![[Feedback]](/icons/banner/feedbackACT.gif){kind=icon}
![[For Subscribers]](/icons/banner/subscriberACT.gif){kind=icon}
![[Archive]](/icons/banner/archiveACT.gif){kind=icon}
![[Search]](/icons/banner/searchACT.gif){kind=icon}
![[Contents]](/icons/banner/tocACT.gif){kind=icon}
|
|
|
|
|
||
|
Vol. 12, Issue 7, 1075-1079, July 2002
LETTER
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
|
|
 |
|
  C. E. Grover, Y. Yu, R. A. Wing, A. H. Paterson, and J. F. Wendel A Phylogenetic Analysis of Indel Dynamics in the Cotton Genus Mol. Biol. Evol., July 1, 2008; 25(7): 1415 - 1428. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 D.-H. Koo and J. Jiang Extraordinary Tertiary Constrictions of Tripsacum dactyloides Chromosomes: Implications for Karyotype Evolution of Polyploids Driven by Segmental Chromosome Losses Genetics, June 1, 2008; 179(2): 1119 - 1123. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 I. J. Leitch, L. Hanson, K. Y. Lim, A. Kovarik, M. W. Chase, J. J. Clarkson, and A. R. Leitch The Ups and Downs of Genome Size Evolution in Polyploid Species of Nicotiana (Solanaceae) Ann. Bot., April 1, 2008; 101(6): 805 - 814. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
R. Bergero, A. Forrest, and D. Charlesworth Active Miniature Transposons From a Plant Genome and Its Nonrecombining Y Chromosome Genetics, February 1, 2008; 178(2): 1085 - 1092. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
Y. Zhang, X. Li, A. Wang, X. An, Q. Zhang, Y. Pei, L. Gao, W. Ma, R. Appels, and Y. Yan Novel x-Type High-Molecular-Weight Glutenin Genes From Aegilops tauschii and Their Implications on the Wheat Origin and Evolution Mechanism of Glu-D1-1 Proteins Genetics, January 1, 2008; 178(1): 23 - 33. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
J. Cockram, I. J. Mackay, and D. M. O'Sullivan The Role of Double-Stranded Break Repair in the Creation of Phenotypic Diversity at Cereal VRN1 Loci Genetics, December 1, 2007; 177(4): 2535 - 2539. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
J. D. Hollister and B. S. Gaut Population and Evolutionary Dynamics of Helitron Transposable Elements in Arabidopsis thaliana Mol. Biol. Evol., November 1, 2007; 24(11): 2515 - 2524. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 Z. Xu and H. Wang LTR_FINDER: an efficient tool for the prediction of full-length LTR retrotransposons Nucleic Acids Res., July 13, 2007; 35(suppl_2): W265 - W268. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 R. Liu, C. Vitte, J. Ma, A. A. Mahama, T. Dhliwayo, M. Lee, and J. L. Bennetzen A GeneTrek analysis of the maize genome PNAS, July 10, 2007; 104(28): 11844 - 11849. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 T. Wicker and B. Keller Genome-wide comparative analysis of copia retrotransposons in Triticeae, rice, and Arabidopsis reveals conserved ancient evolutionary lineages and distinct dynamics of individual copia families Genome Res., July 1, 2007; 17(7): 1072 - 1081. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
M. J. Oliver, D. Petrov, D. Ackerly, P. Falkowski, and O. M. Schofield The mode and tempo of genome size evolution in eukaryotes Genome Res., May 1, 2007; 17(5): 594 - 601. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
S. D. Nicolas, G. L. Mignon, F. Eber, O. Coriton, H. Monod, V. Clouet, V. Huteau, A. Lostanlen, R. Delourme, B. Chalhoub, et al. Homeologous Recombination Plays a Major Role in Chromosome Rearrangements That Occur During Meiosis of Brassica napus Haploids Genetics, February 1, 2007; 175(2): 487 - 503. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 S. Sherman-Broyles, N. Boggs, A. Farkas, P. Liu, J. Vrebalov, M. E. Nasrallah, and J. B. Nasrallah S Locus Genes and the Evolution of Self-Fertility in Arabidopsis thaliana PLANT CELL, January 1, 2007; 19(1): 94 - 106. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
