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RESEARCH
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  M.-O. Sauvain, A. P. Dorr, B. Stevenson, A. Quazzola, F. Naef, M. Wiznerowicz, F. Schutz, V. Jongeneel, D. Duboule, F. Spitz, et al. Genotypic Features of Lentivirus Transgenic Mice J. Virol., July 15, 2008; 82(14): 7111 - 7119. [Abstract] [Full Text] [PDF]
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 J.-F. Dubern, E. R. Coppoolse, W. J. Stiekema, and G. V. Bloemberg Genetic and functional characterization of the gene cluster directing the biosynthesis of putisolvin I and II in Pseudomonas putida strain PCL1445 Microbiology, July 1, 2008; 154(7): 2070 - 2083. [Abstract] [Full Text] [PDF]
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P. Gayral, J.-C. Noa-Carrazana, M. Lescot, F. Lheureux, B. E. L. Lockhart, T. Matsumoto, P. Piffanelli, and M.-L. Iskra-Caruana A Single Banana Streak Virus Integration Event in the Banana Genome as the Origin of Infectious Endogenous Pararetrovirus J. Virol., July 1, 2008; 82(13): 6697 - 6710. [Abstract] [Full Text] [PDF]
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 C. E. Grover, Y. Yu, R. A. Wing, A. H. Paterson, and J. F. Wendel A Phylogenetic Analysis of Indel Dynamics in the Cotton Genus Mol. Biol. Evol., July 1, 2008; 25(7): 1415 - 1428. [Abstract] [Full Text] [PDF]
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R. Zhang, Y.-Q. Wang, and B. Su Molecular Evolution of a Primate-Specific microRNA Family Mol. Biol. Evol., July 1, 2008; 25(7): 1493 - 1502. [Abstract] [Full Text] [PDF]
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 M. J. Roach and M. K. Deyholos Microarray Analysis of Developing Flax Hypocotyls Identifies Novel Transcripts Correlated with Specific Stages of Phloem Fibre Differentiation Ann. Bot., June 30, 2008; (2008) mcn110v1. [Abstract] [Full Text] [PDF]
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 A. Dutt, H. B. Salvesen, T.-H. Chen, A. H. Ramos, R. C. Onofrio, C. Hatton, R. Nicoletti, W. Winckler, R. Grewal, M. Hanna, et al. Drug-sensitive FGFR2 mutations in endometrial carcinoma PNAS, June 24, 2008; 105(25): 8713 - 8717. [Abstract] [Full Text] [PDF]
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 H. Takarada, M. Sekine, H. Kosugi, Y. Matsuo, T. Fujisawa, S. Omata, E. Kishi, A. Shimizu, N. Tsukatani, S. Tanikawa, et al. Complete Genome Sequence of the Soil Actinomycete Kocuria rhizophila J. Bacteriol., June 15, 2008; 190(12): 4139 - 4146. [Abstract] [Full Text] [PDF]
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 L. E. Flagel, R. A. Rapp, C. E. Grover, M. P. Widrlechner, J. Hawkins, J. L. Grafenberg, I. Alvarez, G. Y. Chung, and J. F. Wendel Phylogenetic, morphological, and chemotaxonomic incongruence in the North American endemic genus Echinacea Am. J. Botany, June 1, 2008; 95(6): 756 - 765. [Abstract] [Full Text] [PDF]
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 R. A. Holt and S. J.M. Jones The new paradigm of flow cell sequencing Genome Res., June 1, 2008; 18(6): 839 - 846. [Abstract] [Full Text] [PDF]
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 S. Mitra, I. V. Shcherbakova, R. B. Altman, M. Brenowitz, and A. Laederach High-throughput single-nucleotide structural mapping by capillary automated footprinting analysis Nucleic Acids Res., June 1, 2008; 36(11): e63 - e63. [Abstract] [Full Text] [PDF]
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T. I. Leakey, J. Zielinski, R. N. Siegfried, E. R. Siegel, C.-Y. Fan, and C. A. Cooney A simple algorithm for quantifying DNA methylation levels on multiple independent CpG sites in bisulfite genomic sequencing electropherograms Nucleic Acids Res., June 1, 2008; 36(11): e64 - e64. [Abstract] [Full Text] [PDF]
