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Vol. 11, Issue 4, 547-554, April 2001
LETTER
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  M. J. A. van Hoek and P. Hogeweg The Role of Mutational Dynamics in Genome Shrinkage Mol. Biol. Evol., November 1, 2007; 24(11): 2485 - 2494. [Abstract] [Full Text] [PDF]
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 A. Vishnoi, R. Roy, and A. Bhattacharya Comparative analysis of bacterial genomes: identification of divergent regions in mycobacterial strains using an anchor-based approach Nucleic Acids Res., June 28, 2007; 35(11): 3654 - 3667. [Abstract] [Full Text] [PDF]
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 Y. Kong, M. D. Cave, L. Zhang, B. Foxman, C. F. Marrs, J. H. Bates, and Z. H. Yang Association between Mycobacterium tuberculosis Beijing/W Lineage Strain Infection and Extrathoracic Tuberculosis: Insights from Epidemiologic and Clinical Characterization of the Three Principal Genetic Groups of M. tuberculosis Clinical Isolates J. Clin. Microbiol., February 1, 2007; 45(2): 409 - 414. [Abstract] [Full Text] [PDF]
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D. Alland, D. W. Lacher, M. H. Hazbon, A. S. Motiwala, W. Qi, R. D. Fleischmann, and T. S. Whittam Role of Large Sequence Polymorphisms (LSPs) in Generating Genomic Diversity among Clinical Isolates of Mycobacterium tuberculosis and the Utility of LSPs in Phylogenetic Analysis J. Clin. Microbiol., January 1, 2007; 45(1): 39 - 46. [Abstract] [Full Text] [PDF]
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 H. Lindroos, O. Vinnere, A. Mira, D. Repsilber, K. Naslund, and S. G. E. Andersson Genome Rearrangements, Deletions, and Amplifications in the Natural Population of Bartonella henselae J. Bacteriol., November 1, 2006; 188(21): 7426 - 7439. [Abstract] [Full Text] [PDF]
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 B. Mathema, N. E. Kurepina, P. J. Bifani, and B. N. Kreiswirth Molecular Epidemiology of Tuberculosis: Current Insights Clin. Microbiol. Rev., October 1, 2006; 19(4): 658 - 685. [Abstract] [Full Text] [PDF]
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D. F. Warner and V. Mizrahi Tuberculosis Chemotherapy: the Influence of Bacillary Stress and Damage Response Pathways on Drug Efficacy Clin. Microbiol. Rev., July 1, 2006; 19(3): 558 - 570. [Abstract] [Full Text] [PDF]
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 S. Hervas-Stubbs, L. Majlessi, M. Simsova, J. Morova, M.-J. Rojas, C. Nouze, P. Brodin, P. Sebo, and C. Leclerc High Frequency of CD4+ T Cells Specific for the TB10.4 Protein Correlates with Protection against Mycobacterium tuberculosis Infection. Infect. Immun., June 1, 2006; 74(6): 3396 - 3407. [Abstract] [Full Text] [PDF]
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S. L. Howard, M. W. Gaunt, J. Hinds, A. A. Witney, R. Stabler, and B. W. Wren Application of Comparative Phylogenomics To Study the Evolution of Yersinia enterocolitica and To Identify Genetic Differences Relating to Pathogenicity. J. Bacteriol., May 1, 2006; 188(10): 3645 - 3653. [Abstract] [Full Text] [PDF]
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K. L. Horan, R. Freeman, K. Weigel, M. Semret, S. Pfaller, T. C. Covert, D. van Soolingen, S. C. Leao, M. A. Behr, and G. A. Cangelosi Isolation of the Genome Sequence Strain Mycobacterium avium 104 from Multiple Patients over a 17-Year Period. J. Clin. Microbiol., March 1, 2006; 44(3): 783 - 789. [Abstract] [Full Text] [PDF]
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Y. Hu, F. Movahedzadeh, N. G. Stoker, and A. R. M. Coates Deletion of the Mycobacterium tuberculosis {alpha}-Crystallin-Like hspX Gene Causes Increased Bacterial Growth In Vivo Infect. Immun., February 1, 2006; 74(2): 861 - 868. [Abstract] [Full Text] [PDF]