Q. Wang and H. K. Dooner Eukaryotic Transposable Elements and Genome Evolution Special Feature: Remarkable variation in maize genome structure inferred from haplotype diversity at the bz locus PNAS, November 21, 2006; 103(47): 17644 - 17649. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
C. Vitte and J. L. Bennetzen Eukaryotic Transposable Elements and Genome Evolution Special Feature: Analysis of retrotransposon structural diversity uncovers properties and propensities in angiosperm genome evolution PNAS, November 21, 2006; 103(47): 17638 - 17643. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
Y. Q. Gu, J. Salse, D. Coleman-Derr, A. Dupin, C. Crossman, G. R. Lazo, N. Huo, H. Belcram, C. Ravel, G. Charmet, et al. Types and Rates of Sequence Evolution at the High-Molecular-Weight Glutenin Locus in Hexaploid Wheat and Its Ancestral Genomes Genetics, November 1, 2006; 174(3): 1493 - 1504. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
R. Bruggmann, A. K. Bharti, H. Gundlach, J. Lai, S. Young, A. C. Pontaroli, F. Wei, G. Haberer, G. Fuks, C. Du, et al. Uneven chromosome contraction and expansion in the maize genome Genome Res., October 1, 2006; 16(10): 1241 - 1251. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
J. S. Hawkins, H. Kim, J. D. Nason, R. A. Wing, and J. F. Wendel Differential lineage-specific amplification of transposable elements is responsible for genome size variation in Gossypium Genome Res., October 1, 2006; 16(10): 1252 - 1261. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
O. Paun and E. Horandl Evolution of Hypervariable Microsatellites in Apomictic Polyploid Lineages of Ranunculus carpaticola: Directional Bias at Dinucleotide Loci Genetics, September 1, 2006; 174(1): 387 - 398. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
A. PECINKA, P. SUCHANKOVA, M. A. LYSAK, B. TRAVNICEK, and J. DOLEZEL Nuclear DNA Content Variation among Central European Koeleria Taxa Ann. Bot., July 1, 2006; 98(1): 117 - 122. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
P. Neumann, A. Koblizkova, A. Navratilova, and J. Macas Significant Expansion of Vicia pannonica Genome Size Mediated by Amplification of a Single Type of Giant Retroelement Genetics, June 1, 2006; 173(2): 1047 - 1056. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
R. Fujimoto, K. Okazaki, E. Fukai, M. Kusaba, and T. Nishio Comparison of the Genome Structure of the Self-Incompatibility (S) Locus in Interspecific Pairs of S Haplotypes Genetics, June 1, 2006; 173(2): 1157 - 1167. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
H.-F. Kuo, K. M. Olsen, and E. J. Richards Natural Variation in a Subtelomeric Region of Arabidopsis: Implications for the Genomic Dynamics of a Chromosome End Genetics, May 1, 2006; 173(1): 401 - 417. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
A. E. Hall, G. C. Kettler, and D. Preuss Dynamic evolution at pericentromeres Genome Res., March 1, 2006; 16(3): 355 - 364. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
J. G. Walling, R. Shoemaker, N. Young, J. Mudge, and S. Jackson Chromosome-Level Homeology in Paleopolyploid Soybean (Glycine max) Revealed Through Integration of Genetic and Chromosome Maps Genetics, March 1, 2006; 172(3): 1893 - 1900. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
J. Ma and S. A. Jackson Retrotransposon accumulation and satellite amplification mediated by segmental duplication facilitate centromere expansion in rice Genome Res., February 1, 2006; 16(2): 251 - 259. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
J. Ma and J. L. Bennetzen Recombination, rearrangement, reshuffling, and divergence in a centromeric region of rice PNAS, January 10, 2006; 103(2): 383 - 388. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
