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Vol. 12, Issue 7, 1060-1067, July 2002
LETTER
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  Z. Tiran, A. Oren, C. Hermesh, G. Rotman, Z. Levine, H. Amitai, T. Handelsman, M. Beiman, A. Chen, D. Landesman-Milo, et al. A Novel Recombinant Soluble Splice Variant of Met Is a Potent Antagonist of the Hepatocyte Growth Factor/Scatter Factor-Met Pathway Clin. Cancer Res., July 15, 2008; 14(14): 4612 - 4621. [Abstract] [Full Text] [PDF]
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 O. Ram, S. Schwartz, and G. Ast Multifactorial Interplay Controls the Splicing Profile of Alu-Derived Exons Mol. Cell. Biol., May 15, 2008; 28(10): 3513 - 3525. [Abstract] [Full Text] [PDF]
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 N. Gal-Mark, S. Schwartz, and G. Ast Alternative splicing of Alu exons--two arms are better than one Nucleic Acids Res., April 1, 2008; 36(6): 2012 - 2023. [Abstract] [Full Text] [PDF]
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 T. Sasaki, H. Nishihara, M. Hirakawa, K. Fujimura, M. Tanaka, N. Kokubo, C. Kimura-Yoshida, I. Matsuo, K. Sumiyama, N. Saitou, et al. Possible involvement of SINEs in mammalian-specific brain formation PNAS, March 18, 2008; 105(11): 4220 - 4225. [Abstract] [Full Text] [PDF]
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 V. P. Belancio, D. J. Hedges, and P. Deininger Mammalian non-LTR retrotransposons: For better or worse, in sickness and in health Genome Res., March 1, 2008; 18(3): 343 - 358. [Abstract] [Full Text] [PDF]
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A. Levy, N. Sela, and G. Ast TranspoGene and microTranspoGene: transposed elements influence on the transcriptome of seven vertebrates and invertebrates Nucleic Acids Res., January 11, 2008; 36(suppl_1): D47 - D52. [Abstract] [Full Text] [PDF]
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 D. Sellis, A. Provata, and Y. Almirantis Alu and LINE1 Distributions in the Human Chromosomes: Evidence of Global Genomic Organization Expressed in the Form of Power Laws Mol. Biol. Evol., November 1, 2007; 24(11): 2385 - 2399. [Abstract] [Full Text] [PDF]
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 R. Sorek The birth of new exons: Mechanisms and evolutionary consequences RNA, October 1, 2007; 13(10): 1603 - 1608. [Abstract] [Full Text] [PDF]
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M. Krull, M. Petrusma, W. Makalowski, J. Brosius, and J. Schmitz Functional persistence of exonized mammalian-wide interspersed repeat elements (MIRs) Genome Res., August 1, 2007; 17(8): 1139 - 1145. [Abstract] [Full Text] [PDF]
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 H. Ner-Gaon, N. Leviatan, E. Rubin, and R. Fluhr Comparative Cross-Species Alternative Splicing in Plants Plant Physiology, July 1, 2007; 144(3): 1632 - 1641. [Abstract] [Full Text] [PDF]
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A. V. Alekseyenko, N. Kim, and C. J. Lee Global analysis of exon creation versus loss and the role of alternative splicing in 17 vertebrate genomes RNA, May 1, 2007; 13(5): 661 - 670. [Abstract] [Full Text] [PDF]
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M. Raponi, F. E. Baralle, and F. Pagani Reduced splicing efficiency induced by synonymous substitutions may generate a substrate for natural selection of new splicing isoforms: the case of CFTR exon 12 Nucleic Acids Res., January 28, 2007; 35(2): 606 - 613. [Abstract] [Full Text] [PDF]
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D. Zhuo, R. Madden, S. A. Elela, and B. Chabot Modern origin of numerous alternatively spliced human introns from tandem arrays PNAS, January 16, 2007; 104(3): 882 - 886. [Abstract] [Full Text] [PDF]
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 R. J. Dixon, I. C. Eperon, and N. J. Samani Complementary intron sequence motifs associated with human exon repetition: a role for intragenic, inter-transcript interactions in gene expression Bioinformatics, January 15, 2007; 23(2): 150 - 155. [Abstract] [Full Text] [PDF]
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E. Kim, A. Magen, and G. Ast Different levels of alternative splicing among eukaryotes Nucleic Acids Res., January 12, 2007; 35(1): 125 - 131. [Abstract] [Full Text] [PDF]
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J. Hasler and K. Strub Alu elements as regulators of gene expression Nucleic Acids Res., November 14, 2006; 34(19): 5491 - 5497. [Abstract] [Full Text] [PDF]
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X. H.-F. Zhang and L. A. Chasin Comparison of multiple vertebrate genomes reveals the birth and evolution of human exons PNAS, September 5, 2006; 103(36): 13427 - 13432. [Abstract] [Full Text] [PDF]
