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Vol. 11, Issue 10, 1651-1659, October 2001
LETTER
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  C. Knibbe, A. Coulon, O. Mazet, J.-M. Fayard, and G. Beslon A Long-Term Evolutionary Pressure on the Amount of Noncoding DNA Mol. Biol. Evol., October 1, 2007; 24(10): 2344 - 2353. [Abstract] [Full Text] [PDF]
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B. R. Morton and S. I. Wright Selective Constraints on Codon Usage of Nuclear Genes from Arabidopsis thaliana Mol. Biol. Evol., January 1, 2007; 24(1): 122 - 129. [Abstract] [Full Text] [PDF]
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 C. P. Ponting and G. Lunter Signatures of adaptive evolution within human non-coding sequence Hum. Mol. Genet., October 15, 2006; 15(suppl_2): R170 - R175. [Abstract] [Full Text] [PDF]
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 I. Rigoutsos, T. Huynh, K. Miranda, A. Tsirigos, A. McHardy, and D. Platt Short blocks from the noncoding parts of the human genome have instances within nearly all known genes and relate to biological processes PNAS, April 25, 2006; 103(17): 6605 - 6610. [Abstract] [Full Text] [PDF]
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 P. D. Keightley, G. V. Kryukov, S. Sunyaev, D. L. Halligan, and D. J. Gaffney Evolutionary constraints in conserved nongenic sequences of mammals Genome Res., October 1, 2005; 15(10): 1373 - 1378. [Abstract] [Full Text] [PDF]
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 J. T. Shin, J. R. Priest, I. Ovcharenko, A. Ronco, R. K. Moore, C. G. Burns, and C. A. MacRae Human-zebrafish non-coding conserved elements act in vivo to regulate transcription Nucleic Acids Res., September 22, 2005; 33(17): 5437 - 5445. [Abstract] [Full Text] [PDF]
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A. Siepel, G. Bejerano, J. S. Pedersen, A. S. Hinrichs, M. Hou, K. Rosenbloom, H. Clawson, J. Spieth, L. W. Hillier, S. Richards, et al. Evolutionarily conserved elements in vertebrate, insect, worm, and yeast genomes Genome Res., August 1, 2005; 15(8): 1034 - 1050. [Abstract] [Full Text] [PDF]
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L. M. Butcher, E. Meaburn, J. Knight, P. C. Sham, L. C. Schalkwyk, I. W. Craig, and R. Plomin SNPs, microarrays and pooled DNA: identification of four loci associated with mild mental impairment in a sample of 6000 children Hum. Mol. Genet., May 15, 2005; 14(10): 1315 - 1325. [Abstract] [Full Text] [PDF]
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M. W. Karaman, S. Groshen, C.-C. Lee, B. L. Pike, and J. G. Hacia Comparisons of substitution, insertion and deletion probes for resequencing and mutational analysis using oligonucleotide microarrays Nucleic Acids Res., February 18, 2005; 33(3): e33 - e33. [Abstract] [Full Text] [PDF]
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 T. Kreiner and K. T. Buck Moving toward whole-genome analysis: A technology perspective Am. J. Health Syst. Pharm., February 1, 2005; 62(3): 296 - 305. [Abstract] [Full Text] [PDF]
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 G. Bejerano, M. Pheasant, I. Makunin, S. Stephen, W. J. Kent, J. S. Mattick, and D. Haussler Ultraconserved Elements in the Human Genome Science, May 28, 2004; 304(5675): 1321 - 1325. [Abstract] [Full Text] [PDF]
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E. T. Dermitzakis, E. Kirkness, S. Schwarz, E. Birney, A. Reymond, and S. E. Antonarakis Comparison of Human Chromosome 21 Conserved Nongenic Sequences (CNGs) With the Mouse and Dog Genomes Shows That Their Selective Constraint Is Independent of Their Genic Environment Genome Res., May 1, 2004; 14(5): 852 - 859. [Abstract] [Full Text] [PDF]
