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Vol. 12, Issue 12, 1827-1836, December 2002
LETTER
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  S. Beisswanger and W. Stephan Evidence that strong positive selection drives neofunctionalization in the tandemly duplicated polyhomeotic genes in Drosophila PNAS, April 8, 2008; 105(14): 5447 - 5452. [Abstract] [Full Text] [PDF]
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 N. Gal-Mark, S. Schwartz, and G. Ast Alternative splicing of Alu exons--two arms are better than one Nucleic Acids Res., April 1, 2008; 36(6): 2012 - 2023. [Abstract] [Full Text] [PDF]
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J. Eddy and N. Maizels Conserved elements with potential to form polymorphic G-quadruplex structures in the first intron of human genes Nucleic Acids Res., March 27, 2008; 36(4): 1321 - 1333. [Abstract] [Full Text] [PDF]
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 A. Goren, E. Kim, M. Amit, R. Bochner, G. Lev-Maor, N. Ahituv, and G. Ast Alternative approach to a heavy weight problem Genome Res., February 1, 2008; 18(2): 214 - 220. [Abstract] [Full Text] [PDF]
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 S. S. Hughes, C. O. Buckley, and D. E. Neafsey Complex Selection on Intron Size in Cryptococcus neoformans Mol. Biol. Evol., February 1, 2008; 25(2): 247 - 253. [Abstract] [Full Text] [PDF]
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J. Coulombe-Huntington and J. Majewski Intron Loss and Gain in Drosophila Mol. Biol. Evol., December 1, 2007; 24(12): 2842 - 2850. [Abstract] [Full Text] [PDF]
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A. M. Resch, L. Carmel, L. Marino-Ramirez, A. Y. Ogurtsov, S. A. Shabalina, I. B. Rogozin, and E. V. Koonin Widespread Positive Selection in Synonymous Sites of Mammalian Genes Mol. Biol. Evol., August 1, 2007; 24(8): 1821 - 1831. [Abstract] [Full Text] [PDF]
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K. Garg and P. Green Differing patterns of selection in alternative and constitutive splice sites Genome Res., July 1, 2007; 17(7): 1015 - 1022. [Abstract] [Full Text] [PDF]
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J. Coulombe-Huntington and J. Majewski Characterization of intron loss events in mammals Genome Res., January 1, 2007; 17(1): 23 - 32. [Abstract] [Full Text] [PDF]
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A. E. Vinogradov 'Genome design' model and multicellular complexity: golden middle Nucleic Acids Res., November 6, 2006; 34(20): 5906 - 5914. [Abstract] [Full Text] [PDF]
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 R. Wang, K. Chong, and T. Wang Divergence in spatial expression patterns and in response to stimuli of tandem-repeat paralogues encoding a novel class of proline-rich proteins in Oryza sativa J. Exp. Bot., August 1, 2006; 57(11): 2887 - 2897. [Abstract] [Full Text] [PDF]
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 A. M. Shearman Oestrogen receptor genetics: a needle that cuts through many haystacks? Eur. Heart J., July 1, 2006; 27(13): 1519 - 1520. [Full Text] [PDF]
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D. L. Halligan and P. D. Keightley Ubiquitous selective constraints in the Drosophila genome revealed by a genome-wide interspecies comparison Genome Res., July 1, 2006; 16(7): 875 - 884. [Abstract] [Full Text] [PDF]
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A. E. Vinogradov "Genome design" model: Evidence from conserved intronic sequence in human-mouse comparison Genome Res., March 1, 2006; 16(3): 347 - 354. [Abstract] [Full Text] [PDF]
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G. H. Perry, B. C. Verrelli, and A. C. Stone Molecular Evolution of the Primate Developmental Genes MSX1 and PAX9 Mol. Biol. Evol., March 1, 2006; 23(3): 644 - 654. [Abstract] [Full Text] [PDF]
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 J. Kralovicova and I. Vorechovsky Position-Dependent Repression and Promotion of DQB1 Intron 3 Splicing by GGGG Motifs J. Immunol., February 15, 2006; 176(4): 2381 - 2388. [Abstract] [Full Text] [PDF]
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R. A. Rollins, F. Haghighi, J. R. Edwards, R. Das, M. Q. Zhang, J. Ju, and T. H. Bestor Large-scale structure of genomic methylation patterns Genome Res., February 1, 2006; 16(2): 157 - 163. [Abstract] [Full Text] [PDF]
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J. L. Parmley, J. V. Chamary, and L. D. Hurst Evidence for Purifying Selection Against Synonymous Mutations in Mammalian Exonic Splicing Enhancers Mol. Biol. Evol., February 1, 2006; 23(2): 301 - 309. [Abstract] [Full Text] [PDF]
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 S. M. Baumgartner-Parzer, R. Lang, L. Wagner, G. Heinze, B. Niederle, K. Kaserer, W. Waldhausl, and H. Vierhapper Polymorphisms in Exon 13 and Intron 14 of the RET Protooncogene: Genetic Modifiers of Medullary Thyroid Carcinoma? J. Clin. Endocrinol. Metab., November 1, 2005; 90(11): 6232 - 6236. [Abstract] [Full Text] [PDF]
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I. K. Gogolevskaya, A. P. Koval, and D. A. Kramerov Evolutionary History of 4.5SH RNA Mol. Biol. Evol., July 1, 2005; 22(7): 1546 - 1554. [Abstract] [Full Text] [PDF]
