Genome Research

Home Help [Feedback] [For Subscribers] [Archive] [Search] [Contents]
QUICK SEARCH:   [advanced]


     

Published online before print November 12, 2001, 10.1101/gr.210601
This Article
Right arrow Full Text
Right arrow Full Text (PDF)
Right arrow All Versions of this Article:
GR-2106Rv1
11/12/2127    most recent
Right arrow Alert me when this article is cited
Right arrow Alert me if a correction is posted
Right arrow Citation Map
Services
Right arrow Email this article to a friend
Right arrow Similar articles in this journal
Right arrow Similar articles in PubMed
Right arrow Alert me to new issues of the journal
Right arrow Download to citation manager
Right arrow reprints & permissions
Citing Articles
Right arrow Citing Articles via HighWire
Right arrow Citing Articles via Google Scholar
Google Scholar
Right arrow Articles by Hukriede, N.
Right arrow Articles by Ekker, M.
Right arrow Search for Related Content
PubMed
Right arrow PubMed Citation
Right arrow Articles by Hukriede, N.
Right arrow Articles by Ekker, M.
Social Bookmarking
Add to CiteULike   Add to Connotea   Add to Del.icio.us   Add to Digg   Add to Reddit   Add to Technorati  
What's this?

Vol. 11, Issue 12, 2127-2132, December 2001

RESOURCES
The LN54 Radiation Hybrid Map of Zebrafish Expressed Sequences

Neil Hukriede,1,7 Dan Fisher,2,7 Jonathan Epstein,1,7 Lucille Joly,3 Patricia Tellis,4 Yi Zhou,5 Brad Barbazuk,2 Kristine Cox,2 Laura Fenton-Noriega,5 Candace Hersey,5 Jennifer Miles,3 Xiaoming Sheng,5 Anhua Song,5 Rick Waterman,2 Stephen L. Johnson,2 Igor B. Dawid,1 Mario Chevrette,4 Leonard I. Zon,5 John McPherson,2 and Marc Ekker3,6,8

1 Laboratory of Molecular Genetics and Unit of Biological Computation, National Institute of Child Health and Human Development, National Institutes of Health, Bethesda, Maryland 20892, USA; 2 Department of Genetics, Washington University Medical School, St. Louis, Missouri 63110, USA; 3 Ottawa Hospital Research Institute, the Ottawa Hospital, Ottawa K1Y 4E9, Canada; 4 Montreal General Hospital Research Institute and Department of Surgery, McGill University, Montreal H3G 1A4, Canada; 5 Howard Hughes Medical Institute and Department of Hematology, Childrens' Hospital, Boston, Massachusetts 02115, USA; and 6 Departments of Medicine and of Cellular and Molecular Medicine, University of Ottawa, Ottawa K1Y 4E9, Canada

To increase the density of a gene map of the zebrafish, Danio rerio, we have placed 3119 expressed sequence tags (ESTs) and cDNA sequences on the LN54 radiation hybrid (RH) panel. The ESTs and genes mapped here join 748 SSLp markers and 459 previously mapped genes and ESTs, bringing the total number of markers on the LN54 RH panel to 4226. Addition of these new markers brings the total LN54 map size to 14,372 cR, with 118 kb/cR. The distribution of ESTs according to linkage groups shows relatively little variation (minimum, 73; maximum, 201). This observation, combined with a relatively uniform size for zebrafish chromosomes, as previously indicated by karyotyping, indicates that there are no especially gene-rich or gene-poor chromosomes in this species. We developed an algorithm to provide a semiautomatic method for the selection of additional framework markers for the LN54 map. This algorithm increased the total number of framework markers to 1150 and permitted the mapping of a high percentage of sequences that could not be placed on a previous version of the LN54 map. The increased concentration of expressed sequences on the LN54 map of the zebrafish genome will facilitate the molecular characterization of mutations in this species.

7 These authors contributed equally to this work.

8 Corresponding author.

11:2127-2132 ©2001 by Cold Spring Harbor Laboratory Press  ISSN 1088-9051/01 $5.00
Add to CiteULike CiteULike   Add to Connotea Connotea   Add to Del.icio.us Del.icio.us   Add to Digg Digg   Add to Reddit Reddit   Add to Technorati Technorati    What's this?


This article has been cited by other articles:


Home page
 J. Biol. Chem.Home page
L. Li, M. Kobayashi, H. Kaneko, Y. Nakajima-Takagi, Y. Nakayama, and M. Yamamoto
Molecular Evolution of Keap1: TWO Keap1 MOLECULES WITH DISTINCTIVE INTERVENING REGION STRUCTURES ARE CONSERVED AMONG FISH
J. Biol. Chem., February 8, 2008; 283(6): 3248 - 3255.
[Abstract] [Full Text] [PDF]

Home page
 Biol. Reprod.Home page
M. S. Hossain, A. Larsson, N. Scherbak, P.-E. Olsson, and L. Orban
Zebrafish Androgen Receptor: Isolation, Molecular, and Biochemical Characterization
Biol Reprod, February 1, 2008; 78(2): 361 - 369.
[Abstract] [Full Text] [PDF]

Home page
 Proc. Natl. Acad. Sci. USAHome page
H. Tostivint, L. Joly, I. Lihrmann, C. Parmentier, A. Lebon, M. Morisson, A. Calas, M. Ekker, and H. Vaudry
Comparative genomics provides evidence for close evolutionary relationships between the urotensin II and somatostatin gene families
PNAS, February 14, 2006; 103(7): 2237 - 2242.
[Abstract] [Full Text] [PDF]

