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Published online before print
July 19, 2002, 10.1101/gr.473902
Vol. 12, Issue 8, 1231-1245, August 2002
LETTER
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  J. D. Ellis, D. Lleres, M. Denegri, A. I. Lamond, and J. F. Caceres Spatial mapping of splicing factor complexes involved in exon and intron definition J. Cell Biol., June 16, 2008; 181(6): 921 - 934. [Abstract] [Full Text] [PDF]
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 S.-W. Jang, S.-j. Yang, A. Ehlen, S. Dong, H. Khoury, J. Chen, J. L. Persson, and K. Ye Serine/Arginine Protein-Specific Kinase 2 Promotes Leukemia Cell Proliferation by Phosphorylating Acinus and Regulating Cyclin A1 Cancer Res., June 15, 2008; 68(12): 4559 - 4570. [Abstract] [Full Text] [PDF]
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 Z. Vucetic, Z. Zhang, J. Zhao, F. Wang, K. J. Soprano, and D. R. Soprano Acinus-S' Represses Retinoic Acid Receptor (RAR)-Regulated Gene Expression through Interaction with the B Domains of RARs Mol. Cell. Biol., April 15, 2008; 28(8): 2549 - 2558. [Abstract] [Full Text] [PDF]
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 J. L. Pearson, T. J. Robinson, M. J. Munoz, A. R. Kornblihtt, and M. A. Garcia-Blanco Identification of the Cellular Targets of the Transcription Factor TCERG1 Reveals a Prevalent Role in mRNA Processing J. Biol. Chem., March 21, 2008; 283(12): 7949 - 7961. [Abstract] [Full Text] [PDF]
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R. H. Hovhannisyan and R. P. Carstens Heterogeneous Ribonucleoprotein M Is a Splicing Regulatory Protein That Can Enhance or Silence Splicing of Alternatively Spliced Exons J. Biol. Chem., December 14, 2007; 282(50): 36265 - 36274. [Abstract] [Full Text] [PDF]
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 S. Valadkhan, A. Mohammadi, C. Wachtel, and J. L. Manley Protein-free spliceosomal snRNAs catalyze a reaction that resembles the first step of splicing RNA, December 1, 2007; 13(12): 2300 - 2311. [Abstract] [Full Text] [PDF]
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 V. Kulasingam and E. P. Diamandis Proteomics Analysis of Conditioned Media from Three Breast Cancer Cell Lines: A Mine for Biomarkers and Therapeutic Targets Mol. Cell. Proteomics, November 1, 2007; 6(11): 1997 - 2011. [Abstract] [Full Text] [PDF]
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 G. D'Antona, L. Brocca, O. Pansarasa, C. Rinaldi, R. Tupler, and R. Bottinelli Structural and functional alterations of muscle fibres in the novel mouse model of facioscapulohumeral muscular dystrophy J. Physiol., November 1, 2007; 584(3): 997 - 1009. [Abstract] [Full Text] [PDF]
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K.-W. Tsai, W.-Y. Tarn, and W.-c. Lin Wobble Splicing Reveals the Role of the Branch Point Sequence-to-NAGNAG Region in 3' Tandem Splice Site Selection Mol. Cell. Biol., August 15, 2007; 27(16): 5835 - 5848. [Abstract] [Full Text] [PDF]
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Q. Liu, G. Tan, N. Levenkova, T. Li, E. N. Pugh Jr., J. J. Rux, D. W. Speicher, and E. A. Pierce The Proteome of the Mouse Photoreceptor Sensory Cilium Complex Mol. Cell. Proteomics, August 1, 2007; 6(8): 1299 - 1317. [Abstract] [Full Text] [PDF]
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 J. Yang, T. Valineva, J. Hong, T. Bu, Z. Yao, O. N. Jensen, M. J. Frilander, and O. Silvennoinen Transcriptional co-activator protein p100 interacts with snRNP proteins and facilitates the assembly of the spliceosome Nucleic Acids Res., July 26, 2007; 35(13): 4485 - 4494. [Abstract] [Full Text] [PDF]