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D. B. Malko, V. J. Makeev, A. A. Mironov, and M. S. Gelfand Evolution of exon-intron structure and alternative splicing in fruit flies and malarial mosquito genomes Genome Res., April 1, 2006; 16(4): 505 - 509. [Abstract] [Full Text] [PDF]
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V. P. Belancio, D. J. Hedges, and P. Deininger LINE-1 RNA splicing and influences on mammalian gene expression Nucleic Acids Res., March 22, 2006; 34(5): 1512 - 1521. [Abstract] [Full Text] [PDF]
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R. Shemesh, A. Novik, S. Edelheit, and R. Sorek Genomic fossils as a snapshot of the human transcriptome PNAS, January 31, 2006; 103(5): 1364 - 1369. [Abstract] [Full Text] [PDF]
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P. Akiva, A. Toporik, S. Edelheit, Y. Peretz, A. Diber, R. Shemesh, A. Novik, and R. Sorek Transcription-mediated gene fusion in the human genome Genome Res., January 1, 2006; 16(1): 30 - 36. [Abstract] [Full Text] [PDF]
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W. Wang and E. F. Kirkness Short interspersed elements (SINEs) are a major source of canine genomic diversity Genome Res., December 1, 2005; 15(12): 1798 - 1808. [Abstract] [Full Text] [PDF]
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C. L. ZHENG, X.-D. FU, and M. GRIBSKOV Characteristics and regulatory elements defining constitutive splicing and different modes of alternative splicing in human and mouse RNA, December 1, 2005; 11(12): 1777 - 1787. [Abstract] [Full Text] [PDF]
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B. P. Cusack and K. H. Wolfe Changes in Alternative Splicing of Human and Mouse Genes Are Accompanied by Faster Evolution of Constitutive Exons Mol. Biol. Evol., November 1, 2005; 22(11): 2198 - 2208. [Abstract] [Full Text] [PDF]
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Y. Xing and C. Lee Assessing the application of Ka/Ks ratio test to alternatively spliced exons Bioinformatics, October 1, 2005; 21(19): 3701 - 3703. [Abstract] [Full Text] [PDF]
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Y. Xing and C. Lee Colloquium Paper: Evidence of functional selection pressure for alternative splicing events that accelerate evolution of protein subsequences PNAS, September 20, 2005; 102(38): 13526 - 13531. [Abstract] [Full Text] [PDF]
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W. Wang, H. Zheng, S. Yang, H. Yu, J. Li, H. Jiang, J. Su, L. Yang, J. Zhang, J. McDermott, et al. Origin and evolution of new exons in rodents Genome Res., September 1, 2005; 15(9): 1258 - 1264. [Abstract] [Full Text] [PDF]
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H. Lei and I. Vorechovsky Identification of Splicing Silencers and Enhancers in Sense Alus: a Role for Pseudoacceptors in Splice Site Repression Mol. Cell. Biol., August 15, 2005; 25(16): 6912 - 6920. [Abstract] [Full Text] [PDF]
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M. Krull, J. Brosius, and J. Schmitz Alu-SINE Exonization: En Route to Protein-Coding Function Mol. Biol. Evol., August 1, 2005; 22(8): 1702 - 1711. [Abstract] [Full Text] [PDF]
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H. Lei, I. N. M. Day, and I. Vorechovsky Exonization of AluYa5 in the human ACE gene requires mutations in both 3' and 5' splice sites and is facilitated by a conserved splicing enhancer Nucleic Acids Res., July 14, 2005; 33(12): 3897 - 3906. [Abstract] [Full Text] [PDF]
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 M. Pele, L. Tiret, J.-L. Kessler, S. Blot, and J.-J. Panthier SINE exonic insertion in the PTPLA gene leads to multiple splicing defects and segregates with the autosomal recessive centronuclear myopathy in dog Hum. Mol. Genet., July 1, 2005; 14(13): 1905 - 1906. [Full Text] [PDF]
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M. Pele, L. Tiret, J.-L. Kessler, S. Blot, and J.-J. Panthier SINE exonic insertion in the PTPLA gene leads to multiple splicing defects and segregates with the autosomal recessive centronuclear myopathy in dogs Hum. Mol. Genet., June 1, 2005; 14(11): 1417 - 1427. [Abstract] [Full Text] [PDF]
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 J. Brosius Disparity, adaptation, exaptation, bookkeeping, and contingency at the genome level Paleobiology, June 1, 2005; 31(2_Suppl): 1 - 16. [Abstract] [Full Text] [PDF]
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R. AGRAWAL and G. D. STORMO Editing efficiency of a Drosophila gene correlates with a distant splice site selection RNA, May 1, 2005; 11(5): 563 - 566. [Abstract] [Full Text] [PDF]
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T.-H. Kim, Y.-J. Jeon, W.-Y. Kim, and H.-S. Kim HESAS: HERVs Expression and Structure Analysis System Bioinformatics, April 15, 2005; 21(8): 1699 - 1700. [Abstract] [Full Text] [PDF]
