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Published online before print
September 20, 2001, 10.1101/gr.188201
Vol. 11, Issue 10, 1660-1676, October 2001
LETTER
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  M. Tomita, K. Shinohara, and M. Morimoto Revolver is a New Class of Transposon-like Gene Composing the Triticeae Genome DNA Res, February 1, 2008; 15(1): 49 - 62. [Abstract] [Full Text] [PDF]
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 P. Smarda, P. Bures, L. Horova, B. Foggi, and G. Rossi Genome Size and GC Content Evolution of Festuca: Ancestral Expansion and Subsequent Reduction Ann. Bot., February 1, 2008; 101(3): 421 - 433. [Abstract] [Full Text] [PDF]
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 B. A. Kronmiller and R. P. Wise TEnest: Automated Chronological Annotation and Visualization of Nested Plant Transposable Elements Plant Physiology, January 1, 2008; 146(1): 45 - 59. [Abstract] [Full Text] [PDF]
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 F. I. E. Amarillo and H. W. Bass A Transgenomic Cytogenetic Sorghum (Sorghum propinquum) Bacterial Artificial Chromosome Fluorescence in Situ Hybridization Map of Maize (Zea mays L.) Pachytene Chromosome 9, Evidence for Regions of Genome Hyperexpansion Genetics, November 1, 2007; 177(3): 1509 - 1526. [Abstract] [Full Text] [PDF]
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 Z. Xu and H. Wang LTR_FINDER: an efficient tool for the prediction of full-length LTR retrotransposons Nucleic Acids Res., July 13, 2007; 35(suppl_2): W265 - W268. [Abstract] [Full Text] [PDF]
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 R. Liu, C. Vitte, J. Ma, A. A. Mahama, T. Dhliwayo, M. Lee, and J. L. Bennetzen A GeneTrek analysis of the maize genome PNAS, July 10, 2007; 104(28): 11844 - 11849. [Abstract] [Full Text] [PDF]
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H. Ner-Gaon, N. Leviatan, E. Rubin, and R. Fluhr Comparative Cross-Species Alternative Splicing in Plants Plant Physiology, July 1, 2007; 144(3): 1632 - 1641. [Abstract] [Full Text] [PDF]
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P. Neumann, H. Yan, and J. Jiang The Centromeric Retrotransposons of Rice Are Transcribed and Differentially Processed by RNA Interference Genetics, June 1, 2007; 176(2): 749 - 761. [Abstract] [Full Text] [PDF]
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D. Holligan, X. Zhang, N. Jiang, E. J. Pritham, and S. R. Wessler The Transposable Element Landscape of the Model Legume Lotus japonicus Genetics, December 1, 2006; 174(4): 2215 - 2228. [Abstract] [Full Text] [PDF]
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C. Vitte and J. L. Bennetzen Eukaryotic Transposable Elements and Genome Evolution Special Feature: Analysis of retrotransposon structural diversity uncovers properties and propensities in angiosperm genome evolution PNAS, November 21, 2006; 103(47): 17638 - 17643. [Abstract] [Full Text] [PDF]
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 S. Moon, K.-H. Jung, D.-e. Lee, W.-Z. Jiang, H. J. Koh, M.-H. Heu, D. S. Lee, H. S. Suh, and G. An Identification of Active Transposon dTok, a Member of the hAT Family, in Rice Plant Cell Physiol., November 1, 2006; 47(11): 1473 - 1483. [Abstract] [Full Text] [PDF]
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 R. Bruggmann, A. K. Bharti, H. Gundlach, J. Lai, S. Young, A. C. Pontaroli, F. Wei, G. Haberer, G. Fuks, C. Du, et al. Uneven chromosome contraction and expansion in the maize genome Genome Res., October 1, 2006; 16(10): 1241 - 1251. [Abstract] [Full Text] [PDF]
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J. S. Hawkins, H. Kim, J. D. Nason, R. A. Wing, and J. F. Wendel Differential lineage-specific amplification of transposable elements is responsible for genome size variation in Gossypium Genome Res., October 1, 2006; 16(10): 1252 - 1261. [Abstract] [Full Text] [PDF]