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C. Jalal, H. Uhlmann-Schiffler, and H. Stahl Redundant role of DEAD box proteins p68 (Ddx5) and p72/p82 (Ddx17) in ribosome biogenesis and cell proliferation Nucleic Acids Res., June 28, 2007; 35(11): 3590 - 3601. [Abstract] [Full Text] [PDF]
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Y.-I G. Chen, R. E. Moore, H. Y. Ge, M. K. Young, T. D. Lee, and S. W. Stevens Proteomic analysis of in vivo-assembled pre-mRNA splicing complexes expands the catalog of participating factors Nucleic Acids Res., June 9, 2007; 35(12): 3928 - 3944. [Abstract] [Full Text] [PDF]
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M. Heller, E. Schlappritzi, D. Stalder, J.-M. Nuoffer, and A. Haeberli Compositional Protein Analysis of High Density Lipoproteins in Hypercholesterolemia by Shotgun LC-MS/MS and Probabilistic Peptide Scoring Mol. Cell. Proteomics, June 1, 2007; 6(6): 1059 - 1072. [Abstract] [Full Text] [PDF]
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 T. Chung, C. S. Kim, H. N. Nguyen, R. B. Meeley, and B. A. Larkins The Maize Zmsmu2 Gene Encodes a Putative RNA-Splicing Factor That Affects Protein Synthesis and RNA Processing during Endosperm Development Plant Physiology, June 1, 2007; 144(2): 821 - 835. [Abstract] [Full Text] [PDF]
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 R. J. Osborne, S. Welle, S. L. Venance, C. A. Thornton, and R. Tawil Expression profile of FSHD supports a link between retinal vasculopathy and muscular dystrophy Neurology, February 20, 2007; 68(8): 569 - 577. [Abstract] [Full Text] [PDF]
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 K. A. Sergeant, C. F. Bourgeois, C. Dalgliesh, J. P. Venables, J. Stevenin, and D. J. Elliott Alternative RNA splicing complexes containing the scaffold attachment factor SAFB2 J. Cell Sci., January 15, 2007; 120(2): 309 - 319. [Abstract] [Full Text] [PDF]
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C. Merz, H. Urlaub, C. L. Will, and R. Luhrmann Protein composition of human mRNPs spliced in vitro and differential requirements for mRNP protein recruitment RNA, January 1, 2007; 13(1): 116 - 128. [Abstract] [Full Text] [PDF]
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T. Kubo, T. Wada, Y. Yamaguchi, A. Shimizu, and H. Handa Knock-down of 25 kDa subunit of cleavage factor Im in Hela cells alters alternative polyadenylation within 3'-UTRs Nucleic Acids Res., December 4, 2006; 34(21): 6264 - 6271. [Abstract] [Full Text] [PDF]
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A. H. Mangs, H. J.L. Speirs, C. Goy, D. J. Adams, M. A. Markus, and B. J. Morris XE7: A novel splicing factor that interacts with ASF/SF2 and ZNF265 Nucleic Acids Res., October 18, 2006; 34(17): 4976 - 4986. [Abstract] [Full Text] [PDF]
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K.-T. Jeang and V. Yedavalli Role of RNA helicases in HIV-1 replication Nucleic Acids Res., September 10, 2006; 34(15): 4198 - 4205. [Abstract] [Full Text] [PDF]
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J. Deckert, K. Hartmuth, D. Boehringer, N. Behzadnia, C. L. Will, B. Kastner, H. Stark, H. Urlaub, and R. Luhrmann Protein Composition and Electron Microscopy Structure of Affinity-Purified Human Spliceosomal B Complexes Isolated under Physiological Conditions. Mol. Cell. Biol., July 1, 2006; 26(14): 5528 - 5543. [Abstract] [Full Text] [PDF]
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S. Liu, R. Rauhut, H.-P. Vornlocher, and R. Luhrmann The network of protein-protein interactions within the human U4/U6.U5 tri-snRNP RNA, July 1, 2006; 12(7): 1418 - 1430. [Abstract] [Full Text] [PDF]