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 A. A. Vertes, M. Inui, and H. Yukawa Manipulating Corynebacteria, from Individual Genes to Chromosomes Appl. Envir. Microbiol., December 1, 2005; 71(12): 7633 - 7642. [Full Text] [PDF]
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K. R. Rao, F. Kauser, S. Srinivas, S. Zanetti, L. A. Sechi, N. Ahmed, and S. E. Hasnain Analysis of Genomic Downsizing on the Basis of Region-of-Difference Polymorphism Profiling of Mycobacterium tuberculosis Patient Isolates Reveals Geographic Partitioning J. Clin. Microbiol., December 1, 2005; 43(12): 5978 - 5982. [Abstract] [Full Text] [PDF]
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Y. Kong, M. D. Cave, D. Yang, L. Zhang, C. F. Marrs, B. Foxman, J. H. Bates, F. Wilson, L. N. Mukasa, and Z. H. Yang Distribution of Insertion- and Deletion-Associated Genetic Polymorphisms among Four Mycobacterium tuberculosis Phospholipase C Genes and Associations with Extrathoracic Tuberculosis: a Population-Based Study J. Clin. Microbiol., December 1, 2005; 43(12): 6048 - 6053. [Abstract] [Full Text] [PDF]
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A. A. Witney, G. L. Marsden, M. T. G. Holden, R. A. Stabler, S. E. Husain, J. K. Vass, P. D. Butcher, J. Hinds, and J. A. Lindsay Design, Validation, and Application of a Seven-Strain Staphylococcus aureus PCR Product Microarray for Comparative Genomics Appl. Envir. Microbiol., November 1, 2005; 71(11): 7504 - 7514. [Abstract] [Full Text] [PDF]
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R. Freeman, M. Kato-Maeda, K. A. Hauge, K. L. Horan, E. Oren, M. Narita, C. K. Wallis, D. Cave, C. M. Nolan, P. M. Small, et al. Use of Rapid Genomic Deletion Typing To Monitor a Tuberculosis Outbreak within an Urban Homeless Population J. Clin. Microbiol., November 1, 2005; 43(11): 5550 - 5554. [Abstract] [Full Text] [PDF]
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K. Kremer, C. Arnold, A. Cataldi, M. C. Gutierrez, W. H. Haas, S. Panaiotov, R. A. Skuce, P. Supply, A. G. M. van der Zanden, and D. van Soolingen Discriminatory Power and Reproducibility of Novel DNA Typing Methods for Mycobacterium tuberculosis Complex Strains J. Clin. Microbiol., November 1, 2005; 43(11): 5628 - 5638. [Abstract] [Full Text] [PDF]
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H. Yesilkaya, J. W. Dale, N. J. C. Strachan, and K. J. Forbes Natural Transposon Mutagenesis of Clinical Isolates of Mycobacterium tuberculosis: How Many Genes Does a Pathogen Need? J. Bacteriol., October 1, 2005; 187(19): 6726 - 6732. [Abstract] [Full Text] [PDF]
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S. Mostowy, J. Inwald, S. Gordon, C. Martin, R. Warren, K. Kremer, D. Cousins, and M. A. Behr Revisiting the Evolution of Mycobacterium bovis J. Bacteriol., September 15, 2005; 187(18): 6386 - 6395. [Abstract] [Full Text] [PDF]
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 J. W Dale, G. H Bothamley, F. Drobniewski, S. H Gillespie, T. D McHugh, and R. Pitman Origins and properties of Mycobacterium tuberculosis isolates in London J. Med. Microbiol., June 1, 2005; 54(6): 575 - 582. [Abstract] [Full Text] [PDF]
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 P. H. Shah, R. C. MacFarlane, D. Bhattacharya, J. C. Matese, J. Demeter, S. E. Stroup, and U. Singh Comparative Genomic Hybridizations of Entamoeba Strains Reveal Unique Genetic Fingerprints That Correlate with Virulence Eukaryot. Cell, March 1, 2005; 4(3): 504 - 515. [Abstract] [Full Text] [PDF]
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 T. R. Gingeras, R. Higuchi, L. J. Kricka, Y.M. D. Lo, and C. T. Wittwer Fifty Years of Molecular (DNA/RNA) Diagnostics Clin. Chem., March 1, 2005; 51(3): 661 - 671. [Full Text] [PDF]