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X. H-F. Zhang, C. S. Leslie, and L. A. Chasin Dichotomous splicing signals in exon flanks Genome Res., June 1, 2005; 15(6): 768 - 779. [Abstract] [Full Text] [PDF]
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D.-K. Niu, W.-R. Hou, and S.-W. Li mRNA-Mediated Intron Losses: Evidence from Extraordinarily Large Exons Mol. Biol. Evol., June 1, 2005; 22(6): 1475 - 1481. [Abstract] [Full Text] [PDF]
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 G. Marais, P. Nouvellet, P. D. Keightley, and B. Charlesworth Intron Size and Exon Evolution in Drosophila Genetics, May 1, 2005; 170(1): 481 - 485. [Abstract] [Full Text] [PDF]
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 M. Campagnoli, A. Sala, A. Romano, A. Rossi, J. Nauta, B. G.P. Koot, L. Minchiotti, and M. Galliano Novel Nonsense Mutation Causes Analbuminemia in a Moroccan Family Clin. Chem., January 1, 2005; 51(1): 227 - 229. [Full Text] [PDF]
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G. Yeo, S. Hoon, B. Venkatesh, and C. B. Burge Variation in sequence and organization of splicing regulatory elements in vertebrate genes PNAS, November 2, 2004; 101(44): 15700 - 15705. [Abstract] [Full Text] [PDF]
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T. Heller, M. Oellerich, V. W. Armstrong, and N. von Ahsen Rapid Detection of ITPA 94C>A and IVS2 + 21A>C Gene Mutations by Real-Time Fluorescence PCR and in Vitro Demonstration of Effect of ITPA IVS2 + 21A>C Polymorphism on Splicing Efficiency Clin. Chem., November 1, 2004; 50(11): 2182 - 2184. [Full Text] [PDF]
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M. Touchon, A. Arneodo, Y. d'Aubenton-Carafa, and C. Thermes Transcription-coupled and splicing-coupled strand asymmetries in eukaryotic genomes Nucleic Acids Res., September 23, 2004; 32(17): 4969 - 4978. [Abstract] [Full Text] [PDF]
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 J. B. Jowett, K. S. Elliott, J. E. Curran, N. Hunt, K. R. Walder, G. R. Collier, P. Z. Zimmet, and J. Blangero Genetic Variation in BEACON Influences Quantitative Variation in Metabolic Syndrome-Related Phenotypes Diabetes, September 1, 2004; 53(9): 2467 - 2472. [Abstract] [Full Text] [PDF]
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J. M. Comeron Selective and Mutational Patterns Associated With Gene Expression in Humans: Influences on Synonymous Composition and Intron Presence Genetics, July 1, 2004; 167(3): 1293 - 1304. [Abstract] [Full Text] [PDF]
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M. J. Lercher, J.-V. Chamary, and L. D. Hurst Genomic Regionality in Rates of Evolution Is Not Explained by Clustering of Genes of Comparable Expression Profile Genome Res., June 1, 2004; 14(6): 1002 - 1013. [Abstract] [Full Text] [PDF]
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J.-V. Chamary and L. D. Hurst Similar Rates but Different Modes of Sequence Evolution in Introns and at Exonic Silent Sites in Rodents: Evidence for Selectively Driven Codon Usage Mol. Biol. Evol., June 1, 2004; 21(6): 1014 - 1023. [Abstract] [Full Text] [PDF]
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 N. von Ahsen and M. Oellerich The intronic prothrombin 19911A>G polymorphism influences splicing efficiency and modulates effects of the 20210G>A polymorphism on mRNA amount and expression in a stable reporter gene assay system Blood, January 15, 2004; 103(2): 586 - 593. [Abstract] [Full Text] [PDF]
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X. H-F. Zhang, K. A. Heller, I. Hefter, C. S. Leslie, and L. A. Chasin Sequence Information for the Splicing of Human Pre-mRNA Identified by Support Vector Machine Classification Genome Res., December 1, 2003; 13(12): 2637 - 2650. [Abstract] [Full Text] [PDF]
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E. Louie, J. Ott, and J. Majewski Nucleotide Frequency Variation Across Human Genes Genome Res., December 1, 2003; 13(12): 2594 - 2601. [Abstract] [Full Text] [PDF]
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P. D. Keightley and D. J. Gaffney Functional constraints and frequency of deleterious mutations in noncoding DNA of rodents PNAS, November 11, 2003; 100(23): 13402 - 13406. [Abstract] [Full Text] [PDF]
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R. Sorek and G. Ast Intronic Sequences Flanking Alternatively Spliced Exons Are Conserved Between Human and Mouse Genome Res., July 1, 2003; 13(7): 1631 - 1637. [Abstract] [Full Text] [PDF]
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 R. N. Nurtdinov, I. I. Artamonova, A. A. Mironov, and M. S. Gelfand Low conservation of alternative splicing patterns in the human and mouse genomes Hum. Mol. Genet., June 1, 2003; 12(11): 1313 - 1320. [Abstract] [Full Text] [PDF]
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T. J. Haggerty, K. I. Zeller, R. C. Osthus, D. R. Wonsey, and C. V. Dang A strategy for identifying transcription factor binding sites reveals two classes of genomic c-Myc target sites PNAS, April 29, 2003; 100(9): 5313 - 5318. [Abstract] [Full Text] [PDF]
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