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 R. M. Freeman JR., M. Wu, M-M. Cordonnier-Pratt, L. H. Pratt, C. E. Gruber, M. Smith, E. S. Lander, N. Stange-Thomann, C. J. Lowe, J. Gerhart, et al. cDNA Sequences for Transcription Factors and Signaling Proteins of the Hemichordate Saccoglossus kowalevskii: Efficacy of the Expressed Sequence Tag (EST) Approach for Evolutionary and Developmental Studies of a New Organism Biol. Bull., June 1, 2008; 214(3): 284 - 302. [Abstract] [Full Text] [PDF]
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 A. D. Kern and D. J. Begun Recurrent Deletion and Gene Presence/Absence Polymorphism: Telomere Dynamics Dominate Evolution at the Tip of 3L in Drosophila melanogaster and D. simulans Genetics, June 1, 2008; 179(2): 1021 - 1027. [Abstract] [Full Text] [PDF]
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Q. Xu, C.-H. C. Cheng, P. Hu, H. Ye, Z. Chen, L. Cao, L. Chen, Y. Shen, and L. Chen Adaptive Evolution of Hepcidin Genes in Antarctic Notothenioid Fishes Mol. Biol. Evol., June 1, 2008; 25(6): 1099 - 1112. [Abstract] [Full Text] [PDF]
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E. Strain, L. A. Kelley, S. Schultz-Cherry, S. V. Muse, and M. D. Koci Genomic Analysis of Closely Related Astroviruses J. Virol., May 15, 2008; 82(10): 5099 - 5103. [Abstract] [Full Text] [PDF]
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 S. A. Pineiro, H. N. Williams, and O. C. Stine Phylogenetic relationships amongst the saltwater members of the genus Bacteriovorax using rpoB sequences and reclassification of Bacteriovorax stolpii as Bacteriolyticum stolpii gen. nov., comb. nov. Int J Syst Evol Microbiol, May 1, 2008; 58(5): 1203 - 1209. [Abstract] [Full Text] [PDF]
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 M. Quan, M. van Vuuren, P. G. Howell, D. Groenewald, and A. J. Guthrie Molecular epidemiology of the African horse sickness virus S10 gene J. Gen. Virol., May 1, 2008; 89(5): 1159 - 1168. [Abstract] [Full Text] [PDF]
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 S. R. Starkenburg, F. W. Larimer, L. Y. Stein, M. G. Klotz, P. S. G. Chain, L. A. Sayavedra-Soto, A. T. Poret-Peterson, M. E. Gentry, D. J. Arp, B. Ward, et al. Complete Genome Sequence of Nitrobacter hamburgensis X14 and Comparative Genomic Analysis of Species within the Genus Nitrobacter Appl. Envir. Microbiol., May 1, 2008; 74(9): 2852 - 2863. [Abstract] [Full Text] [PDF]
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C. Liang, Y. Liu, L. Liu, A. C. Davis, Y. Shen, and Q. Q. Li Expressed Sequence Tags With cDNA Termini: Previously Overlooked Resources for Gene Annotation and Transcriptome Exploration in Chlamydomonas reinhardtii Genetics, May 1, 2008; 179(1): 83 - 93. [Abstract] [Full Text] [PDF]
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W. Brockman, P. Alvarez, S. Young, M. Garber, G. Giannoukos, W. L. Lee, C. Russ, E. S. Lander, C. Nusbaum, and D. B. Jaffe Quality scores and SNP detection in sequencing-by-synthesis systems Genome Res., May 1, 2008; 18(5): 763 - 770. [Abstract] [Full Text] [PDF]
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N. Warthmann, S. Das, C. Lanz, and D. Weigel Comparative Analysis of the MIR319a MicroRNA Locus in Arabidopsis and Related Brassicaceae Mol. Biol. Evol., May 1, 2008; 25(5): 892 - 902. [Abstract] [Full Text] [PDF]
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I. Anderson, J. Rodriguez, D. Susanti, I. Porat, C. Reich, L. E. Ulrich, J. G. Elkins, K. Mavromatis, A. Lykidis, E. Kim, et al. Genome Sequence of Thermofilum pendens Reveals an Exceptional Loss of Biosynthetic Pathways without Genome Reduction J. Bacteriol., April 15, 2008; 190(8): 2957 - 2965. [Abstract] [Full Text] [PDF]
