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Vol. 11, Issue 8, 1441-1452, August 2001
RESOURCES
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  S. Jung, M. Staton, T. Lee, A. Blenda, R. Svancara, A. Abbott, and D. Main GDR (Genome Database for Rosaceae): integrated web-database for Rosaceae genomics and genetics data Nucleic Acids Res., January 11, 2008; 36(suppl_1): D1034 - D1040. [Abstract] [Full Text] [PDF]
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 C. Chen, Q. Yu, S. Hou, Y. Li, M. Eustice, R. L. Skelton, O. Veatch, R. E. Herdes, L. Diebold, J. Saw, et al. Construction of a Sequence-Tagged High-Density Genetic Map of Papaya for Comparative Structural and Evolutionary Genomics in Brassicales Genetics, December 1, 2007; 177(4): 2481 - 2491. [Abstract] [Full Text] [PDF]
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 R. Kofler, C. Schlotterer, and T. Lelley SciRoKo: a new tool for whole genome microsatellite search and investigation Bioinformatics, July 1, 2007; 23(13): 1683 - 1685. [Abstract] [Full Text] [PDF]
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S. B. Mudunuri and H. A. Nagarajaram IMEx: Imperfect Microsatellite Extractor Bioinformatics, May 15, 2007; 23(10): 1181 - 1187. [Abstract] [Full Text] [PDF]
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 Z. Zhang, Y. Deng, J. Tan, S. Hu, J. Yu, and Q. Xue A Genome-wide Microsatellite Polymorphism Database for the Indica and Japonica Rice DNA Res, April 23, 2007; (2007) dsm005v1. [Abstract] [Full Text] [PDF]
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 J. Bernier, A. Kumar, V. Ramaiah, D. Spaner, and G. Atlin A Large-Effect QTL for Grain Yield under Reproductive-Stage Drought Stress in Upland Rice Crop Sci., March 1, 2007; 47(2): 507 - 516. [Abstract] [Full Text] [PDF]
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P. Jayamani, S. Negrao, M. Martins, B. Macas, and M. M. Oliveira Genetic Relatedness of Portuguese Rice Accessions from Diverse Origins as Assessed by Microsatellite Markers Crop Sci., March 1, 2007; 47(2): 879 - 884. [Abstract] [Full Text] [PDF]
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P. Rajendrakumar, A. K. Biswal, S. M. Balachandran, K. Srinivasarao, and R. M. Sundaram Simple sequence repeats in organellar genomes of rice: frequency and distribution in genic and intergenic regions Bioinformatics, January 1, 2007; 23(1): 1 - 4. [Abstract] [Full Text] [PDF]
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H.-S. Ji, S.-H. Chu, W. Jiang, Y.-I. Cho, J.-H. Hahn, M.-Y. Eun, S. R. McCouch, and H.-J. Koh Characterization and Mapping of a Shattering Mutant in Rice That Corresponds to a Block of Domestication Genes Genetics, June 1, 2006; 173(2): 995 - 1005. [Abstract] [Full Text] [PDF]
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M. J. Thomson, J. D. Edwards, E. M. Septiningsih, S. E. Harrington, and S. R. McCouch Substitution Mapping of dth1.1, a Flowering-Time Quantitative Trait Locus (QTL) Associated With Transgressive Variation in Rice, Reveals Multiple Sub-QTL Genetics, April 1, 2006; 172(4): 2501 - 2514. [Abstract] [Full Text] [PDF]
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J.-H. Mun, D.-J. Kim, H.-K. Choi, J. Gish, F. Debelle, J. Mudge, R. Denny, G. Endre, O. Saurat, A.-M. Dudez, et al. Distribution of Microsatellites in the Genome of Medicago truncatula: A Resource of Genetic Markers That Integrate Genetic and Physical Maps Genetics, April 1, 2006; 172(4): 2541 - 2555. [Abstract] [Full Text] [PDF]
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B. Yue, W. Xue, L. Xiong, X. Yu, L. Luo, K. Cui, D. Jin, Y. Xing, and Q. Zhang Genetic Basis of Drought Resistance at Reproductive Stage in Rice: Separation of Drought Tolerance From Drought Avoidance Genetics, February 1, 2006; 172(2): 1213 - 1228. [Abstract] [Full Text] [PDF]
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R. Sunkar, T. Girke, and J.-K. Zhu Identification and characterization of endogenous small interfering RNAs from rice Nucleic Acids Res., August 2, 2005; 33(14): 4443 - 4454. [Abstract] [Full Text] [PDF]
