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RESEARCH
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  L. Bermudez, U. Urias, D. Milstein, L. Kamenetzky, R. Asis, A. R. Fernie, M. A. Van Sluys, F. Carrari, and M. Rossi A candidate gene survey of quantitative trait loci affecting chemical composition in tomato fruit J. Exp. Bot., July 1, 2008; 59(10): 2875 - 2890. [Abstract] [Full Text] [PDF]
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 C. E. Grover, Y. Yu, R. A. Wing, A. H. Paterson, and J. F. Wendel A Phylogenetic Analysis of Indel Dynamics in the Cotton Genus Mol. Biol. Evol., July 1, 2008; 25(7): 1415 - 1428. [Abstract] [Full Text] [PDF]
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R. Zhang, Y.-Q. Wang, and B. Su Molecular Evolution of a Primate-Specific microRNA Family Mol. Biol. Evol., July 1, 2008; 25(7): 1493 - 1502. [Abstract] [Full Text] [PDF]
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 M. J. Roach and M. K. Deyholos Microarray Analysis of Developing Flax Hypocotyls Identifies Novel Transcripts Correlated with Specific Stages of Phloem Fibre Differentiation Ann. Bot., June 30, 2008; (2008) mcn110v1. [Abstract] [Full Text] [PDF]
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 L. T. T. Tran-Nguyen, M. Kube, B. Schneider, R. Reinhardt, and K. S. Gibb Comparative Genome Analysis of "Candidatus Phytoplasma australiense" (Subgroup tuf-Australia I; rp-A) and "Ca. Phytoplasma asteris" Strains OY-M and AY-WB J. Bacteriol., June 1, 2008; 190(11): 3979 - 3991. [Abstract] [Full Text] [PDF]
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 A. D. Kern and D. J. Begun Recurrent Deletion and Gene Presence/Absence Polymorphism: Telomere Dynamics Dominate Evolution at the Tip of 3L in Drosophila melanogaster and D. simulans Genetics, June 1, 2008; 179(2): 1021 - 1027. [Abstract] [Full Text] [PDF]
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 K. Nakayama, A. Yamashita, K. Kurokawa, T. Morimoto, M. Ogawa, M. Fukuhara, H. Urakami, M. Ohnishi, I. Uchiyama, Y. Ogura, et al. The Whole-genome Sequencing of the Obligate Intracellular Bacterium Orientia tsutsugamushi Revealed Massive Gene Amplification During Reductive Genome Evolution DNA Res, May 28, 2008; (2008) dsn011v1. [Abstract] [Full Text] [PDF]
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 E. Strain, L. A. Kelley, S. Schultz-Cherry, S. V. Muse, and M. D. Koci Genomic Analysis of Closely Related Astroviruses J. Virol., May 15, 2008; 82(10): 5099 - 5103. [Abstract] [Full Text] [PDF]
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 S. A. Pineiro, H. N. Williams, and O. C. Stine Phylogenetic relationships amongst the saltwater members of the genus Bacteriovorax using rpoB sequences and reclassification of Bacteriovorax stolpii as Bacteriolyticum stolpii gen. nov., comb. nov. Int J Syst Evol Microbiol, May 1, 2008; 58(5): 1203 - 1209. [Abstract] [Full Text] [PDF]
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 S. R. Starkenburg, F. W. Larimer, L. Y. Stein, M. G. Klotz, P. S. G. Chain, L. A. Sayavedra-Soto, A. T. Poret-Peterson, M. E. Gentry, D. J. Arp, B. Ward, et al. Complete Genome Sequence of Nitrobacter hamburgensis X14 and Comparative Genomic Analysis of Species within the Genus Nitrobacter Appl. Envir. Microbiol., May 1, 2008; 74(9): 2852 - 2863. [Abstract] [Full Text] [PDF]
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N. Warthmann, S. Das, C. Lanz, and D. Weigel Comparative Analysis of the MIR319a MicroRNA Locus in Arabidopsis and Related Brassicaceae Mol. Biol. Evol., May 1, 2008; 25(5): 892 - 902. [Abstract] [Full Text] [PDF]
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 D. E. Janes, T. Ezaz, J. A. Marshall Graves, and S. V. Edwards Characterization, chromosomal location, and genomic neighborhood of a ratite ortholog of a gene with gonadal expression in mammals Integr. Comp. Biol., April 28, 2008; (2008) icn024v1. [Abstract] [Full Text] [PDF]