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 T. D. Harris, P. R. Buzby, H. Babcock, E. Beer, J. Bowers, I. Braslavsky, M. Causey, J. Colonell, J. DiMeo, J. W. Efcavitch, et al. Single-Molecule DNA Sequencing of a Viral Genome Science, April 4, 2008; 320(5872): 106 - 109. [Abstract] [Full Text] [PDF]
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J. Kleemann, H. Takahara, K. Stuber, and R. O'Connell Identification of soluble secreted proteins from appressoria of Colletotrichum higginsianum by analysis of expressed sequence tags Microbiology, April 1, 2008; 154(4): 1204 - 1217. [Abstract] [Full Text] [PDF]
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N. Al-Kaff, E. Knight, I. Bertin, T. Foote, N. Hart, S. Griffiths, and G. Moore Detailed Dissection of the Chromosomal Region Containing the Ph1 Locus in Wheat Triticum aestivum: With Deletion Mutants and Expression Profiling Ann. Bot., April 1, 2008; 101(6): 863 - 872. [Abstract] [Full Text] [PDF]
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 K. Malde The effect of sequence quality on sequence alignment Bioinformatics, April 1, 2008; 24(7): 897 - 900. [Abstract] [Full Text] [PDF]
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T. H. Struck and F. Fisse Phylogenetic Position of Nemertea Derived from Phylogenomic Data Mol. Biol. Evol., April 1, 2008; 25(4): 728 - 736. [Abstract] [Full Text] [PDF]
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 J. E. Landers, A. L. Leclerc, L. Shi, A. Virkud, T. Cho, M. M. Maxwell, A. F. Henry, M. Polak, J. D. Glass, T. J. Kwiatkowski, et al. New VAPB deletion variant and exclusion of VAPB mutations in familial ALS Neurology, April 1, 2008; 70(14): 1179 - 1185. [Abstract] [Full Text] [PDF]
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K.-H. Gartemann, B. Abt, T. Bekel, A. Burger, J. Engemann, M. Flugel, L. Gaigalat, A. Goesmann, I. Grafen, J. Kalinowski, et al. The Genome Sequence of the Tomato-Pathogenic Actinomycete Clavibacter michiganensis subsp. michiganensis NCPPB382 Reveals a Large Island Involved in Pathogenicity J. Bacteriol., March 15, 2008; 190(6): 2138 - 2149. [Abstract] [Full Text] [PDF]
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T. Yoshida, K. Nagasaki, Y. Takashima, Y. Shirai, Y. Tomaru, Y. Takao, S. Sakamoto, S. Hiroishi, and H. Ogata Ma-LMM01 Infecting Toxic Microcystis aeruginosa Illuminates Diverse Cyanophage Genome Strategies J. Bacteriol., March 1, 2008; 190(5): 1762 - 1772. [Abstract] [Full Text] [PDF]
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C.-T. Lee, C. Amaro, K.-M. Wu, E. Valiente, Y.-F. Chang, S.-F. Tsai, C.-H. Chang, and L.-I Hor A Common Virulence Plasmid in Biotype 2 Vibrio vulnificus and Its Dissemination Aided by a Conjugal Plasmid J. Bacteriol., March 1, 2008; 190(5): 1638 - 1648. [Abstract] [Full Text] [PDF]
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 S. M. Vargas, F. C. F. Araujo, D. S. Monteiro, S. C. Estima, A. P. Almeida, L. S. Soares, and F. R. Santos Genetic Diversity and Origin of Leatherback Turtles (Dermochelys coriacea) from the Brazilian Coast J. Hered., March 1, 2008; 99(2): 215 - 220. [Abstract] [Full Text] [PDF]
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 J. E. Petrisko, C. A. Pearl, D. S. Pilliod, P. P. Sheridan, C. F. Williams, C. R. Peterson, and R. B. Bury Saprolegniaceae identified on amphibian eggs throughout the Pacific Northwest, USA, by internal transcribed spacer sequences and phylogenetic analysis. Mycologia, March 1, 2008; 100(2): 171 - 180. [Abstract] [Full Text] [PDF]
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J. L. Kelley and W. J. Swanson Dietary Change and Adaptive Evolution of enamelin in Humans and Among Primates Genetics, March 1, 2008; 178(3): 1595 - 1603. [Abstract] [Full Text] [PDF]
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J. F. Storz, F. G. Hoffmann, J. C. Opazo, and H. Moriyama Adaptive Functional Divergence Among Triplicated {alpha}-Globin Genes in Rodents Genetics, March 1, 2008; 178(3): 1623 - 1638. [Abstract] [Full Text] [PDF]