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R. J. Britten The majority of human genes have regions repeated in other human genes PNAS, April 12, 2005; 102(15): 5466 - 5470. [Abstract] [Full Text] [PDF]
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D. Dahary, O. Elroy-Stein, and R. Sorek Naturally occurring antisense: Transcriptional leakage or real overlap? Genome Res., March 1, 2005; 15(3): 364 - 368. [Abstract] [Full Text] [PDF]
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E. Y. Levanon, M. Hallegger, Y. Kinar, R. Shemesh, K. Djinovic-Carugo, G. Rechavi, M. F. Jantsch, and E. Eisenberg Evolutionarily conserved human targets of adenosine to inosine RNA editing Nucleic Acids Res., February 24, 2005; 33(4): 1162 - 1168. [Abstract] [Full Text] [PDF]
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R. J. Britten Coding sequences of functioning human genes derived entirely from mobile element sequences PNAS, November 30, 2004; 101(48): 16825 - 16830. [Abstract] [Full Text] [PDF]
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D. D.Y. Kim, T. T.Y. Kim, T. Walsh, Y. Kobayashi, T. C. Matise, S. Buyske, and A. Gabriel Widespread RNA Editing of Embedded Alu Elements in the Human Transcriptome Genome Res., September 1, 2004; 14(9): 1719 - 1725. [Abstract] [Full Text] [PDF]
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R. Sorek, R. Shemesh, Y. Cohen, O. Basechess, G. Ast, and R. Shamir A Non-EST-Based Method for Exon-Skipping Prediction Genome Res., August 1, 2004; 14(8): 1617 - 1623. [Abstract] [Full Text] [PDF]
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L. F. Franchini, E. W. Ganko, and J. F. McDonald Retrotransposon-Gene Associations Are Widespread Among D. melanogaster Populations Mol. Biol. Evol., July 1, 2004; 21(7): 1323 - 1331. [Abstract] [Full Text] [PDF]
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C.-G. Liu, G. A. Calin, B. Meloon, N. Gamliel, C. Sevignani, M. Ferracin, C. D. Dumitru, M. Shimizu, S. Zupo, M. Dono, et al. An oligonucleotide microchip for genome-wide microRNA profiling in human and mouse tissues PNAS, June 29, 2004; 101(26): 9740 - 9744. [Abstract] [Full Text] [PDF]
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M. Sironi, G. Menozzi, L. Riva, R. Cagliani, G. P. Comi, N. Bresolin, R. Giorda, and U. Pozzoli Silencer elements as possible inhibitors of pseudoexon splicing Nucleic Acids Res., March 19, 2004; 32(5): 1783 - 1791. [Abstract] [Full Text] [PDF]
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 P. Jin, J. Zhang, C. Rowe-Teeter, J. Yang, L. L. Stuve, and G. K. Fu Cloning and Characterization of a GABAA Receptor {gamma}2 Subunit Variant J. Biol. Chem., January 9, 2004; 279(2): 1408 - 1414. [Abstract] [Full Text] [PDF]
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T. Dagan, R. Sorek, E. Sharon, G. Ast, and D. Graur AluGene: a database of Alu elements incorporated within protein-coding genes Nucleic Acids Res., January 1, 2004; 32(90001): D489 - 492. [Abstract] [Full Text] [PDF]
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P. Prasannan, S. Pike, K. Peng, B. Shane, and D. R. Appling Human Mitochondrial C1-Tetrahydrofolate Synthase: GENE STRUCTURE, TISSUE DISTRIBUTION OF THE MRNA, AND IMMUNOLOCALIZATION IN CHINESE HAMSTER OVARY CELLS J. Biol. Chem., October 31, 2003; 278(44): 43178 - 43187. [Abstract] [Full Text] [PDF]
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S. Iwashita, N. Osada, T. Itoh, M. Sezaki, K. Oshima, E. Hashimoto, Y. Kitagawa-Arita, I. Takahashi, T. Masui, K. Hashimoto, et al. A Transposable Element-Mediated Gene Divergence that Directly Produces a Novel Type Bovine Bcnt Protein Including the Endonuclease Domain of RTE-1 Mol. Biol. Evol., September 1, 2003; 20(9): 1556 - 1563. [Abstract] [Full Text] [PDF]
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R. Sorek and G. Ast Intronic Sequences Flanking Alternatively Spliced Exons Are Conserved Between Human and Mouse Genome Res., July 1, 2003; 13(7): 1631 - 1637. [Abstract] [Full Text] [PDF]
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R. N. Nurtdinov, I. I. Artamonova, A. A. Mironov, and M. S. Gelfand Low conservation of alternative splicing patterns in the human and mouse genomes Hum. Mol. Genet., June 1, 2003; 12(11): 1313 - 1320. [Abstract] [Full Text] [PDF]
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 G. Lev-Maor, R. Sorek, N. Shomron, and G. Ast The Birth of an Alternatively Spliced Exon: 3' Splice-Site Selection in Alu Exons Science, May 23, 2003; 300(5623): 1288 - 1291. [Abstract] [Full Text] [PDF]
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R. Sorek and H. M. Safer A novel algorithm for computational identification of contaminated EST libraries Nucleic Acids Res., February 1, 2003; 31(3): 1067 - 1074. [Abstract] [Full Text] [PDF]
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