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 Q. Gao, K. E. Kripke, A. J. Saldanha, W. Yan, S. Holmes, and P. M. Small Gene expression diversity among Mycobacterium tuberculosis clinical isolates Microbiology, January 1, 2005; 151(1): 5 - 14. [Abstract] [Full Text] [PDF]
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M. Semret, G. Zhai, S. Mostowy, C. Cleto, D. Alexander, G. Cangelosi, D. Cousins, D. M. Collins, D. van Soolingen, and M. A. Behr Extensive Genomic Polymorphism within Mycobacterium avium J. Bacteriol., September 15, 2004; 186(18): 6332 - 6334. [Abstract] [Full Text] [PDF]
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S. Mostowy, A. Onipede, S. Gagneux, S. Niemann, K. Kremer, E. P. Desmond, M. Kato-Maeda, and M. Behr Genomic Analysis Distinguishes Mycobacterium africanum J. Clin. Microbiol., August 1, 2004; 42(8): 3594 - 3599. [Abstract] [Full Text] [PDF]
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Y.-O. L. Goguet de la Salmoniere, C. C. Kim, A. G. Tsolaki, A. S. Pym, M. S. Siegrist, and P. M. Small High-Throughput Method for Detecting Genomic-Deletion Polymorphisms J. Clin. Microbiol., July 1, 2004; 42(7): 2913 - 2918. [Abstract] [Full Text] [PDF]
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N. Ahmed, M. Alam, K. R. Rao, F. Kauser, N. A. Kumar, N. N. Qazi, V. Sangal, V. D. Sharma, R. Das, V. M. Katoch, et al. Molecular Genotyping of a Large, Multicentric Collection of Tubercle Bacilli Indicates Geographical Partitioning of Strain Variation and Has Implications for Global Epidemiology of Mycobacterium tuberculosis J. Clin. Microbiol., July 1, 2004; 42(7): 3240 - 3247. [Abstract] [Full Text] [PDF]
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D. Nguyen, P. Brassard, D. Menzies, L. Thibert, R. Warren, S. Mostowy, and M. Behr Genomic Characterization of an Endemic Mycobacterium tuberculosis Strain: Evolutionary and Epidemiologic Implications J. Clin. Microbiol., June 1, 2004; 42(6): 2573 - 2580. [Abstract] [Full Text] [PDF]
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S. Prabhakar, A. Mishra, A. Singhal, V. M. Katoch, S. S. Thakral, J. S. Tyagi, and H. K. Prasad Use of the hupB Gene Encoding a Histone-Like Protein of Mycobacterium tuberculosis as a Target for Detection and Differentiation of M. tuberculosis and M. bovis J. Clin. Microbiol., June 1, 2004; 42(6): 2724 - 2732. [Abstract] [Full Text] [PDF]
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K. Rajakumar, J. Shafi, R. J. Smith, R. A. Stabler, P. W. Andrew, D. Modha, G. Bryant, P. Monk, J. Hinds, P. D. Butcher, et al. Use of Genome Level-Informed PCR as a New Investigational Approach for Analysis of Outbreak-Associated Mycobacterium tuberculosis Isolates J. Clin. Microbiol., May 1, 2004; 42(5): 1890 - 1896. [Abstract] [Full Text] [PDF]
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C. C. Frota, D. M. Hunt, R. S. Buxton, L. Rickman, J. Hinds, K. Kremer, D. van Soolingen, and M. J. Colston Genome structure in the vole bacillus, Mycobacterium microti, a member of the Mycobacterium tuberculosis complex with a low virulence for humans Microbiology, May 1, 2004; 150(5): 1519 - 1527. [Abstract] [Full Text] [PDF]
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L. M. Okkels and P. Andersen Protein-Protein Interactions of Proteins from the ESAT-6 Family of Mycobacterium tuberculosis J. Bacteriol., April 15, 2004; 186(8): 2487 - 2491. [Abstract] [Full Text] [PDF]
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 A. G. Tsolaki, A. E. Hirsh, K. DeRiemer, J. A. Enciso, M. Z. Wong, M. Hannan, Y.-O. L. G. de la Salmoniere, K. Aman, M. Kato-Maeda, and P. M. Small From the Cover: Functional and evolutionary genomics of Mycobacterium tuberculosis: Insights from genomic deletions in 100 strains PNAS, April 6, 2004; 101(14): 4865 - 4870. [Abstract] [Full Text] [PDF]