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 B.-h. Lee, A. Kapoor, J. Zhu, and J.-K. Zhu STABILIZED1, a Stress-Upregulated Nuclear Protein, Is Required for Pre-mRNA Splicing, mRNA Turnover, and Stress Tolerance in Arabidopsis PLANT CELL, July 1, 2006; 18(7): 1736 - 1749. [Abstract] [Full Text] [PDF]
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 M. E. Barrios-Llerena, P. K. Chong, C. S. Gan, A. P. L. Snijders, K. F. Reardon, and P. C. Wright Shotgun proteomics of cyanobacteria--applications of experimental and data-mining techniques Brief Funct Genomic Proteomic, June 1, 2006; 5(2): 121 - 132. [Abstract] [Full Text] [PDF]
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A. P. Joselin, K. Schulze-Osthoff, and C. Schwerk Loss of Acinus Inhibits Oligonucleosomal DNA Fragmentation but Not Chromatin Condensation during Apoptosis J. Biol. Chem., May 5, 2006; 281(18): 12475 - 12484. [Abstract] [Full Text] [PDF]
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M. GULLEROVA, A. BARTA, and Z. J. LORKOVIC AtCyp59 is a multidomain cyclophilin from Arabidopsis thaliana that interacts with SR proteins and the C-terminal domain of the RNA polymerase II RNA, April 1, 2006; 12(4): 631 - 643. [Abstract] [Full Text] [PDF]
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P. BELLARE, A. K. KUTACH, A. K. RINES, C. GUTHRIE, and E. J. SONTHEIMER Ubiquitin binding by a variant Jab1/MPN domain in the essential pre-mRNA splicing factor Prp8p RNA, February 1, 2006; 12(2): 292 - 302. [Abstract] [Full Text] [PDF]
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 N. L. Barbosa-Morais, M. Carmo-Fonseca, and S. Aparicio Systematic genome-wide annotation of spliceosomal proteins reveals differential gene family expansion Genome Res., January 1, 2006; 16(1): 66 - 77. [Abstract] [Full Text] [PDF]
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S. McCracken, D. Longman, E. Marcon, P. Moens, M. Downey, J. A. Nickerson, R. Jessberger, A. Wilde, J. F. Caceres, A. Emili, et al. Proteomic Analysis of SRm160-containing Complexes Reveals a Conserved Association with Cohesin J. Biol. Chem., December 23, 2005; 280(51): 42227 - 42236. [Abstract] [Full Text] [PDF]
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M. Llorian, M. Beullens, B. Lesage, E. Nicolaescu, L. Beke, W. Landuyt, J.-M. Ortiz, and M. Bollen Nucleocytoplasmic Shuttling of the Splicing Factor SIPP1 J. Biol. Chem., November 18, 2005; 280(46): 38862 - 38869. [Abstract] [Full Text] [PDF]
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F. J. Dieguez-Acuna, S. A. Gerber, S. Kodama, J. E. Elias, S. A. Beausoleil, D. Faustman, and S. P. Gygi Characterization of Mouse Spleen Cells by Subtractive Proteomics Mol. Cell. Proteomics, October 1, 2005; 4(10): 1459 - 1470. [Abstract] [Full Text] [PDF]
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S. Gorski and T. Misteli Systems biology in the cell nucleus J. Cell Sci., September 15, 2005; 118(18): 4083 - 4092. [Abstract] [Full Text] [PDF]
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C. Lin, L. Yang, J. J. Yang, Y. Huang, and Z.-R. Liu ATPase/Helicase Activities of p68 RNA Helicase Are Required for Pre-mRNA Splicing but Not for Assembly of the Spliceosome Mol. Cell. Biol., September 1, 2005; 25(17): 7484 - 7493. [Abstract] [Full Text] [PDF]
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Y. Ishihama, Y. Oda, T. Tabata, T. Sato, T. Nagasu, J. Rappsilber, and M. Mann Exponentially Modified Protein Abundance Index (emPAI) for Estimation of Absolute Protein Amount in Proteomics by the Number of Sequenced Peptides per Protein Mol. Cell. Proteomics, September 1, 2005; 4(9): 1265 - 1272. [Abstract] [Full Text] [PDF]