J. S.S. Ammiraju, M. Luo, J. L. Goicoechea, W. Wang, D. Kudrna, C. Mueller, J. Talag, H. Kim, N. B. Sisneros, B. Blackmon, et al. The Oryza bacterial artificial chromosome library resource: Construction and analysis of 12 deep-coverage large-insert BAC libraries that represent the 10 genome types of the genus Oryza Genome Res., January 1, 2006; 16(1): 140 - 147. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
M. Boulesteix, M. Weiss, and C. Biemont Differences in Genome Size Between Closely Related Species: The Drosophila melanogaster Species Subgroup Mol. Biol. Evol., January 1, 2006; 23(1): 162 - 167. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 H. Weiss-Schneeweiss, J. Greilhuber, and G. M. Schneeweiss Genome size evolution in holoparasitic Orobanche (Orobanchaceae) and related genera Am. J. Botany, December 1, 2005; 93(1): 148 - 156. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
J.-S. Kim, M. N. Islam-Faridi, P. E. Klein, D. M. Stelly, H. J. Price, R. R. Klein, and J. E. Mullet Comprehensive Molecular Cytogenetic Analysis of Sorghum Genome Architecture: Distribution of Euchromatin, Heterochromatin, Genes and Recombination in Comparison to Rice Genetics, December 1, 2005; 171(4): 1963 - 1976. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
L. N. van de Lagemaat, L. Gagnier, P. Medstrand, and D. L. Mager Genomic deletions and precise removal of transposable elements mediated by short identical DNA segments in primates Genome Res., September 1, 2005; 15(9): 1243 - 1249. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
J. Dvorak and E. D. Akhunov Tempos of Gene Locus Deletions and Duplications and Their Relationship to Recombination Rate During Diploid and Polyploid Evolution in the Aegilops-Triticum Alliance Genetics, September 1, 2005; 171(1): 323 - 332. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 G. Caetano-Anolles Evolution of Genome Size in the Grasses Crop Sci., August 1, 2005; 45(5): 1809 - 1816. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 G. Tapia, I. Verdugo, M. Yanez, I. Ahumada, C. Theoduloz, C. Cordero, F. Poblete, E. Gonzalez, and S. Ruiz-Lara Involvement of Ethylene in Stress-Induced Expression of the TLC1.1 Retrotransposon from Lycopersicon chilense Dun. Plant Physiology, August 1, 2005; 138(4): 2075 - 2086. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
J. Ma, P. SanMiguel, J. Lai, J. Messing, and J. L. Bennetzen DNA Rearrangement in Orthologous Orp Regions of the Maize, Rice and Sorghum Genomes Genetics, July 1, 2005; 170(3): 1209 - 1220. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
J.-Y. Lin, B. H. Jacobus, P. SanMiguel, J. G. Walling, Y. Yuan, R. C. Shoemaker, N. D. Young, and S. A. Jackson Pericentromeric Regions of Soybean (Glycine max L. Merr.) Chromosomes Consist of Retroelements and Tandemly Repeated DNA and Are Structurally and Evolutionarily Labile Genetics, July 1, 2005; 170(3): 1221 - 1230. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
R. Guyot, X. Cheng, Y. Su, Z. Cheng, E. Schlagenhauf, B. Keller, and H.-Q. Ling Complex Organization and Evolution of the Tomato Pericentromeric Region at the FER Gene Locus Plant Physiology, July 1, 2005; 138(3): 1205 - 1215. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
C. Y. Huang, N. Grunheit, N. Ahmadinejad, J. N. Timmis, and W. Martin Mutational Decay and Age of Chloroplast and Mitochondrial Genomes Transferred Recently to Angiosperm Nuclear Chromosomes Plant Physiology, July 1, 2005; 138(3): 1723 - 1733. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 J. Brosius Disparity, adaptation, exaptation, bookkeeping, and contingency at the genome level Paleobiology, June 1, 2005; 31(2_Suppl): 1 - 16. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
E. Isidore, B. Scherrer, B. Chalhoub, C. Feuillet, and B. Keller Ancient haplotypes resulting from extensive molecular rearrangements in the wheat A genome have been maintained in species of three different ploidy levels Genome Res., April 1, 2005; 15(4): 526 - 536. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