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A. E. Hirsh, A. G. Tsolaki, K. DeRiemer, M. W. Feldman, and P. M. Small From the Cover: Stable association between strains of Mycobacterium tuberculosis and their human host populations PNAS, April 6, 2004; 101(14): 4871 - 4876. [Abstract] [Full Text] [PDF]
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M. Marmiesse, P. Brodin, C. Buchrieser, C. Gutierrez, N. Simoes, V. Vincent, P. Glaser, S. T. Cole, and R. Brosch Macro-array and bioinformatic analyses reveal mycobacterial 'core' genes, variation in the ESAT-6 gene family and new phylogenetic markers for the Mycobacterium tuberculosis complex Microbiology, February 1, 2004; 150(2): 483 - 496. [Abstract] [Full Text] [PDF]
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S. Mostowy, D. Cousins, and M. A. Behr Genomic Interrogation of the Dassie Bacillus Reveals It as a Unique RD1 Mutant within the Mycobacterium tuberculosis Complex J. Bacteriol., January 1, 2004; 186(1): 104 - 109. [Abstract] [Full Text] [PDF]
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G. A. Jenkin, T. P. Stinear, P. D. R. Johnson, and J. K. Davies Subtractive Hybridization Reveals a Type I Polyketide Synthase Locus Specific to Mycobacterium ulcerans J. Bacteriol., December 1, 2003; 185(23): 6870 - 6882. [Abstract] [Full Text] [PDF]
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Y. C. Manabe, A. M. Dannenberg Jr., S. K. Tyagi, C. L. Hatem, M. Yoder, S. C. Woolwine, B. C. Zook, M. L. M. Pitt, and W. R. Bishai Different Strains of Mycobacterium tuberculosis Cause Various Spectrums of Disease in the Rabbit Model of Tuberculosis Infect. Immun., October 1, 2003; 71(10): 6004 - 6011. [Abstract] [Full Text] [PDF]
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 S. J. Hinchliffe, K. E. Isherwood, R. A. Stabler, M. B. Prentice, A. Rakin, R. A. Nichols, P. C.F. Oyston, J. Hinds, R. W. Titball, and B. W. Wren Application of DNA Microarrays to Study the Evolutionary Genomics of Yersinia pestis and Yersinia pseudotuberculosis Genome Res., September 1, 2003; 13(9): 2018 - 2029. [Abstract] [Full Text] [PDF]
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M. C. Wolfgang, B. R. Kulasekara, X. Liang, D. Boyd, K. Wu, Q. Yang, C. G. Miyada, and S. Lory Conservation of genome content and virulence determinants among clinical and environmental isolates of Pseudomonas aeruginosa PNAS, July 8, 2003; 100(14): 8484 - 8489. [Abstract] [Full Text] [PDF]
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M. Broekhuijsen, P. Larsson, A. Johansson, M. Bystrom, U. Eriksson, E. Larsson, R. G. Prior, A. Sjostedt, R. W. Titball, and M. Forsman Genome-Wide DNA Microarray Analysis of Francisella tularensis Strains Demonstrates Extensive Genetic Conservation within the Species but Identifies Regions That Are Unique to the Highly Virulent F. tularensis subsp. tularensis J. Clin. Microbiol., July 1, 2003; 41(7): 2924 - 2931. [Abstract] [Full Text] [PDF]
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S. L. Sampson, R. M. Warren, M. Richardson, T. C. Victor, A. M. Jordaan, G. D. van der Spuy, and P. D. van Helden IS6110-Mediated Deletion Polymorphism in the Direct Repeat Region of Clinical Isolates of Mycobacterium tuberculosis J. Bacteriol., May 1, 2003; 185(9): 2856 - 2866. [Abstract] [Full Text] [PDF]
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J. W. Dale, H. Al-Ghusein, S. Al-Hashmi, P. Butcher, A. L. Dickens, F. Drobniewski, K. J. Forbes, S. H. Gillespie, D. Lamprecht, T. D. McHugh, et al. Evolutionary Relationships among Strains of Mycobacterium tuberculosis with Few Copies of IS6110 J. Bacteriol., April 15, 2003; 185(8): 2555 - 2562. [Abstract] [Full Text] [PDF]
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N. Ahmed, L. Caviedes, M. Alam, K. R. Rao, V. Sangal, P. Sheen, R. H. Gilman, and S. E. Hasnain Distinctiveness of Mycobacterium tuberculosis Genotypes from Human Immunodeficiency Virus Type 1-Seropositive and -Seronegative Patients in Lima, Peru J. Clin. Microbiol., April 1, 2003; 41(4): 1712 - 1716. [Abstract] [Full Text] [PDF]
