre-replicative Complexes in Xenopus Egg Extracts J. Biol. Chem., April 21, 2006; 281(16): 10926 - 10934. [Abstract] [Full Text] [PDF]
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' subunit of
Escherichia coli DNA polymerase III and the hexamerization component of N-ethylmaleimide-sensitive fusion protein,
provides structural and mechanistic insights into these proteins,
collectively designated the AAA+ class. Whole-genome analysis
indicates that this class is ancient and has undergone considerable
functional divergence prior to the emergence of the major divisions of
life. These proteins often perform chaperone-like functions that assist
in the assembly, operation, or disassembly of protein complexes. The
hexameric architecture often associated with this class can provide a
hole through which DNA or RNA can be thread; this may be important for
assembly or remodeling of DNA-protein complexes.