N. Chantret, J. Salse, F. Sabot, S. Rahman, A. Bellec, B. Laubin, I. Dubois, C. Dossat, P. Sourdille, P. Joudrier, et al. Molecular Basis of Evolutionary Events That Shaped the Hardness Locus in Diploid and Polyploid Wheat Species (Triticum and Aegilops) PLANT CELL, April 1, 2005; 17(4): 1033 - 1045. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
K. Nagaki, P. Neumann, D. Zhang, S. Ouyang, C. R. Buell, Z. Cheng, and J. Jiang Structure, Divergence, and Distribution of the CRR Centromeric Retrotransposon Family in Rice Mol. Biol. Evol., April 1, 2005; 22(4): 845 - 855. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
S. Brunner, K. Fengler, M. Morgante, S. Tingey, and A. Rafalski Evolution of DNA Sequence Nonhomologies among Maize Inbreds PLANT CELL, February 1, 2005; 17(2): 343 - 360. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
J. L. BENNETZEN, J. MA, and K. M. DEVOS Mechanisms of Recent Genome Size Variation in Flowering Plants Ann. Bot., January 1, 2005; 95(1): 127 - 132. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
T. R. GREGORY The C-value Enigma in Plants and Animals: A Review of Parallels and an Appeal for Partnership Ann. Bot., January 1, 2005; 95(1): 133 - 146. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
I. J. LEITCH, D. E. SOLTIS, P. S. SOLTIS, and M. D. BENNETT Evolution of DNA Amounts Across Land Plants (Embryophyta) Ann. Bot., January 1, 2005; 95(1): 207 - 217. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 H. Puchta The repair of double-strand breaks in plants: mechanisms and consequences for genome evolution J. Exp. Bot., January 1, 2005; 56(409): 1 - 14. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
J. Dvorak, Z.-L. Yang, F. M. You, and M.-C. Luo Deletion Polymorphism in Wheat Chromosome Regions With Contrasting Recombination Rates Genetics, November 1, 2004; 168(3): 1665 - 1675. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
E. A. Kellogg and J. L. Bennetzen The evolution of nuclear genome structure in seed plants Am. J. Botany, October 1, 2004; 91(10): 1709 - 1725. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
E. Richly and D. Leister NUPTs in Sequenced Eukaryotes and Their Genomic Organization in Relation to NUMTs Mol. Biol. Evol., October 1, 2004; 21(10): 1972 - 1980. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
J. Ma and J. L. Bennetzen Inaugural Article: Rapid recent growth and divergence of rice nuclear genomes PNAS, August 24, 2004; 101(34): 12404 - 12410. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
C. E. Grover, H. Kim, R. A. Wing, A. H. Paterson, and J. F. Wendel Incongruent Patterns of Local and Global Genome Size Evolution in Cotton Genome Res., August 1, 2004; 14(8): 1474 - 1482. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
G. Blanc and K. H. Wolfe Widespread Paleopolyploidy in Model Plant Species Inferred from Age Distributions of Duplicate Genes PLANT CELL, July 1, 2004; 16(7): 1667 - 1678. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
E. Richly and D. Leister NUMTs in Sequenced Eukaryotic Genomes Mol. Biol. Evol., June 1, 2004; 21(6): 1081 - 1084. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
J. Ma, K. M. Devos, and J. L. Bennetzen Analyses of LTR-Retrotransposon Structures Reveal Recent and Rapid Genomic DNA Loss in Rice Genome Res., May 1, 2004; 14(5): 860 - 869. [Abstract] [Full Text] [PDF]
|
|
|
|
|
|
X. Zhang and S. R. Wessler Genome-wide comparative analysis of the transposable elements in the related species Arabidopsis thaliana and Brassica oleracea PNAS, April 13, 2004; 101(15): 5589 - 5594. [Abstract] [Full Text] [PDF]
|
|
|
|
 |
|
 E. E. Eichler and D. Sankoff Structural Dynamics of Eukaryotic Chromosome Evolution Science, August 8, 2003; 301(5634): 793 - 797. [Abstract] [Full Text] [PDF]
|
|