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J. C. Lamb and J. A. Birchler Retroelement Genome Painting: Cytological Visualization of Retroelement Expansions in the Genera Zea and Tripsacum Genetics, June 1, 2006; 173(2): 1007 - 1021. [Abstract] [Full Text] [PDF]
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P. Neumann, A. Koblizkova, A. Navratilova, and J. Macas Significant Expansion of Vicia pannonica Genome Size Mediated by Amplification of a Single Type of Giant Retroelement Genetics, June 1, 2006; 173(2): 1047 - 1056. [Abstract] [Full Text] [PDF]
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L. K. Anderson, A. Lai, S. M. Stack, C. Rizzon, and B. S. Gaut Uneven distribution of expressed sequence tag loci on maize pachytene chromosomes Genome Res., January 1, 2006; 16(1): 115 - 122. [Abstract] [Full Text] [PDF]
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 I. Vroh Bi, M. D. McMullen, H. Sanchez-Villeda, S. Schroeder, J. Gardiner, M. Polacco, C. Soderlund, R. Wing, Z. Fang, and E. H. Coe Jr. Single Nucleotide Polymorphisms and Insertion-Deletions for Genetic Markers and Anchoring the Maize Fingerprint Contig Physical Map Crop Sci., December 2, 2005; 46(1): 12 - 21. [Abstract] [Full Text] [PDF]
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G. Haberer, S. Young, A. K. Bharti, H. Gundlach, C. Raymond, G. Fuks, E. Butler, R. A. Wing, S. Rounsley, B. Birren, et al. Structure and Architecture of the Maize Genome Plant Physiology, December 1, 2005; 139(4): 1612 - 1624. [Abstract] [Full Text] [PDF]
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J. Emberton, J. Ma, Y. Yuan, P. SanMiguel, and J. L. Bennetzen Gene enrichment in maize with hypomethylated partial restriction (HMPR) libraries Genome Res., October 1, 2005; 15(10): 1441 - 1446. [Abstract] [Full Text] [PDF]
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W. M. Nelson, A. K. Bharti, E. Butler, F. Wei, G. Fuks, H. Kim, R. A. Wing, J. Messing, and C. Soderlund Whole-Genome Validation of High-Information-Content Fingerprinting Plant Physiology, September 1, 2005; 139(1): 27 - 38. [Abstract] [Full Text] [PDF]
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Y. Fu, S. J. Emrich, L. Guo, T.-J. Wen, D. A. Ashlock, S. Aluru, and P. S. Schnable Quality assessment of maize assembled genomic islands (MAGIs) and large-scale experimental verification of predicted genes PNAS, August 23, 2005; 102(34): 12282 - 12287. [Abstract] [Full Text] [PDF]
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C. B. Della Vedova, R. Lorbiecke, H. Kirsch, M. B. Schulte, K. Scheets, L. M. Borchert, B. E. Scheffler, U. Wienand, K. C. Cone, and J. A. Birchler The Dominant Inhibitory Chalcone Synthase Allele C2-Idf (Inhibitor diffuse) From Zea mays (L.) Acts via an Endogenous RNA Silencing Mechanism Genetics, August 1, 2005; 170(4): 1989 - 2002. [Abstract] [Full Text] [PDF]
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J. Lai, Y. Li, J. Messing, and H. K. Dooner From the Cover: Gene movement by Helitron transposons contributes to the haplotype variability of maize PNAS, June 21, 2005; 102(25): 9068 - 9073. [Abstract] [Full Text] [PDF]
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 S. Brunner, K. Fengler, M. Morgante, S. Tingey, and A. Rafalski Evolution of DNA Sequence Nonhomologies among Maize Inbreds PLANT CELL, February 1, 2005; 17(2): 343 - 360. [Abstract] [Full Text] [PDF]
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Z. Swigonova, J. L. Bennetzen, and J. Messing Structure and Evolution of the r/b Chromosomal Regions in Rice, Maize and Sorghum Genetics, February 1, 2005; 169(2): 891 - 906. [Abstract] [Full Text] [PDF]
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B. S. Gill, R. Appels, A.-M. Botha-Oberholster, C. R. Buell, J. L. Bennetzen, B. Chalhoub, F. Chumley, J. Dvorak, M. Iwanaga, B. Keller, et al. A Workshop Report on Wheat Genome Sequencing: International Genome Research on Wheat Consortium Genetics, October 1, 2004; 168(2): 1087 - 1096. [Abstract] [Full Text] [PDF]