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S. M. Sievert, K. M. Scott, M. G. Klotz, P. S. G. Chain, L. J. Hauser, J. Hemp, M. Hugler, M. Land, A. Lapidus, F. W. Larimer, et al. Genome of the Epsilonproteobacterial Chemolithoautotroph Sulfurimonas denitrificans Appl. Envir. Microbiol., February 15, 2008; 74(4): 1145 - 1156. [Abstract] [Full Text] [PDF]
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A. M. Idris, K. Mills-Lujan, K. Martin, and J. K. Brown Melon Chlorotic Leaf Curl Virus: Characterization and Differential Reassortment with Closest Relatives Reveal Adaptive Virulence in the Squash Leaf Curl Virus Clade and Host Shifting by the Host-Restricted Bean Calico Mosaic Virus J. Virol., February 15, 2008; 82(4): 1959 - 1967. [Abstract] [Full Text] [PDF]
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 S. R. Baerson, F. E. Dayan, A. M. Rimando, N. P. D. Nanayakkara, C.-J. Liu, J. Schroder, M. Fishbein, Z. Pan, I. A. Kagan, L. H. Pratt, et al. A Functional Genomics Investigation of Allelochemical Biosynthesis in Sorghum bicolor Root Hairs J. Biol. Chem., February 8, 2008; 283(6): 3231 - 3247. [Abstract] [Full Text] [PDF]
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M. Boyer, J. Haurat, S. Samain, B. Segurens, F. Gavory, V. Gonzalez, P. Mavingui, R. Rohr, R. Bally, and F. Wisniewski-Dye Bacteriophage Prevalence in the Genus Azospirillum and Analysis of the First Genome Sequence of an Azospirillum brasilense Integrative Phage Appl. Envir. Microbiol., February 1, 2008; 74(3): 861 - 874. [Abstract] [Full Text] [PDF]
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N. J. Wickett, Y. Zhang, S. K. Hansen, J. M. Roper, J. V. Kuehl, S. A. Plock, P. G. Wolf, C. W. dePamphilis, J. L. Boore, and B. Goffinet Functional Gene Losses Occur with Minimal Size Reduction in the Plastid Genome of the Parasitic Liverwort Aneura mirabilis Mol. Biol. Evol., February 1, 2008; 25(2): 393 - 401. [Abstract] [Full Text] [PDF]
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N. Jamalludeen, A. M. Kropinski, R. P. Johnson, E. Lingohr, J. Harel, and C. L. Gyles Complete Genomic Sequence of Bacteriophage {phi}EcoM-GJ1, a Novel Phage That Has Myovirus Morphology and a Podovirus-Like RNA Polymerase Appl. Envir. Microbiol., January 15, 2008; 74(2): 516 - 525. [Abstract] [Full Text] [PDF]
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A. Papanicolaou, S. Gebauer-Jung, M. L. Blaxter, W. Owen McMillan, and C. D. Jiggins ButterflyBase: a platform for lepidopteran genomics Nucleic Acids Res., January 11, 2008; 36(suppl_1): D582 - D587. [Abstract] [Full Text] [PDF]
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 A. Martin, A. Cubillos-Ruiz, A. Von Groll, P. Del Portillo, F. Portaels, and J. C. Palomino Nitrate reductase assay for the rapid detection of pyrazinamide resistance in Mycobacterium tuberculosis using nicotinamide J. Antimicrob. Chemother., January 1, 2008; 61(1): 123 - 127. [Abstract] [Full Text] [PDF]
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 T. D. Gallardo, G. B. John, K. Bradshaw, C. Welt, R. Reijo-Pera, P. H. Vogt, P. Touraine, S. Bione, D. Toniolo, L. M. Nelson, et al. Sequence variation at the human FOXO3 locus: a study of premature ovarian failure and primary amenorrhea Hum. Reprod., January 1, 2008; 23(1): 216 - 221. [Abstract] [Full Text] [PDF]
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 J. Nagel, L. K. Culley, Y. Lu, E. Liu, P. D. Matthews, J. F. Stevens, and J. E. Page EST Analysis of Hop Glandular Trichomes Identifies an O-Methyltransferase That Catalyzes the Biosynthesis of Xanthohumol PLANT CELL, January 1, 2008; 20(1): 186 - 200. [Abstract] [Full Text] [PDF]