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S. Nagpal, M. W. Karaman, M. M. Timmerman, V. V. Ho, B. L. Pike, and J. G. Hacia Improving the sensitivity and specificity of gene expression analysis in highly related organisms through the use of electronic masks Nucleic Acids Res., March 18, 2004; 32(5): e51 - e51. [Abstract] [Full Text] [PDF]
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K. A. Frazer, H. Tao, K. Osoegawa, P. J. de Jong, X. Chen, M. F. Doherty, and D. R. Cox Noncoding Sequences Conserved in a Limited Number of Mammals in the SIM2 Interval are Frequently Functional Genome Res., March 1, 2004; 14(3): 367 - 372. [Abstract] [Full Text] [PDF]
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E. T. Dermitzakis, A. Reymond, N. Scamuffa, C. Ucla, E. Kirkness, C. Rossier, and S. E. Antonarakis Evolutionary Discrimination of Mammalian Conserved Non-Genic Sequences (CNGs) Science, November 7, 2003; 302(5647): 1033 - 1035. [Abstract] [Full Text] [PDF]
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G. A. Wray, M. W. Hahn, E. Abouheif, J. P. Balhoff, M. Pizer, M. V. Rockman, and L. A. Romano The Evolution of Transcriptional Regulation in Eukaryotes Mol. Biol. Evol., September 1, 2003; 20(9): 1377 - 1419. [Abstract] [Full Text] [PDF]
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K. A. Frazer, X. Chen, D. A. Hinds, P.V. K. Pant, N. Patil, and D. R. Cox Genomic DNA Insertions and Deletions Occur Frequently Between Humans and Nonhuman Primates Genome Res., March 1, 2003; 13(3): 341 - 346. [Abstract] [Full Text] [PDF]
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K. A. Frazer, L. Elnitski, D. M. Church, I. Dubchak, and R. C. Hardison Cross-Species Sequence Comparisons: A Review of Methods and Available Resources Genome Res., January 1, 2003; 13(1): 1 - 12. [Abstract] [Full Text] [PDF]
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J. E. Collins, M. E. Goward, C. G. Cole, L. J. Smink, E. J. Huckle, S. Knowles, J. M. Bye, D. M. Beare, and I. Dunham Reevaluating Human Gene Annotation: A Second-Generation Analysis of Chromosome 22 Genome Res., January 1, 2003; 13(1): 27 - 36. [Abstract] [Full Text] [PDF]
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M. V. Rockman and G. A. Wray Abundant Raw Material for Cis-Regulatory Evolution in Humans Mol. Biol. Evol., November 1, 2002; 19(11): 1991 - 2004. [Abstract] [Full Text] [PDF]
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A. Toyoda, H. Noguchi, T. D. Taylor, T. Ito, M. T. Pletcher, Y. Sakaki, R. H. Reeves, and M. Hattori Comparative Genomic Sequence Analysis of the Human Chromosome 21 Down Syndrome Critical Region Genome Res., September 1, 2002; 12(9): 1323 - 1332. [Abstract] [Full Text] [PDF]
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J. W. Thomas, A. B. Prasad, T. J. Summers, S.-Q. Lee-Lin, V. V.B. Maduro, J. R. Idol, J. F. Ryan, P. J. Thomas, J. C. McDowell, and E. D. Green Parallel Construction of Orthologous Sequence-Ready Clone Contig Maps in Multiple Species Genome Res., August 1, 2002; 12(8): 1277 - 1285. [Abstract] [Full Text] [PDF]
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R. J. Mural, M. D. Adams, E. W. Myers, H. O. Smith, G. L. G. Miklos, R. Wides, A. Halpern, P. W. Li, G. G. Sutton, J. Nadeau, et al. A Comparison of Whole-Genome Shotgun-Derived Mouse Chromosome 16 and the Human Genome Science, May 31, 2002; 296(5573): 1661 - 1671. [Abstract] [Full Text] [PDF]
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G. K.-S. Wong, D. A. Passey, and J. Yu Most of the Human Genome Is Transcribed Genome Res., December 1, 2001; 11(12): 1975 - 1977. [Full Text] [PDF]
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M. H. Meisler Evolutionarily Conserved Noncoding DNA in the Human Genome: How Much and What For? Genome Res., October 1, 2001; 11(10): 1617 - 1618. [Full Text] [PDF]
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