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I. Anderson, J. Rodriguez, D. Susanti, I. Porat, C. Reich, L. E. Ulrich, J. G. Elkins, K. Mavromatis, A. Lykidis, E. Kim, et al. Genome Sequence of Thermofilum pendens Reveals an Exceptional Loss of Biosynthetic Pathways without Genome Reduction J. Bacteriol., April 15, 2008; 190(8): 2957 - 2965. [Abstract] [Full Text] [PDF]
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X. Hu, W. Fan, B. Han, H. Liu, D. Zheng, Q. Li, W. Dong, J. Yan, M. Gao, C. Berry, et al. Complete Genome Sequence of the Mosquitocidal Bacterium Bacillus sphaericus C3-41 and Comparison with Those of Closely Related Bacillus Species J. Bacteriol., April 15, 2008; 190(8): 2892 - 2902. [Abstract] [Full Text] [PDF]
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 J. E. Landers, A. L. Leclerc, L. Shi, A. Virkud, T. Cho, M. M. Maxwell, A. F. Henry, M. Polak, J. D. Glass, T. J. Kwiatkowski, et al. New VAPB deletion variant and exclusion of VAPB mutations in familial ALS Neurology, April 1, 2008; 70(14): 1179 - 1185. [Abstract] [Full Text] [PDF]
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K.-H. Gartemann, B. Abt, T. Bekel, A. Burger, J. Engemann, M. Flugel, L. Gaigalat, A. Goesmann, I. Grafen, J. Kalinowski, et al. The Genome Sequence of the Tomato-Pathogenic Actinomycete Clavibacter michiganensis subsp. michiganensis NCPPB382 Reveals a Large Island Involved in Pathogenicity J. Bacteriol., March 15, 2008; 190(6): 2138 - 2149. [Abstract] [Full Text] [PDF]
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 H. Chen, P. L. Morrell, M. de la Cruz, and M. T. Clegg Nucleotide Diversity and Linkage Disequilibrium in Wild Avocado (Persea americana Mill.) J. Hered., March 14, 2008; (2008) esn016v1. [Abstract] [Full Text] [PDF]
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 C. Viana-Niero, K. V. B. Lima, M. L. Lopes, M. C. da Silva Rabello, L. R. Marsola, V. C. R. Brilhante, A. M. Durham, and S. C. Leao Molecular Characterization of Mycobacterium massiliense and Mycobacterium bolletii in Isolates Collected from Outbreaks of Infections after Laparoscopic Surgeries and Cosmetic Procedures J. Clin. Microbiol., March 1, 2008; 46(3): 850 - 855. [Abstract] [Full Text] [PDF]
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C.-T. Lee, C. Amaro, K.-M. Wu, E. Valiente, Y.-F. Chang, S.-F. Tsai, C.-H. Chang, and L.-I Hor A Common Virulence Plasmid in Biotype 2 Vibrio vulnificus and Its Dissemination Aided by a Conjugal Plasmid J. Bacteriol., March 1, 2008; 190(5): 1638 - 1648. [Abstract] [Full Text] [PDF]
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 J. E. Horvath, D. W. Weisrock, S. L. Embry, I. Fiorentino, J. P. Balhoff, P. Kappeler, G. A. Wray, H. F. Willard, and A. D. Yoder Development and application of a phylogenomic toolkit: Resolving the evolutionary history of Madagascar's lemurs Genome Res., March 1, 2008; 18(3): 489 - 499. [Abstract] [Full Text] [PDF]
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S. M. Vargas, F. C. F. Araujo, D. S. Monteiro, S. C. Estima, A. P. Almeida, L. S. Soares, and F. R. Santos Genetic Diversity and Origin of Leatherback Turtles (Dermochelys coriacea) from the Brazilian Coast J. Hered., March 1, 2008; 99(2): 215 - 220. [Abstract] [Full Text] [PDF]
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J. L. Kelley and W. J. Swanson Dietary Change and Adaptive Evolution of enamelin in Humans and Among Primates Genetics, March 1, 2008; 178(3): 1595 - 1603. [Abstract] [Full Text] [PDF]
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J. F. Storz, F. G. Hoffmann, J. C. Opazo, and H. Moriyama Adaptive Functional Divergence Among Triplicated {alpha}-Globin Genes in Rodents Genetics, March 1, 2008; 178(3): 1623 - 1638. [Abstract] [Full Text] [PDF]