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N. M. Springer, X. Xu, and W. B. Barbazuk Utility of Different Gene Enrichment Approaches Toward Identifying and Sequencing the Maize Gene Space Plant Physiology, October 1, 2004; 136(2): 3023 - 3033. [Abstract] [Full Text] [PDF]
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A. Kato, J. C. Lamb, and J. A. Birchler From the Cover: Chromosome painting using repetitive DNA sequences as probes for somatic chromosome identification in maize PNAS, September 14, 2004; 101(37): 13554 - 13559. [Abstract] [Full Text] [PDF]
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B. C. Meyers, S. S. Tej, T. H. Vu, C. D. Haudenschild, V. Agrawal, S. B. Edberg, H. Ghazal, and S. Decola The Use of MPSS for Whole-Genome Transcriptional Analysis in Arabidopsis Genome Res., August 1, 2004; 14(8): 1641 - 1653. [Abstract] [Full Text] [PDF]
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K. Palaisa, M. Morgante, S. Tingey, and A. Rafalski Long-range patterns of diversity and linkage disequilibrium surrounding the maize Y1 gene are indicative of an asymmetric selective sweep PNAS, June 29, 2004; 101(26): 9885 - 9890. [Abstract] [Full Text] [PDF]
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J. Ma, K. M. Devos, and J. L. Bennetzen Analyses of LTR-Retrotransposon Structures Reveal Recent and Rapid Genomic DNA Loss in Rice Genome Res., May 1, 2004; 14(5): 860 - 869. [Abstract] [Full Text] [PDF]
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X. Zhang and S. R. Wessler Genome-wide comparative analysis of the transposable elements in the related species Arabidopsis thaliana and Brassica oleracea PNAS, April 13, 2004; 101(15): 5589 - 5594. [Abstract] [Full Text] [PDF]
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Y. Akiyama, J. A. Conner, S. Goel, D. T. Morishige, J. E. Mullet, W. W. Hanna, and P. Ozias-Akins High-Resolution Physical Mapping in Pennisetum squamulatum Reveals Extensive Chromosomal Heteromorphism of the Genomic Region Associated with Apomixis Plant Physiology, April 1, 2004; 134(4): 1733 - 1741. [Abstract] [Full Text] [PDF]
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R. Kalendar, C. M. Vicient, O. Peleg, K. Anamthawat-Jonsson, A. Bolshoy, and A. H. Schulman Large Retrotransposon Derivatives: Abundant, Conserved but Nonautonomous Retroelements of Barley and Related Genomes Genetics, March 1, 2004; 166(3): 1437 - 1450. [Abstract] [Full Text] [PDF]
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J. C. Kuhl, F. Cheung, Q. Yuan, W. Martin, Y. Zewdie, J. McCallum, A. Catanach, P. Rutherford, K. C. Sink, M. Jenderek, et al. A Unique Set of 11,008 Onion Expressed Sequence Tags Reveals Expressed Sequence and Genomic Differences between the Monocot Orders Asparagales and Poales PLANT CELL, January 1, 2004; 16(1): 114 - 125. [Abstract] [Full Text] [PDF]
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 L. E. Palmer, P. D. Rabinowicz, A. L. O'Shaughnessy, V. S. Balija, L. U. Nascimento, S. Dike, M. de la Bastide, R. A. Martienssen, and W. R. McCombie Maize Genome Sequencing by Methylation Filtration Science, December 19, 2003; 302(5653): 2115 - 2117. [Abstract] [Full Text] [PDF]
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C. A. Whitelaw, W. B. Barbazuk, G. Pertea, A. P. Chan, F. Cheung, Y. Lee, L. Zheng, S. van Heeringen, S. Karamycheva, J. L. Bennetzen, et al. Enrichment of Gene-Coding Sequences in Maize by Genome Filtration Science, December 19, 2003; 302(5653): 2118 - 2120. [Abstract] [Full Text] [PDF]
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R. J. Mroczek and R. K. Dawe Distribution of Retroelements in Centromeres and Neocentromeres of Maize Genetics, October 1, 2003; 165(2): 809 - 819. [Abstract] [Full Text] [PDF]
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M. Komatsu, K. Shimamoto, and J. Kyozuka Two-Step Regulation and Continuous Retrotransposition of the Rice LINE-Type Retrotransposon Karma PLANT CELL, August 1, 2003; 15(8): 1934 - 1944. [Abstract] [Full Text] [PDF]