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T. Parish, D. A. Smith, S. Kendall, N. Casali, G. J. Bancroft, and N. G. Stoker Deletion of Two-Component Regulatory Systems Increases the Virulence of Mycobacterium tuberculosis Infect. Immun., March 1, 2003; 71(3): 1134 - 1140. [Abstract] [Full Text] [PDF]
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J. O. Borevitz, D. Liang, D. Plouffe, H.-S. Chang, T. Zhu, D. Weigel, C. C. Berry, E. Winzeler, and J. Chory Large-Scale Identification of Single-Feature Polymorphisms in Complex Genomes Genome Res., March 1, 2003; 13(3): 513 - 523. [Abstract] [Full Text] [PDF]
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O. G. Berg and C. G. Kurland Evolution of Microbial Genomes: Sequence Acquisition and Loss Mol. Biol. Evol., December 1, 2002; 19(12): 2265 - 2276. [Abstract] [Full Text] [PDF]
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P. Brodin, K. Eiglmeier, M. Marmiesse, A. Billault, T. Garnier, S. Niemann, S. T. Cole, and R. Brosch Bacterial Artificial Chromosome-Based Comparative Genomic Analysis Identifies Mycobacterium microti as a Natural ESAT-6 Deletion Mutant Infect. Immun., October 1, 2002; 70(10): 5568 - 5578. [Abstract] [Full Text] [PDF]
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R. D. Fleischmann, D. Alland, J. A. Eisen, L. Carpenter, O. White, J. Peterson, R. DeBoy, R. Dodson, M. Gwinn, D. Haft, et al. Whole-Genome Comparison of Mycobacterium tuberculosis Clinical and Laboratory Strains J. Bacteriol., October 1, 2002; 184(19): 5479 - 5490. [Abstract] [Full Text] [PDF]
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S. T. Cole Comparative and functional genomics of the Mycobacterium tuberculosis complex Microbiology, October 1, 2002; 148(10): 2919 - 2928. [Full Text] [PDF]
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R. A. McAdam, S. Quan, D. A. Smith, S. Bardarov, J. C. Betts, F. C. Cook, E. U. Hooker, A. P. Lewis, P. Woollard, M. J. Everett, et al. Characterization of a Mycobacterium tuberculosis H37Rv transposon library reveals insertions in 351 ORFs and mutants with altered virulence Microbiology, October 1, 2002; 148(10): 2975 - 2986. [Abstract] [Full Text] [PDF]
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C. L. Nesbo, K. E. Nelson, and W. F. Doolittle Suppressive Subtractive Hybridization Detects Extensive Genomic Diversity in Thermotoga maritima J. Bacteriol., August 15, 2002; 184(16): 4475 - 4488. [Abstract] [Full Text] [PDF]
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 M.V. Burgos and A.S. Pym Molecular epidemiology of tuberculosis Eur. Respir. J., July 1, 2002; 20(36_suppl): 54S - 65s. [Abstract] [Full Text] [PDF]
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S.T. Cole Comparative mycobacterial genomics as a tool for drug target and antigen discovery Eur. Respir. J., July 1, 2002; 20(36_suppl): 78S - 86s. [Abstract] [Full Text] [PDF]
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M. Kivi, X. Liu, S. Raychaudhuri, R. B. Altman, and P. M. Small Determining the Genomic Locations of Repetitive DNA Sequences with a Whole-Genome Microarray: IS6110 in Mycobacterium tuberculosis J. Clin. Microbiol., June 1, 2002; 40(6): 2192 - 2198. [Abstract] [Full Text] [PDF]
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J. P. Bannantine, E. Baechler, Q. Zhang, L. Li, and V. Kapur Genome Scale Comparison of Mycobacterium avium subsp. paratuberculosis with Mycobacterium avium subsp. avium Reveals Potential Diagnostic Sequences J. Clin. Microbiol., April 1, 2002; 40(4): 1303 - 1310. [Abstract] [Full Text] [PDF]
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