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S. M. Sievert, K. M. Scott, M. G. Klotz, P. S. G. Chain, L. J. Hauser, J. Hemp, M. Hugler, M. Land, A. Lapidus, F. W. Larimer, et al. Genome of the Epsilonproteobacterial Chemolithoautotroph Sulfurimonas denitrificans Appl. Envir. Microbiol., February 15, 2008; 74(4): 1145 - 1156. [Abstract] [Full Text] [PDF]
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S. J. Foote, J. T. Bosse, A. B. Bouevitch, P. R. Langford, N. M. Young, and J. H. E. Nash The Complete Genome Sequence of Actinobacillus pleuropneumoniae L20 (Serotype 5b) J. Bacteriol., February 15, 2008; 190(4): 1495 - 1496. [Abstract] [Full Text] [PDF]
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M. Boyer, J. Haurat, S. Samain, B. Segurens, F. Gavory, V. Gonzalez, P. Mavingui, R. Rohr, R. Bally, and F. Wisniewski-Dye Bacteriophage Prevalence in the Genus Azospirillum and Analysis of the First Genome Sequence of an Azospirillum brasilense Integrative Phage Appl. Envir. Microbiol., February 1, 2008; 74(3): 861 - 874. [Abstract] [Full Text] [PDF]
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V. Kunin, S. He, F. Warnecke, S. B. Peterson, H. Garcia Martin, M. Haynes, N. Ivanova, L. L. Blackall, M. Breitbart, F. Rohwer, et al. A bacterial metapopulation adapts locally to phage predation despite global dispersal Genome Res., February 1, 2008; 18(2): 293 - 297. [Abstract] [Full Text] [PDF]
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N. J. Wickett, Y. Zhang, S. K. Hansen, J. M. Roper, J. V. Kuehl, S. A. Plock, P. G. Wolf, C. W. dePamphilis, J. L. Boore, and B. Goffinet Functional Gene Losses Occur with Minimal Size Reduction in the Plastid Genome of the Parasitic Liverwort Aneura mirabilis Mol. Biol. Evol., February 1, 2008; 25(2): 393 - 401. [Abstract] [Full Text] [PDF]
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N. Jamalludeen, A. M. Kropinski, R. P. Johnson, E. Lingohr, J. Harel, and C. L. Gyles Complete Genomic Sequence of Bacteriophage {phi}EcoM-GJ1, a Novel Phage That Has Myovirus Morphology and a Podovirus-Like RNA Polymerase Appl. Envir. Microbiol., January 15, 2008; 74(2): 516 - 525. [Abstract] [Full Text] [PDF]
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 A. Martin, A. Cubillos-Ruiz, A. Von Groll, P. Del Portillo, F. Portaels, and J. C. Palomino Nitrate reductase assay for the rapid detection of pyrazinamide resistance in Mycobacterium tuberculosis using nicotinamide J. Antimicrob. Chemother., January 1, 2008; 61(1): 123 - 127. [Abstract] [Full Text] [PDF]
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 W. Li, L. Huang, and B. S. Gill Recurrent Deletions of Puroindoline Genes at the Grain Hardness Locus in Four Independent Lineages of Polyploid Wheat1,[W],[OA] Plant Physiology, January 1, 2008; 146(1): 200 - 212. [Abstract] [Full Text] [PDF]
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A. Tuanyok, R. K. Auerbach, T. S. Brettin, D. C. Bruce, A. C. Munk, J. C. Detter, T. Pearson, H. Hornstra, R. W. Sermswan, V. Wuthiekanun, et al. A Horizontal Gene Transfer Event Defines Two Distinct Groups within Burkholderia pseudomallei That Have Dissimilar Geographic Distributions J. Bacteriol., December 15, 2007; 189(24): 9044 - 9049. [Abstract] [Full Text] [PDF]
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M. K. Fujita, J. L. Boore, and C. Moritz Multiple Origins and Rapid Evolution of Duplicated Mitochondrial Genes in Parthenogenetic Geckos (Heteronotia binoei; Squamata, Gekkonidae) Mol. Biol. Evol., December 1, 2007; 24(12): 2775 - 2786. [Abstract] [Full Text] [PDF]
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N. L. Hiller, B. Janto, J. S. Hogg, R. Boissy, S. Yu, E. Powell, R. Keefe, N. E. Ehrlich, K. Shen, J. Hayes, et al. Comparative Genomic Analyses of Seventeen Streptococcus pneumoniae Strains: Insights into the Pneumococcal Supragenome J. Bacteriol., November 15, 2007; 189(22): 8186 - 8195. [Abstract] [Full Text] [PDF]