Home page
 Genome Res.Home page
H. Roest Crollius and J. Weissenbach
Fish genomics and biology
Genome Res., December 1, 2005; 15(12): 1675 - 1682.
[Abstract] [Full Text] [PDF]

Home page
 Proc. Natl. Acad. Sci. USAHome page
P. Pfister and I. Rodriguez
Olfactory expression of a single and highly variable V1r pheromone receptor-like gene in fish species
PNAS, April 12, 2005; 102(15): 5489 - 5494.
[Abstract] [Full Text] [PDF]

Home page
 J Mol EndocrinolHome page
H. Tostivint, L. Joly, I. Lihrmann, M. Ekker, and H. Vaudry
Chromosomal localization of three somatostatin genes in zebrafish. Evidence that the [Pro2]-somatostatin-14 isoform and cortistatin are encoded by orthologous genes
J. Mol. Endocrinol., December 1, 2004; 33(3): R1 - R8.
[Abstract] [Full Text] [PDF]

Home page
 Am. J. Physiol. Heart Circ. Physiol.Home page
T. L. Christie, R. Mui, T. W. White, and G. Valdimarsson
Molecular cloning, functional analysis, and RNA expression analysis of connexin45.6: a zebrafish cardiovascular connexin
Am J Physiol Heart Circ Physiol, May 1, 2004; 286(5): H1623 - H1632.
[Abstract] [Full Text] [PDF]

Home page
 Proc. Natl. Acad. Sci. USAHome page
M. R. Taylor, J. B. Hurley, H. A. Van Epps, and S. E. Brockerhoff
A zebrafish model for pyruvate dehydrogenase deficiency: Rescue of neurological dysfunction and embryonic lethality using a ketogenic diet
PNAS, March 30, 2004; 101(13): 4584 - 4589.
[Abstract] [Full Text] [PDF]

Home page
 DevelopmentHome page
E. Berdougo, H. Coleman, D. H. Lee, D. Y. R. Stainier, and D. Yelon
Mutation of weak atrium/atrial myosin heavy chain disrupts atrial function and influences ventricular morphogenesis in zebrafish
Development, December 15, 2003; 130(24): 6121 - 6129.
[Abstract] [Full Text] [PDF]

Home page
 Genome Res.Home page
C. Winkler, M. Schafer, J. Duschl, M. Schartl, and J.-N. Volff
Functional Divergence of Two Zebrafish Midkine Growth Factors Following Fish-Specific Gene Duplication
Genome Res., June 1, 2003; 13(6): 1067 - 1081.
[Abstract] [Full Text] [PDF]

Home page
 DevelopmentHome page
K. D. Poss, A. Nechiporuk, A. M. Hillam, S. L. Johnson, and M. T. Keating
Mps1 defines a proximal blastemal proliferative compartment essential for zebrafish fin regeneration
Development, March 13, 2003; 129(22): 5141 - 5149.
[Abstract] [Full Text] [PDF]

Home page
 DevelopmentHome page
K. S. Solomon, T. Kudoh, I. B. Dawid, and A. Fritz
Zebrafish foxi1 mediates otic placode formation and jaw development
Development, March 1, 2003; 130(5): 929 - 940.
[Abstract] [Full Text] [PDF]

Home page
 GeneticsHome page
J. F. Rawls, M. R. Frieda, A. R. McAdow, J. P. Gross, C. M. Clayton, C. K. Heyen, and S. L. Johnson
Coupled Mutagenesis Screens and Genetic Mapping in Zebrafish
Genetics, March 1, 2003; 163(3): 997 - 1009.
[Abstract] [Full Text] [PDF]

Home page
 Genome Res.Home page
H. L. Stickney, J. Schmutz, I. G. Woods, C. C. Holtzer, M. C. Dickson, P. D. Kelly, R. M. Myers, and W. S. Talbot
Rapid Mapping of Zebrafish Mutations With SNPs and Oligonucleotide Microarrays
Genome Res., December 1, 2002; 12(12): 1929 - 1934.
[Abstract] [Full Text] [PDF]

Home page
 ScienceHome page
E. Wienholds, S. Schulte-Merker, B. Walderich, and R. H. A. Plasterk
Target-Selected Inactivation of the Zebrafish rag1 Gene
Science, July 5, 2002; 297(5578): 99 - 102.
[Abstract] [Full Text] [PDF]

Home page
 DevelopmentHome page
M. Poulain and T. Lepage
Mezzo, a paired-like homeobox protein is an immediate target of Nodal signalling and regulates endoderm specification in zebrafish
Development, January 11, 2002; 129(21): 4901 - 4914.
[Abstract] [Full Text] [PDF]

Home page
 Genome Res.Home page
T. Kudoh, M. Tsang, N. A. Hukriede, X. Chen, M. Dedekian, C. J. Clarke, A. Kiang, S. Schultz, J. A. Epstein, R. Toyama, et al.
A Gene Expression Screen in Zebrafish Embryogenesis
Genome Res., December 1, 2001; 11(12): 1979 - 1987.
[Abstract] [Full Text] [PDF]


Home Help [Feedback] [For Subscribers] [Archive] [Search] [Contents]
Genes Dev. Learn. Mem.
Protein Science RNA Genome Res.