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Published online before print
August 16, 2001, 10.1101/gr.164201
Vol. 11, Issue 9, 1527-1540, September 2001
LETTER
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  C. M. Bergman and D. Bensasson Recent LTR retrotransposon insertion contrasts with waves of non-LTR insertion since speciation in Drosophila melanogaster PNAS, July 3, 2007; 104(27): 11340 - 11345. [Abstract] [Full Text] [PDF]
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A. K. Lim and T. Kai Unique germ-line organelle, nuage, functions to repress selfish genetic elements in Drosophila melanogaster PNAS, April 17, 2007; 104(16): 6714 - 6719. [Abstract] [Full Text] [PDF]
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 M. P. Garcia Guerreiro and A. Fontdevila The Evolutionary History of Drosophila buzzatii. XXXVI. Molecular Structural Analysis of Osvaldo Retrotransposon Insertions in Colonizing Populations Unveils Drift Effects in Founder Events Genetics, January 1, 2007; 175(1): 301 - 310. [Abstract] [Full Text] [PDF]
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 N. Polavarapu, N. J. Bowen, and J. F. McDonald Newly Identified Families of Human Endogenous Retroviruses J. Virol., May 1, 2006; 80(9): 4640 - 4642. [Full Text] [PDF]
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R. Jing, M. R. Knox, J. M. Lee, A. V. Vershinin, M. Ambrose, T. H. N. Ellis, and A. J. Flavell Insertional Polymorphism and Antiquity of PDR1 Retrotransposon Insertions in Pisum Species Genetics, October 1, 2005; 171(2): 741 - 752. [Abstract] [Full Text] [PDF]
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F. Casals, M. Caceres, M. H. Manfrin, J. Gonzalez, and A. Ruiz Molecular Characterization and Chromosomal Distribution of Galileo, Kepler and Newton, Three Foldback Transposable Elements of the Drosophila buzzatii Species Complex Genetics, April 1, 2005; 169(4): 2047 - 2059. [Abstract] [Full Text] [PDF]
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 N. Mugnier, C. Biemont, and C. Vieira New Regulatory Regions of Drosophila 412 Retrotransposable Element Generated by Recombination Mol. Biol. Evol., March 1, 2005; 22(3): 747 - 757. [Abstract] [Full Text] [PDF]
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L. F. Franchini, E. W. Ganko, and J. F. McDonald Retrotransposon-Gene Associations Are Widespread Among D. melanogaster Populations Mol. Biol. Evol., July 1, 2004; 21(7): 1323 - 1331. [Abstract] [Full Text] [PDF]
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 J. Ma, K. M. Devos, and J. L. Bennetzen Analyses of LTR-Retrotransposon Structures Reveal Recent and Rapid Genomic DNA Loss in Rice Genome Res., May 1, 2004; 14(5): 860 - 869. [Abstract] [Full Text] [PDF]
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B. Gorinsek, F. Gubensek, and D. Kordis Evolutionary Genomics of Chromoviruses in Eukaryotes Mol. Biol. Evol., May 1, 2004; 21(5): 781 - 798. [Abstract] [Full Text] [PDF]
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R. J. Mroczek and R. K. Dawe Distribution of Retroelements in Centromeres and Neocentromeres of Maize Genetics, October 1, 2003; 165(2): 809 - 819. [Abstract] [Full Text] [PDF]
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E. Lerat, C. Rizzon, and C. Biemont Sequence Divergence Within Transposable Element Families in the Drosophila melanogaster Genome Genome Res., August 1, 2003; 13(8): 1889 - 1896. [Abstract] [Full Text] [PDF]
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V. V. Kapitonov and J. Jurka Molecular paleontology of transposable elements in the Drosophila melanogaster genome PNAS, May 27, 2003; 100(11): 6569 - 6574. [Abstract] [Full Text] [PDF]
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P. Dimitri, N. Junakovic, and B. Arca Colonization of Heterochromatic Genes by Transposable Elements in Drosophila Mol. Biol. Evol., April 1, 2003; 20(4): 503 - 512. [Abstract] [Full Text] [PDF]
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C. Vitte and O. Panaud Formation of Solo-LTRs Through Unequal Homologous Recombination Counterbalances Amplifications of LTR Retrotransposons in Rice Oryza sativa L. Mol. Biol. Evol., April 1, 2003; 20(4): 528 - 540. [Abstract] [Full Text] [PDF]
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L. Alonso-Gonzalez, A. Dominguez, and J. Albornoz Structural Heterogeneity and Genomic Distribution of Drosophila melanogaster LTR-Retrotransposons Mol. Biol. Evol., March 1, 2003; 20(3): 401 - 409. [Abstract] [Full Text] [PDF]
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 N. Jiang, I. K. Jordan, and S. R. Wessler Dasheng and RIRE2. A Nonautonomous Long Terminal Repeat Element and Its Putative Autonomous Partner in the Rice Genome Plant Physiology, December 1, 2002; 130(4): 1697 - 1705. [Abstract] [Full Text] [PDF]
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B. D. Peterson-Burch and D. F. Voytas Genes of the Pseudoviridae (Ty1/copia Retrotransposons) Mol. Biol. Evol., November 1, 2002; 19(11): 1832 - 1845. [Abstract] [Full Text] [PDF]
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N. Jiang, Z. Bao, S. Temnykh, Z. Cheng, J. Jiang, R. A. Wing, S. R. McCouch, and S. R. Wessler Dasheng: A Recently Amplified Nonautonomous Long Terminal Repeat Element That Is a Major Component of Pericentromeric Regions in Rice Genetics, July 1, 2002; 161(3): 1293 - 1305. [Abstract] [Full Text] [PDF]
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99% at the nucleotide level, indicating they may be the
products of recent transposition events. Consistent with the recent
transposition hypothesis, we found that 70% (125/178) of the elements
(across all families) have identical intra-element LTRs. Using the
synonymous substitution rate that has been calculated previously for
Drosophila (.016 substitutions per site per million years) and
the intra-element LTR divergence calculated here, the average age of
the remaining 30% (53/178) of the elements was found to be 137,000 ±89,000 yr. Collectively, these results indicate that many full-length
LTR retrotransposons present in the D. melanogaster genome
have transposed well after this species diverged from its closest
relative Drosophila simulans, 2.3 ± .3 million years ago.