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 N. J. R. Fagundes, N. Ray, M. Beaumont, S. Neuenschwander, F. M. Salzano, S. L. Bonatto, and L. Excoffier Statistical evaluation of alternative models of human evolution PNAS, November 6, 2007; 104(45): 17614 - 17619. [Abstract] [Full Text] [PDF]
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X. Guan, T. Geng, P. Silva, and E. J. Smith Mitochondrial DNA Sequence and Haplotype Variation Analysis in the Chicken (Gallus gallus) J. Hered., November 5, 2007; (2007) esm094v1. [Abstract] [Full Text] [PDF]
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T. Lux, M. Nuhn, R. Hakenbeck, and P. Reichmann Diversity of Bacteriocins and Activity Spectrum in Streptococcus pneumoniae J. Bacteriol., November 1, 2007; 189(21): 7741 - 7751. [Abstract] [Full Text] [PDF]
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A. C. S. Ramos, J. P. Lemos-Filho, R. A. Ribeiro, F. R. Santos, and M. B. Lovato Phylogeography of the Tree Hymenaea stigonocarpa (Fabaceae: Caesalpinioideae) and the Influence of Quaternary Climate Changes in the Brazilian Cerrado Ann. Bot., November 1, 2007; 100(6): 1219 - 1228. [Abstract] [Full Text] [PDF]
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H. G. Parker, A. V. Kukekova, D. T. Akey, O. Goldstein, E. F. Kirkness, K. C. Baysac, D. S. Mosher, G. D. Aguirre, G. M. Acland, and E. A. Ostrander Breed relationships facilitate fine-mapping studies: A 7.8-kb deletion cosegregates with Collie eye anomaly across multiple dog breeds Genome Res., November 1, 2007; 17(11): 1562 - 1571. [Abstract] [Full Text] [PDF]
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L. Gordon, S. Yang, M. Tran-Gyamfi, D. Baggott, M. Christensen, A. Hamilton, R. Crooijmans, M. Groenen, S. Lucas, I. Ovcharenko, et al. Comparative analysis of chicken chromosome 28 provides new clues to the evolutionary fragility of gene-rich vertebrate regions Genome Res., November 1, 2007; 17(11): 1603 - 1613. [Abstract] [Full Text] [PDF]
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A. Schluter, I. Krahn, F. Kollin, G. Bonemann, M. Stiens, R. Szczepanowski, S. Schneiker, and A. Puhler IncP-1{beta} Plasmid pGNB1 Isolated from a Bacterial Community from a Wastewater Treatment Plant Mediates Decolorization of Triphenylmethane Dyes Appl. Envir. Microbiol., October 15, 2007; 73(20): 6345 - 6350. [Abstract] [Full Text] [PDF]
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B. Afshar, N. K. Fry, W. Bellamy, A. P. Underwood, T. G. Harrison, and and Members of the European Working Group for Legi External Quality Assessment of a DNA Sequence-Based Scheme for Epidemiological Typing of Legionella pneumophila by an International Network of Laboratories J. Clin. Microbiol., October 1, 2007; 45(10): 3251 - 3256. [Abstract] [Full Text] [PDF]
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J. O. Allen, C. M. Fauron, P. Minx, L. Roark, S. Oddiraju, G. N. Lin, L. Meyer, H. Sun, K. Kim, C. Wang, et al. Comparisons Among Two Fertile and Three Male-Sterile Mitochondrial Genomes of Maize Genetics, October 1, 2007; 177(2): 1173 - 1192. [Abstract] [Full Text] [PDF]
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N. L. Clark, G. D. Findlay, X. Yi, M. J. MacCoss, and W. J. Swanson Duplication and Selection on Abalone Sperm Lysin in an Allopatric Population Mol. Biol. Evol., September 1, 2007; 24(9): 2081 - 2090. [Abstract] [Full Text] [PDF]
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H. F. Proschowsky, A. Flagstad, S. Cirera, C. B. Joergensen, and M. Fredholm Identification of a Mutation in the CHAT Gene of Old Danish Pointing Dogs Affected with Congenital Myasthenic Syndrome J. Hered., August 3, 2007; (2007) esm026v2. [Abstract] [Full Text] [PDF]