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 J. C. Preston and E. A. Kellogg Discrete Developmental Roles for Temperate Cereal Grass VERNALIZATION1/FRUITFULL-Like Genes in Flowering Competency and the Transition to Flowering Plant Physiology, January 1, 2008; 146(1): 265 - 276. [Abstract] [Full Text] [PDF]
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S. R. Bench, T. E. Hanson, K. E. Williamson, D. Ghosh, M. Radosovich, K. Wang, and K. E. Wommack Metagenomic Characterization of Chesapeake Bay Virioplankton Appl. Envir. Microbiol., December 1, 2007; 73(23): 7629 - 7641. [Abstract] [Full Text] [PDF]
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R. Jing, R. Johnson, A. Seres, G. Kiss, M. J. Ambrose, M. R. Knox, T. H. N. Ellis, and A. J. Flavell Gene-Based Sequence Diversity Analysis of Field Pea (Pisum) Genetics, December 1, 2007; 177(4): 2263 - 2275. [Abstract] [Full Text] [PDF]
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B. Hausdorf, M. Helmkampf, A. Meyer, A. Witek, H. Herlyn, I. Bruchhaus, T. Hankeln, T. H. Struck, and B. Lieb Spiralian Phylogenomics Supports the Resurrection of Bryozoa Comprising Ectoprocta and Entoprocta Mol. Biol. Evol., December 1, 2007; 24(12): 2723 - 2729. [Abstract] [Full Text] [PDF]
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N. L. Hiller, B. Janto, J. S. Hogg, R. Boissy, S. Yu, E. Powell, R. Keefe, N. E. Ehrlich, K. Shen, J. Hayes, et al. Comparative Genomic Analyses of Seventeen Streptococcus pneumoniae Strains: Insights into the Pneumococcal Supragenome J. Bacteriol., November 15, 2007; 189(22): 8186 - 8195. [Abstract] [Full Text] [PDF]
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N. J. R. Fagundes, N. Ray, M. Beaumont, S. Neuenschwander, F. M. Salzano, S. L. Bonatto, and L. Excoffier Statistical evaluation of alternative models of human evolution PNAS, November 6, 2007; 104(45): 17614 - 17619. [Abstract] [Full Text] [PDF]
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 M. Golebiewski, I. Kern-Zdanowicz, M. Zienkiewicz, M. Adamczyk, J. Zylinska, A. Baraniak, M. Gniadkowski, J. Bardowski, and P. Ceglowski Complete Nucleotide Sequence of the pCTX-M3 Plasmid and Its Involvement in Spread of the Extended-Spectrum {beta}-Lactamase Gene blaCTX-M-3 Antimicrob. Agents Chemother., November 1, 2007; 51(11): 3789 - 3795. [Abstract] [Full Text] [PDF]
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J. Nuytinck, A. Verbeken, and S. L. Miller Worldwide phylogeny of Lactarius section Deliciosi inferred from ITS and glyceraldehyde-3-phosphate dehydrogenase gene sequences. Mycologia, November 1, 2007; 99(6): 820 - 832. [Abstract] [Full Text] [PDF]
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A. C. S. Ramos, J. P. Lemos-Filho, R. A. Ribeiro, F. R. Santos, and M. B. Lovato Phylogeography of the Tree Hymenaea stigonocarpa (Fabaceae: Caesalpinioideae) and the Influence of Quaternary Climate Changes in the Brazilian Cerrado Ann. Bot., November 1, 2007; 100(6): 1219 - 1228. [Abstract] [Full Text] [PDF]
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H. G. Parker, A. V. Kukekova, D. T. Akey, O. Goldstein, E. F. Kirkness, K. C. Baysac, D. S. Mosher, G. D. Aguirre, G. M. Acland, and E. A. Ostrander Breed relationships facilitate fine-mapping studies: A 7.8-kb deletion cosegregates with Collie eye anomaly across multiple dog breeds Genome Res., November 1, 2007; 17(11): 1562 - 1571. [Abstract] [Full Text] [PDF]
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L. Gordon, S. Yang, M. Tran-Gyamfi, D. Baggott, M. Christensen, A. Hamilton, R. Crooijmans, M. Groenen, S. Lucas, I. Ovcharenko, et al. Comparative analysis of chicken chromosome 28 provides new clues to the evolutionary fragility of gene-rich vertebrate regions Genome Res., November 1, 2007; 17(11): 1603 - 1613. [Abstract] [Full Text] [PDF]
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