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L. I.A. Calderon-Villalobos, C. Kuhnle, E. M.N. Dohmann, H. Li, M. Bevan, and C. Schwechheimer The Evolutionarily Conserved TOUGH Protein Is Required for Proper Development of Arabidopsis thaliana PLANT CELL, September 1, 2005; 17(9): 2473 - 2485. [Abstract] [Full Text] [PDF]
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J. CHUSAINOW, P. M. AJUH, L. TRINKLE-MULCAHY, J. E. SLEEMAN, J. ELLENBERG, and A. I. LAMOND FRET analyses of the U2AF complex localize the U2AF35/U2AF65 interaction in vivo and reveal a novel self-interaction of U2AF35 RNA, August 1, 2005; 11(8): 1201 - 1214. [Abstract] [Full Text] [PDF]
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M. Girard, P. D. Allaire, P. S. McPherson, and F. Blondeau Non-stoichiometric Relationship between Clathrin Heavy and Light Chains Revealed by Quantitative Comparative Proteomics of Clathrin-coated Vesicles from Brain and Liver Mol. Cell. Proteomics, August 1, 2005; 4(8): 1145 - 1154. [Abstract] [Full Text] [PDF]
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Y. He, M. A. Brown, J. A. Rothnagel, N. A. Saunders, and R. Smith Roles of heterogeneous nuclear ribonucleoproteins A and B in cell proliferation J. Cell Sci., July 15, 2005; 118(14): 3173 - 3183. [Abstract] [Full Text] [PDF]
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D. Auboeuf, D. H. Dowhan, M. Dutertre, N. Martin, S. M. Berget, and B. W. O'Malley A Subset of Nuclear Receptor Coregulators Act as Coupling Proteins during Synthesis and Maturation of RNA Transcripts Mol. Cell. Biol., July 1, 2005; 25(13): 5307 - 5316. [Full Text] [PDF]
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M. J. Roth, A. J. Forbes, M. T. Boyne II, Y.-B. Kim, D. E. Robinson, and N. L. Kelleher Precise and Parallel Characterization of Coding Polymorphisms, Alternative Splicing, and Modifications in Human Proteins by Mass Spectrometry Mol. Cell. Proteomics, July 1, 2005; 4(7): 1002 - 1008. [Abstract] [Full Text] [PDF]
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 S. Masuda, R. Das, H. Cheng, E. Hurt, N. Dorman, and R. Reed Recruitment of the human TREX complex to mRNA during splicing Genes & Dev., July 1, 2005; 19(13): 1512 - 1517. [Abstract] [Full Text] [PDF]
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K. Venkataraman, K. M. Brown, and G. M. Gilmartin Analysis of a noncanonical poly(A) site reveals a tripartite mechanism for vertebrate poly(A) site recognition Genes & Dev., June 1, 2005; 19(11): 1315 - 1327. [Abstract] [Full Text] [PDF]
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R. J. GRAINGER and J. D. BEGGS Prp8 protein: At the heart of the spliceosome RNA, May 1, 2005; 11(5): 533 - 557. [Abstract] [Full Text] [PDF]
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L. Miccoli, I. Frouin, O. Novac, D. Di Paola, F. Harper, M. Zannis-Hadjopoulos, G. Maga, D. S. F. Biard, and J. F. Angulo The Human Stress-Activated Protein kin17 Belongs to the Multiprotein DNA Replication Complex and Associates In Vivo with Mammalian Replication Origins Mol. Cell. Biol., May 1, 2005; 25(9): 3814 - 3830. [Abstract] [Full Text] [PDF]
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N. Shomron, M. Alberstein, M. Reznik, and G. Ast Stress alters the subcellular distribution of hSlu7 and thus modulates alternative splicing J. Cell Sci., March 15, 2005; 118(6): 1151 - 1159. [Abstract] [Full Text] [PDF]