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N. Yuhki, T. Beck, R. Stephens, B. Neelam, and S. J. O'Brien Comparative Genomic Structure of Human, Dog, and Cat MHC: HLA, DLA, and FLA J. Hered., August 3, 2007; (2007) esm056v1. [Abstract] [Full Text] [PDF]
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W. Rabsch, L. Ma, G. Wiley, F. Z. Najar, W. Kaserer, D. W. Schuerch, J. E. Klebba, B. A. Roe, J. A. L. Gomez, M. Schallmey, et al. FepA- and TonB-Dependent Bacteriophage H8: Receptor Binding and Genomic Sequence J. Bacteriol., August 1, 2007; 189(15): 5658 - 5674. [Abstract] [Full Text] [PDF]
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 L. Fernandez, R. Milne, J Bravo, J. Lopez, J. Aviles, M. Longo, J Benitez, P Lazaro, and G Ribas MC1R: three novel variants identified in a malignant melanoma association study in the Spanish population Carcinogenesis, August 1, 2007; 28(8): 1659 - 1664. [Abstract] [Full Text] [PDF]
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W. Barendse, B. E. Harrison, R. J. Hawken, D. M. Ferguson, J. M. Thompson, M. B. Thomas, and R. J. Bunch Epistasis Between Calpain 1 and Its Inhibitor Calpastatin Within Breeds of Cattle Genetics, August 1, 2007; 176(4): 2601 - 2610. [Abstract] [Full Text] [PDF]
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 D. M. Toleno, P. L. Morrell, and M. T. Clegg Error detection in SNP data by considering the likelihood of recombinational history implied by three-site combinations Bioinformatics, July 15, 2007; 23(14): 1807 - 1814. [Abstract] [Full Text] [PDF]
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M. Richter, M. Kube, D. A. Bazylinski, T. Lombardot, F. O. Glockner, R. Reinhardt, and D. Schuler Comparative Genome Analysis of Four Magnetotactic Bacteria Reveals a Complex Set of Group-Specific Genes Implicated in Magnetosome Biomineralization and Function J. Bacteriol., July 1, 2007; 189(13): 4899 - 4910. [Abstract] [Full Text] [PDF]
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F. Panitz, H. Stengaard, H. Hornshoj, J. Gorodkin, J. Hedegaard, S. Cirera, B. Thomsen, L. B. Madsen, A. Hoj, R. K. Vingborg, et al. SNP mining porcine ESTs with MAVIANT, a novel tool for SNP evaluation and annotation Bioinformatics, July 1, 2007; 23(13): i387 - i391. [Abstract] [Full Text] [PDF]
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 R. T. Souza, M. R. M. Santos, F. M. Lima, N. M. El-Sayed, P. J. Myler, J. C. Ruiz, and J. F. da Silveira New Trypanosoma cruzi Repeated Element That Shows Site Specificity for Insertion Eukaryot. Cell, July 1, 2007; 6(7): 1228 - 1238. [Abstract] [Full Text] [PDF]
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J. Zhang, R. P. Finney, W. Rowe, M. Edmonson, S. H. Yang, T. Dracheva, J. Jen, J. P. Struewing, and K. H. Buetow Systematic analysis of genetic alterations in tumors using Cancer Genome WorkBench (CGWB) Genome Res., July 1, 2007; 17(7): 1111 - 1117. [Abstract] [Full Text] [PDF]
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D. C. Richter, S. C. Schuster, and D. H. Huson OSLay: optimal syntenic layout of unfinished assemblies Bioinformatics, July 1, 2007; 23(13): 1573 - 1579. [Abstract] [Full Text] [PDF]
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B. J. Hayes, K. Nilsen, P. R. Berg, E. Grindflek, and S. Lien SNP detection exploiting multiple sources of redundancy in large EST collections improves validation rates Bioinformatics, July 1, 2007; 23(13): 1692 - 1693. [Abstract] [Full Text] [PDF]
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B. S. Samuel, E. E. Hansen, J. K. Manchester, P. M. Coutinho, B. Henrissat, R. Fulton, P. Latreille, K. Kim, R. K. Wilson, and J. I. Gordon Genomic and metabolic adaptations of Methanobrevibacter smithii to the human gut PNAS, June 19, 2007; 104(25): 10643 - 10648. [Abstract] [Full Text] [PDF]
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