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 K. Yogeeswaran, A. Frary, T. L. York, A. Amenta, A. H. Lesser, J. B. Nasrallah, S. D. Tanksley, and M. E. Nasrallah Comparative genome analyses of Arabidopsis spp.: Inferring chromosomal rearrangement events in the evolutionary history of A. thaliana Genome Res., April 1, 2005; 15(4): 505 - 515. [Abstract] [Full Text] [PDF]
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 S. R. Yant, X. Wu, Y. Huang, B. Garrison, S. M. Burgess, and M. A. Kay High-Resolution Genome-Wide Mapping of Transposon Integration in Mammals Mol. Cell. Biol., March 15, 2005; 25(6): 2085 - 2094. [Abstract] [Full Text] [PDF]
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M. Semon, R. Nielsen, M. P. Jones, and S. R. McCouch The Population Structure of African Cultivated Rice Oryza glaberrima (Steud.): Evidence for Elevated Levels of Linkage Disequilibrium Caused by Admixture with O. sativa and Ecological Adaptation Genetics, March 1, 2005; 169(3): 1639 - 1647. [Abstract] [Full Text] [PDF]
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A. J. Garris, T. H. Tai, J. Coburn, S. Kresovich, and S. McCouch Genetic Structure and Diversity in Oryza sativa L. Genetics, March 1, 2005; 169(3): 1631 - 1638. [Abstract] [Full Text] [PDF]
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M. D. Prasad, M. Muthulakshmi, M. Madhu, S. Archak, K. Mita, and J. Nagaraju Survey and Analysis of Microsatellites in the Silkworm, Bombyx mori: Frequency, Distribution, Mutations, Marker Potential and Their Conservation in Heterologous Species Genetics, January 1, 2005; 169(1): 197 - 214. [Abstract] [Full Text] [PDF]
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 Y.-J. Shen, H. Jiang, J.-P. Jin, Z.-B. Zhang, B. Xi, Y.-Y. He, G. Wang, C. Wang, L. Qian, X. Li, et al. Development of Genome-Wide DNA Polymorphism Database for Map-Based Cloning of Rice Genes Plant Physiology, July 1, 2004; 135(3): 1198 - 1205. [Abstract] [Full Text] [PDF]
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X.-Y. Gu, S. F. Kianian, and M. E. Foley Multiple Loci and Epistases Control Genetic Variation for Seed Dormancy in Weedy Rice (Oryza sativa) Genetics, March 1, 2004; 166(3): 1503 - 1516. [Abstract] [Full Text] [PDF]
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K. Xu, R. Deb, and D. J. Mackill A Microsatellite Marker and a Codominant PCR-Based Marker for Marker-Assisted Selection of Submergence Tolerance in Rice Crop Sci., January 1, 2004; 44(1): 248 - 253. [Abstract] [Full Text] [PDF]
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I. V. Yap, D. Schneider, J. Kleinberg, D. Matthews, S. Cartinhour, and S. R. McCouch A Graph-Theoretic Approach to Comparing and Integrating Genetic, Physical and Sequence-Based Maps Genetics, December 1, 2003; 165(4): 2235 - 2247. [Abstract] [Full Text] [PDF]
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 F. Y. Hu, D. Y. Tao, E. Sacks, B. Y. Fu, P. Xu, J. Li, Y. Yang, K. McNally, G. S. Khush, A. H. Paterson, et al. Convergent evolution of perenniality in rice and sorghum PNAS, April 1, 2003; 100(7): 4050 - 4054. [Abstract] [Full Text] [PDF]
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D. H. Ware, P. Jaiswal, J. Ni, I. V. Yap, X. Pan, K. Y. Clark, L. Teytelman, S. C. Schmidt, W. Zhao, K. Chang, et al. Gramene, a Tool for Grass Genomics Plant Physiology, December 1, 2002; 130(4): 1606 - 1613. [Abstract] [Full Text] [PDF]
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J. R. Coburn, S. V. Temnykh, E. M. Paul, and S. R. McCouch Design and Application of Microsatellite Marker Panels for Semiautomated Genotyping of Rice (Oryza sativa L.) Crop Sci., November 1, 2002; 42(6): 2092 - 2099. [Abstract] [Full Text] [PDF]
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N. Jiang, Z. Bao, S. Temnykh, Z. Cheng, J. Jiang, R. A. Wing, S. R. McCouch, and S. R. Wessler Dasheng: A Recently Amplified Nonautonomous Long Terminal Repeat Element That Is a Major Component of Pericentromeric Regions in Rice Genetics, July 1, 2002; 161(3): 1293 - 1305. [Abstract] [Full Text] [PDF]
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20 bp, and Class II, or potentially variable markers, consisted of SSRs