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X.-S. Jiang, J. Dai, Q.-H. Sheng, L. Zhang, Q.-C. Xia, J.-R. Wu, and R. Zeng A Comparative Proteomic Strategy for Subcellular Proteome Research: Icat Approach Coupled with Bioinformatics Prediction to Ascertain Rat Liver Mitochondrial Proteins and Indication of Mitochondrial Localization for Catalase Mol. Cell. Proteomics, January 1, 2005; 4(1): 12 - 34. [Abstract] [Full Text] [PDF]
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 H. Du, D. F. Tardiff, M. J. Moore, and M. Rosbash Effects of the U1C L13 mutation and temperature regulation of yeast commitment complex formation PNAS, October 12, 2004; 101(41): 14841 - 14846. [Abstract] [Full Text] [PDF]
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L. Liao, D. Cheng, J. Wang, D. M. Duong, T. G. Losik, M. Gearing, H. D. Rees, J. J. Lah, A. I. Levey, and J. Peng Proteomic Characterization of Postmortem Amyloid Plaques Isolated by Laser Capture Microdissection J. Biol. Chem., August 27, 2004; 279(35): 37061 - 37068. [Abstract] [Full Text] [PDF]
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S. Dettwiler, C. Aringhieri, S. Cardinale, W. Keller, and S. M. L. Barabino Distinct Sequence Motifs within the 68-kDa Subunit of Cleavage Factor Im Mediate RNA Binding, Protein-Protein Interactions, and Subcellular Localization J. Biol. Chem., August 20, 2004; 279(34): 35788 - 35797. [Abstract] [Full Text] [PDF]
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E. Buratti, M. Baralle, L. De Conti, D. Baralle, M. Romano, Y. M. Ayala, and F. E. Baralle hnRNP H binding at the 5' splice site correlates with the pathological effect of two intronic mutations in the NF-1 and TSH{beta} genes Nucleic Acids Res., August 6, 2004; 32(14): 4224 - 4236. [Abstract] [Full Text] [PDF]
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A. C. O. Vertegaal, S. C. Ogg, E. Jaffray, M. S. Rodriguez, R. T. Hay, J. S. Andersen, M. Mann, and A. I. Lamond A Proteomic Study of SUMO-2 Target Proteins J. Biol. Chem., August 6, 2004; 279(32): 33791 - 33798. [Abstract] [Full Text] [PDF]
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Z. J. Lorkovic, S. Lopato, M. Pexa, R. Lehner, and A. Barta Interactions of Arabidopsis RS Domain Containing Cyclophilins with SR Proteins and U1 and U11 Small Nuclear Ribonucleoprotein-specific Proteins Suggest Their Involvement in Pre-mRNA Splicing J. Biol. Chem., August 6, 2004; 279(32): 33890 - 33898. [Abstract] [Full Text] [PDF]
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D. E. RYAN, C. H. KIM, J. B. MURRAY, C. J. ADAMS, P. G. STOCKLEY, and J. ABELSON New tertiary constraints between the RNA components of active yeast spliceosomes: A photo-crosslinking study RNA, August 1, 2004; 10(8): 1251 - 1265. [Abstract] [Full Text] [PDF]
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 N. Saitoh, C. S. Spahr, S. D. Patterson, P. Bubulya, A. F. Neuwald, and D. L. Spector Proteomic Analysis of Interchromatin Granule Clusters Mol. Biol. Cell, August 1, 2004; 15(8): 3876 - 3890. [Abstract] [Full Text] [PDF]
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N. Shomron, M. Reznik, and G. Ast Splicing Factor hSlu7 Contains a Unique Functional Domain Required to Retain the Protein within the Nucleus Mol. Biol. Cell, August 1, 2004; 15(8): 3782 - 3795. [Abstract] [Full Text] [PDF]
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G. Pinon-Lataillade, C. Masson, J. Bernardino-Sgherri, V. Henriot, P. Mauffrey, Y. Frobert, S. Araneda, and J. F. Angulo KIN17 encodes an RNA-binding protein and is expressed during mouse spermatogenesis J. Cell Sci., July 15, 2004; 117(16): 3691 - 3702. [Abstract] [Full Text] [PDF]
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