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E. K. Kentner, M. L. Arnold, and S. R. Wessler Characterization of High-Copy-Number Retrotransposons From the Large Genomes of the Louisiana Iris Species and Their Use as Molecular Markers Genetics, June 1, 2003; 164(2): 685 - 697. [Abstract] [Full Text] [PDF]
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 J. Garcia-Martinez and J. A. Martinez-Izquierdo Study on the Evolution of the Grande Retrotransposon in the Zea Genus Mol. Biol. Evol., May 1, 2003; 20(5): 831 - 841. [Abstract] [Full Text] [PDF]
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N. A. Eckardt A New Twist on Transposons: The Maize Genome Harbors Helitron Insertion PLANT CELL, February 1, 2003; 15(2): 293 - 295. [Full Text] [PDF]
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K. C. Cone, M. D. McMullen, I. V. Bi, G. L. Davis, Y.-S. Yim, J. M. Gardiner, M. L. Polacco, H. Sanchez-Villeda, Z. Fang, S. G. Schroeder, et al. Genetic, Physical, and Informatics Resources for Maize. On the Road to an Integrated Map Plant Physiology, December 1, 2002; 130(4): 1598 - 1605. [Full Text] [PDF]
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N. Jiang, I. K. Jordan, and S. R. Wessler Dasheng and RIRE2. A Nonautonomous Long Terminal Repeat Element and Its Putative Autonomous Partner in the Rice Genome Plant Physiology, December 1, 2002; 130(4): 1697 - 1705. [Abstract] [Full Text] [PDF]
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W. Ramakrishna, J. Emberton, M. Ogden, P. SanMiguel, and J. L. Bennetzen Structural Analysis of the Maize Rp1 Complex Reveals Numerous Sites and Unexpected Mechanisms of Local Rearrangement PLANT CELL, December 1, 2002; 14(12): 3213 - 3223. [Abstract] [Full Text] [PDF]
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Y.-S. Yim, G. L. Davis, N. A. Duru, T. A. Musket, E. W. Linton, J. W. Messing, M. D. McMullen, C. A. Soderlund, M. L. Polacco, J. M. Gardiner, et al. Characterization of Three Maize Bacterial Artificial Chromosome Libraries toward Anchoring of the Physical Map to the Genetic Map Using High-Density Bacterial Artificial Chromosome Filter Hybridization Plant Physiology, December 1, 2002; 130(4): 1686 - 1696. [Abstract] [Full Text] [PDF]
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W. Ramakrishna, J. Dubcovsky, Y.-J. Park, C. Busso, J. Emberton, P. SanMiguel, and J. L. Bennetzen Different Types and Rates of Genome Evolution Detected by Comparative Sequence Analysis of Orthologous Segments From Four Cereal Genomes Genetics, November 1, 2002; 162(3): 1389 - 1400. [Abstract] [Full Text] [PDF]
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Y. Yuan, P. J. SanMiguel, and J. L. Bennetzen Methylation-Spanning Linker Libraries Link Gene-Rich Regions and Identify Epigenetic Boundaries in Zea mays Genome Res., September 1, 2002; 12(9): 1345 - 1349. [Abstract] [Full Text] [PDF]
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F. Wei, R. A. Wing, and R. P. Wise Genome Dynamics and Evolution of the Mla (Powdery Mildew) Resistance Locus in Barley PLANT CELL, August 1, 2002; 14(8): 1903 - 1917. [Abstract] [Full Text] [PDF]
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J. L. Bennetzen and W. Ramakrishna Exceptional haplotype variation in maize PNAS, July 9, 2002; 99(14): 9093 - 9095. [Full Text] [PDF]
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N. Jiang, Z. Bao, S. Temnykh, Z. Cheng, J. Jiang, R. A. Wing, S. R. McCouch, and S. R. Wessler Dasheng: A Recently Amplified Nonautonomous Long Terminal Repeat Element That Is a Major Component of Pericentromeric Regions in Rice Genetics, July 1, 2002; 161(3): 1293 - 1305. [Abstract] [Full Text] [PDF]
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G. K.-S. Wong, J. Wang, L. Tao, J. Tan, J. Zhang, D. A. Passey, and J. Yu Compositional Gradients in Gramineae Genes Genome Res., June 1, 2002; 12(6): 851 - 856. [Abstract] [Full Text] [PDF]
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